Wall clock time and date at job start Tue Mar 9 2021 13:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34228 * 116.99805 * 2 1 4 4 O 1.20833 * 120.00354 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00073 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.47150 * 60.00295 * 5 3 2 7 7 C 1.53006 * 109.46982 * 180.02562 * 5 3 2 8 8 C 1.53004 * 109.46774 * 179.97438 * 7 5 3 9 9 C 1.52996 * 109.47162 * 299.99904 * 8 7 5 10 10 H 1.09000 * 109.47009 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.47069 * 300.00079 * 9 8 7 12 12 C 1.34777 * 120.00387 * 205.00069 * 11 9 8 13 13 O 1.21593 * 119.99795 * 0.02562 * 12 11 9 14 14 C 1.47602 * 120.00626 * 179.97438 * 12 11 9 15 15 C 1.39713 * 120.08402 * 0.25051 * 14 12 11 16 16 C 1.37720 * 119.91069 * 180.27779 * 15 14 12 17 17 C 1.50703 * 119.95809 * 179.77209 * 16 15 14 18 18 C 1.38979 * 120.08608 * 359.49153 * 16 15 14 19 19 O 1.35707 * 119.91070 * 180.25371 * 18 16 15 20 20 C 1.39015 * 120.17539 * 0.23787 * 18 16 15 21 21 C 1.50704 * 119.95282 * 180.02562 * 20 18 16 22 22 O 1.42896 * 109.47192 * 284.99445 * 21 20 18 23 23 Si 1.86301 * 109.46797 * 164.99815 * 21 20 18 24 24 C 1.37685 * 120.08895 * 0.02562 * 20 18 16 25 25 C 1.52995 * 109.47289 * 60.00042 * 9 8 7 26 26 C 1.53000 * 109.46836 * 299.99849 * 5 3 2 27 27 H 1.08997 * 109.47787 * 300.00109 * 1 2 3 28 28 H 1.09001 * 109.46994 * 60.00340 * 1 2 3 29 29 H 1.09000 * 109.46811 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47081 * 60.00077 * 7 5 3 31 31 H 1.09000 * 109.46797 * 299.99882 * 7 5 3 32 32 H 1.09001 * 109.46941 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47076 * 59.99668 * 8 7 5 34 34 H 0.97000 * 119.99810 * 25.00254 * 11 9 8 35 35 H 1.08010 * 120.04790 * 0.02562 * 15 14 12 36 36 H 1.09002 * 109.47152 * 269.72132 * 17 16 15 37 37 H 1.09001 * 109.46980 * 149.72232 * 17 16 15 38 38 H 1.09004 * 109.47113 * 29.72213 * 17 16 15 39 39 H 0.96706 * 113.99973 * 90.00439 * 19 18 16 40 40 H 1.08996 * 109.46868 * 45.00051 * 21 20 18 41 41 H 0.96703 * 113.99865 * 179.97438 * 22 21 20 42 42 H 1.48498 * 110.00150 * 59.99990 * 23 21 20 43 43 H 1.48504 * 109.99957 * 181.31891 * 23 21 20 44 44 H 1.08000 * 120.04385 * 179.97438 * 24 20 18 45 45 H 1.08999 * 109.47288 * 60.00028 * 25 9 8 46 46 H 1.09005 * 109.47321 * 180.02562 * 25 9 8 47 47 H 1.08999 * 109.47270 * 299.99749 * 26 5 3 48 48 H 1.09003 * 109.46988 * 60.00530 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9563 0.7807 -0.8891 7 6 4.0000 2.7423 0.0011 8 6 5.5279 2.8223 0.0023 9 6 6.0739 2.1287 1.2519 10 1 7.1624 2.1861 1.2530 11 7 5.5492 2.7926 2.4477 12 6 6.2294 2.7254 3.6093 13 8 7.2790 2.1140 3.6646 14 6 5.7010 3.3948 4.8140 15 6 4.4931 4.0943 4.7535 16 6 4.0063 4.7224 5.8783 17 6 2.7060 5.4816 5.8130 18 6 4.7095 4.6522 7.0750 19 8 4.2239 5.2682 8.1824 20 6 5.9089 3.9525 7.1406 21 6 6.6671 3.8791 8.4410 22 8 7.3096 5.1311 8.6890 23 14 7.9503 2.5326 8.3364 24 6 6.4050 3.3264 6.0192 25 6 5.6402 0.6615 1.2515 26 6 4.1128 0.5817 1.2502 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.6099 3.2361 0.8910 31 1 3.6105 3.2365 -0.8889 32 1 5.8369 3.8676 0.0023 33 1 5.9183 2.3283 -0.8874 34 1 4.7120 3.2807 2.4035 35 1 3.9439 4.1459 3.8249 36 1 2.9044 6.5198 5.5466 37 1 2.2139 5.4435 6.7849 38 1 2.0593 5.0305 5.0603 39 1 3.6428 4.7118 8.7191 40 1 5.9746 3.6587 9.2533 41 1 7.8171 5.1566 9.5118 42 1 8.9006 2.8212 7.2324 43 1 8.6836 2.4287 9.6236 44 1 7.3371 2.7833 6.0709 45 1 6.0306 0.1674 0.3618 46 1 6.0289 0.1674 2.1420 47 1 3.7227 1.0760 2.1399 48 1 3.8038 -0.4637 1.2503 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_13287732.