Wall clock time and date at job start Tue Mar 9 2021 13:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99565 * 2 1 4 4 O 1.20828 * 120.00451 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99998 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.47111 * 60.00195 * 5 3 2 7 7 C 1.52998 * 109.47330 * 179.97438 * 5 3 2 8 8 C 1.53001 * 109.47241 * 179.97438 * 7 5 3 9 9 C 1.53003 * 109.46939 * 300.00175 * 8 7 5 10 10 H 1.09007 * 109.46782 * 179.97438 * 9 8 7 11 11 N 1.46499 * 109.47311 * 299.99633 * 9 8 7 12 12 C 1.34775 * 120.00209 * 204.99739 * 11 9 8 13 13 O 1.21552 * 119.99627 * 0.02562 * 12 11 9 14 14 C 1.47837 * 120.00307 * 180.02562 * 12 11 9 15 15 C 1.39526 * 120.55593 * 0.02562 * 14 12 11 16 16 N 1.31695 * 120.56541 * 180.25698 * 15 14 12 17 17 C 1.31930 * 121.87674 * 359.42716 * 16 15 14 18 18 C 1.38355 * 121.07934 * 0.57491 * 17 16 15 19 19 C 1.50702 * 120.34744 * 179.74430 * 18 17 16 20 20 O 1.42899 * 109.47080 * 244.97911 * 19 18 17 21 21 Si 1.86297 * 109.47156 * 4.97673 * 19 18 17 22 22 C 1.38354 * 119.30303 * 359.71993 * 18 17 16 23 23 C 1.53003 * 109.46929 * 60.00224 * 9 8 7 24 24 C 1.52996 * 109.47158 * 299.99322 * 23 9 8 25 25 H 1.08990 * 109.47576 * 299.99489 * 1 2 3 26 26 H 1.09007 * 109.47308 * 60.00120 * 1 2 3 27 27 H 1.09003 * 109.46545 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46786 * 60.00092 * 7 5 3 29 29 H 1.09001 * 109.47062 * 300.00303 * 7 5 3 30 30 H 1.08999 * 109.46866 * 180.02562 * 8 7 5 31 31 H 1.08992 * 109.46940 * 60.00483 * 8 7 5 32 32 H 0.96996 * 119.99717 * 25.00745 * 11 9 8 33 33 H 1.08002 * 119.71532 * 359.97295 * 15 14 12 34 34 H 1.08000 * 119.46084 * 180.29571 * 17 16 15 35 35 H 1.09000 * 109.46874 * 124.97408 * 19 18 17 36 36 H 0.96698 * 114.00124 * 60.00028 * 20 19 18 37 37 H 1.48504 * 110.00137 * 58.68089 * 21 19 18 38 38 H 1.48502 * 110.00042 * 179.97438 * 21 19 18 39 39 H 1.08004 * 120.85655 * 179.97438 * 22 18 17 40 40 H 1.09001 * 109.47268 * 59.99782 * 23 9 8 41 41 H 1.09001 * 109.46695 * 179.97438 * 23 9 8 42 42 H 1.09001 * 109.47105 * 300.00831 * 24 23 9 43 43 H 1.08997 * 109.47600 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9564 0.7808 -0.8892 7 6 4.0000 2.7422 -0.0002 8 6 5.5279 2.8224 0.0011 9 6 6.0739 2.1298 1.2513 10 1 7.1625 2.1865 1.2519 11 7 5.5491 2.7947 2.4465 12 6 6.2293 2.7284 3.6081 13 8 7.2785 2.1171 3.6639 14 6 5.6995 3.3990 4.8144 15 6 4.4961 4.1033 4.7637 16 7 4.0265 4.7049 5.8369 17 6 4.6586 4.6594 6.9940 18 6 5.8575 3.9818 7.1266 19 6 6.5686 3.9453 8.4549 20 8 7.8155 4.6348 8.3468 21 14 5.5121 4.7716 9.7478 22 6 6.3965 3.3376 6.0272 23 6 5.6402 0.6625 1.2519 24 6 4.1123 0.5823 1.2508 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 3.6098 3.2368 0.8893 29 1 3.6106 3.2357 -0.8906 30 1 5.8368 3.8677 0.0010 31 1 5.9183 2.3277 -0.8882 32 1 4.7120 3.2827 2.4019 33 1 3.9474 4.1593 3.8351 34 1 4.2356 5.1632 7.8505 35 1 6.7498 2.9094 8.7416 36 1 7.7303 5.5643 8.0942 37 1 4.2000 4.0833 9.8474 38 1 6.2019 4.7417 11.0625 39 1 7.3311 2.8015 6.1024 40 1 6.0307 0.1678 0.3626 41 1 6.0295 0.1690 2.1424 42 1 3.7218 1.0771 2.1401 43 1 3.8032 -0.4629 1.2508 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_13287814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:17:43 Heat of formation + Delta-G solvation = -117.594923 kcal Electronic energy + Delta-G solvation = -27372.909125 eV Core-core repulsion = 23384.600960 eV Total energy + Delta-G solvation = -3988.308165 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.14164 -41.71362 -40.68143 -39.00106 -37.93995 -37.53933 -35.11103 -33.79801 -33.28276 -31.90298 -31.19904 -28.62935 -27.30250 -26.04562 -24.67888 -23.91257 -23.72341 -22.11514 -21.71055 -20.27636 -19.37870 -18.65668 -18.13216 -18.03323 -17.80886 -17.69007 -17.40023 -16.67723 -16.46628 -16.27971 -16.01649 -15.56529 -15.24860 -14.97359 -14.85289 -14.57178 -14.40312 -14.30151 -14.23919 -13.90135 -13.69488 -13.52754 -13.28361 -13.17713 -12.94239 -12.72915 -12.21449 -12.19932 -12.08038 -11.86236 -11.64615 -11.45675 -11.41178 -11.18255 -11.09839 -10.61809 -10.59056 -10.37149 -10.11951 -5.03623 -0.59961 -0.06319 1.10257 1.21537 1.60969 1.65115 1.71900 1.92385 2.00341 2.60518 3.07140 3.36472 3.43895 3.46602 3.58128 3.62402 3.67863 3.71010 3.73409 3.95027 4.03994 4.08437 4.13172 4.22456 4.25627 4.27464 4.33618 4.39651 4.42145 4.45398 4.61603 4.67693 4.78493 4.79884 4.87477 4.97654 5.04777 5.09527 5.12762 5.23401 5.27822 5.29536 5.36137 5.46265 6.33477 6.61159 6.65645 6.69817 7.02209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.461 3.539 4 O -0.537 6.537 5 C -0.075 4.075 6 H 0.133 0.867 7 C -0.105 4.105 8 C -0.116 4.116 9 C 0.141 3.859 10 H 0.084 0.916 11 N -0.705 5.705 12 C 0.566 3.434 13 O -0.569 6.569 14 C -0.196 4.196 15 C 0.143 3.857 16 N -0.494 5.494 17 C 0.130 3.870 18 C -0.175 4.175 19 C -0.072 4.072 20 O -0.553 6.553 21 Si 0.782 3.218 22 C -0.001 4.001 23 C -0.124 4.124 24 C -0.104 4.104 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.126 0.874 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.409 0.591 33 H 0.183 0.817 34 H 0.186 0.814 35 H 0.112 0.888 36 H 0.397 0.603 37 H -0.278 1.278 38 H -0.294 1.294 39 H 0.138 0.862 40 H 0.098 0.902 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.155 1.574 -2.575 3.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.305 3.695 4 O -0.426 6.426 5 C -0.094 4.094 6 H 0.151 0.849 7 C -0.142 4.142 8 C -0.154 4.154 9 C 0.037 3.963 10 H 0.102 0.898 11 N -0.358 5.358 12 C 0.352 3.648 13 O -0.449 6.449 14 C -0.202 4.202 15 C -0.015 4.015 16 N -0.201 5.201 17 C -0.026 4.026 18 C -0.178 4.178 19 C -0.182 4.182 20 O -0.361 6.361 21 Si 0.687 3.313 22 C -0.028 4.028 23 C -0.163 4.163 24 C -0.141 4.141 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.144 0.856 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.247 0.753 33 H 0.200 0.800 34 H 0.202 0.798 35 H 0.129 0.871 36 H 0.247 0.753 37 H -0.205 1.205 38 H -0.221 1.221 39 H 0.156 0.844 40 H 0.116 0.884 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.639 1.217 -1.729 3.382 hybrid contribution 0.320 -0.947 -0.121 1.007 sum -2.319 0.270 -1.849 2.979 Atomic orbital electron populations 1.23497 0.75219 1.05460 1.02401 1.86513 1.24601 1.33375 1.83575 1.24391 0.93049 0.80972 0.71045 1.90674 1.68096 1.37255 1.46590 1.21245 0.84993 1.00067 1.03083 0.84890 1.21459 0.96051 0.92958 1.03757 1.21823 0.94029 1.02460 0.97079 1.21142 0.99258 0.92031 0.83882 0.89806 1.46011 1.26212 1.54463 1.09102 1.18140 0.83588 0.79498 0.83526 1.90794 1.24379 1.44366 1.85395 1.21043 0.99079 1.04756 0.95272 1.23341 0.91013 0.89313 0.97844 1.67789 1.33619 1.19120 0.99598 1.23231 0.90281 0.93201 0.95874 1.21464 0.97724 1.00898 0.97683 1.25227 0.91828 1.02202 0.98961 1.86511 1.27938 1.29383 1.92289 0.93778 0.74715 0.88065 0.74792 1.21653 0.98079 0.92510 0.90553 1.21890 0.94733 0.96036 1.03615 1.21436 0.95916 1.01332 0.95447 0.92167 0.91982 0.85599 0.91527 0.90282 0.89538 0.87801 0.75285 0.80049 0.79785 0.87105 0.75278 1.20503 1.22133 0.84410 0.88373 0.92568 0.92224 