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:17:11 Heat of formation + Delta-G solvation = -174.352315 kcal Electronic energy + Delta-G solvation = -31943.693199 eV Core-core repulsion = 27544.129949 eV Total energy + Delta-G solvation = -4399.563250 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.165 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.02881 -41.58913 -40.68912 -39.06135 -37.92051 -37.58159 -37.45000 -35.04675 -34.09885 -32.42976 -31.86777 -30.84360 -28.58077 -28.02443 -26.89964 -25.35047 -24.43362 -23.70300 -22.07874 -21.83164 -21.60315 -20.23187 -19.51870 -18.80507 -18.63296 -18.59236 -17.79612 -17.76217 -17.34928 -16.67401 -16.54075 -16.36557 -16.15269 -15.69919 -15.45145 -15.18460 -14.90661 -14.87500 -14.70226 -14.28425 -14.25140 -14.03220 -13.87594 -13.71158 -13.65942 -13.52592 -13.26112 -13.15320 -12.99886 -12.92661 -12.89991 -12.63461 -12.18568 -12.05125 -11.97129 -11.82877 -11.60775 -11.50581 -11.40019 -11.17068 -11.09047 -10.53409 -10.19393 -9.98738 -9.66111 -5.02587 -0.40274 0.04229 1.13121 1.18785 1.48971 1.60963 1.74615 1.87715 2.06066 2.53826 3.07665 3.29634 3.49047 3.54306 3.61993 3.62396 3.70511 3.73268 3.95393 3.99776 4.06254 4.12536 4.16975 4.28717 4.30743 4.32218 4.34429 4.42664 4.43151 4.46007 4.59713 4.64975 4.69480 4.71473 4.78499 4.82091 4.97079 5.02350 5.07971 5.09977 5.11359 5.15799 5.17128 5.26681 5.29479 5.30834 5.39085 5.49821 5.59165 6.42014 6.54567 6.68649 6.75215 7.10716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.462 3.538 4 O -0.537 6.537 5 C -0.075 4.075 6 H 0.132 0.868 7 C -0.103 4.103 8 C -0.117 4.117 9 C 0.139 3.861 10 H 0.080 0.920 11 N -0.706 5.706 12 C 0.561 3.439 13 O -0.574 6.574 14 C -0.152 4.152 15 C -0.058 4.058 16 C -0.121 4.121 17 C -0.109 4.109 18 C 0.159 3.841 19 O -0.493 6.493 20 C -0.118 4.118 21 C -0.065 4.065 22 O -0.553 6.553 23 Si 0.745 3.255 24 C -0.064 4.064 25 C -0.124 4.124 26 C -0.103 4.103 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.126 0.874 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.408 0.592 35 H 0.156 0.844 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.413 0.587 40 H 0.104 0.896 41 H 0.394 0.606 42 H -0.310 1.310 43 H -0.273 1.273 44 H 0.130 0.870 45 H 0.096 0.904 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.933 -3.522 -0.529 6.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.307 3.693 4 O -0.427 6.427 5 C -0.094 4.094 6 H 0.150 0.850 7 C -0.141 4.141 8 C -0.155 4.155 9 C 0.035 3.965 10 H 0.098 0.902 11 N -0.359 5.359 12 C 0.349 3.651 13 O -0.455 6.455 14 C -0.155 4.155 15 C -0.076 4.076 16 C -0.122 4.122 17 C -0.165 4.165 18 C 0.113 3.887 19 O -0.307 6.307 20 C -0.118 4.118 21 C -0.174 4.174 22 O -0.363 6.363 23 Si 0.651 3.349 24 C -0.083 4.083 25 C -0.162 4.162 26 C -0.140 4.140 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.247 0.753 35 H 0.173 0.827 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.273 0.727 40 H 0.121 0.879 41 H 0.245 0.755 42 H -0.239 1.239 43 H -0.200 1.200 44 H 0.147 0.853 45 H 0.115 0.885 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.575 -3.263 -1.214 5.750 hybrid contribution -0.227 0.921 0.920 1.321 sum -4.802 -2.342 -0.295 5.351 Atomic orbital electron populations 1.23498 0.75200 1.05471 1.02400 1.86514 1.24606 1.33294 1.83552 1.24343 0.92954 0.80988 0.71015 1.90671 1.68080 1.37270 1.46649 1.21235 0.85124 0.99859 1.03197 0.84997 1.21442 0.95845 0.93174 1.03654 1.21817 0.94264 1.02230 0.97177 1.21126 0.99081 0.92336 0.83918 0.90224 1.45998 1.26262 1.54613 1.09047 1.18290 0.83559 0.79452 0.83815 1.90784 1.24449 1.44630 1.85595 1.19832 0.97832 1.03990 0.93824 1.21311 0.93485 0.93901 0.98930 1.20427 0.98916 1.00094 0.92722 1.20742 0.92072 0.99421 1.04270 1.18409 0.91703 0.90909 0.87698 1.84762 1.68266 1.41766 1.35926 1.19670 0.96771 1.00221 0.95170 1.24655 1.02354 0.93535 0.96905 1.86591 1.69504 1.32811 1.47401 0.94326 0.79364 0.84485 0.76722 1.21075 0.98832 0.97107 0.91278 1.21874 0.94926 0.95736 1.03668 1.21427 0.95744 1.01433 0.95423 0.92019 0.92121 0.85584 0.91531 0.90412 0.89960 0.87891 0.75302 0.82663 0.90908 0.90198 0.89681 0.72650 0.87851 0.75516 1.23855 1.19975 0.85300 0.88524 0.92266 0.91975 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 10.56 113.37 1.20 1.12 16 2 O -0.36 -0.28 10.47 -51.40 -0.54 -0.82 16 3 C 0.46 0.63 7.26 71.24 0.52 1.15 16 4 O -0.54 -3.82 15.73 21.94 0.35 -3.48 16 5 C -0.08 0.35 2.63 -11.54 -0.03 0.32 16 6 H 0.13 -1.08 8.14 -2.39 -0.02 -1.10 16 7 C -0.10 0.55 4.32 30.60 0.13 0.69 16 8 C -0.12 0.81 5.61 30.59 0.17 0.98 16 9 C 0.14 -0.34 2.78 44.99 0.13 -0.22 16 10 H 0.08 0.12 7.58 -2.39 -0.02 0.10 16 11 N -0.71 0.60 4.18 -445.64 -1.86 -1.26 16 12 C 0.56 3.49 7.73 86.71 0.67 4.16 16 13 O -0.57 -8.06 16.00 -4.01 -0.06 -8.13 16 14 C -0.15 -0.71 5.87 -20.09 -0.12 -0.82 16 15 C -0.06 0.03 9.18 22.50 0.21 0.23 16 16 C -0.12 0.00 5.89 -19.81 -0.12 -0.12 16 17 C -0.11 0.45 9.79 71.24 0.70 1.15 16 18 C 0.16 0.37 6.66 22.63 0.15 0.52 16 19 O -0.49 0.12 11.84 -90.28 -1.07 -0.95 16 20 C -0.12 -0.53 5.30 -19.81 -0.11 -0.64 16 21 C -0.06 -0.11 2.36 71.24 0.17 0.05 16 22 O -0.55 -3.00 12.86 -148.98 -1.92 -4.91 16 23 Si 0.74 1.70 30.19 68.60 2.07 3.77 16 24 C -0.06 -0.44 8.20 22.50 0.18 -0.26 16 25 C -0.12 0.44 5.60 30.58 0.17 0.61 16 26 C -0.10 0.46 4.97 30.58 0.15 0.61 16 27 H 0.06 -0.14 8.13 -2.39 -0.02 -0.16 16 28 H 0.06 -0.12 8.13 -2.39 -0.02 -0.14 16 29 H 0.13 -0.98 8.14 -2.39 -0.02 -1.00 16 30 H 0.07 -0.31 6.46 -2.39 -0.02 -0.33 16 31 H 0.08 -0.32 8.10 -2.39 -0.02 -0.34 16 32 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 33 H 0.10 -0.99 8.14 -2.39 -0.02 -1.01 16 34 H 0.41 -2.05 4.89 -92.71 -0.45 -2.50 16 35 H 0.16 -1.00 6.40 -2.91 -0.02 -1.02 16 36 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.08 -0.45 7.52 -2.39 -0.02 -0.47 16 38 H 0.08 -0.60 8.08 -2.38 -0.02 -0.62 16 39 H 0.41 -4.28 9.06 -74.05 -0.67 -4.95 16 40 H 0.10 -0.44 7.82 -2.39 -0.02 -0.46 16 41 H 0.39 -1.18 8.74 -74.06 -0.65 -1.83 16 42 H -0.31 -3.78 6.75 99.48 0.67 -3.11 16 43 H -0.27 -1.26 7.11 99.48 0.71 -0.55 16 44 H 0.13 1.22 4.47 -2.91 -0.01 1.20 16 45 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 46 H 0.06 0.07 8.14 -2.38 -0.02 0.05 16 47 H 0.06 -0.19 7.60 -2.39 -0.02 -0.21 16 48 H 0.08 -0.37 8.11 -2.39 -0.02 -0.39 16 Total: 0.00 -26.90 387.93 0.39 -26.50 By element: Atomic # 1 Polarization: -19.54 SS G_CDS: -0.75 Total: -20.29 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 4.17 Total: 9.56 kcal Atomic # 7 Polarization: 0.60 SS G_CDS: -1.86 Total: -1.26 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -3.24 Total: -18.28 kcal Atomic # 14 Polarization: 1.70 SS G_CDS: 2.07 Total: 3.77 kcal Total: -26.90 0.39 -26.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_13287732.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.849 kcal (2) G-P(sol) polarization free energy of solvation -26.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds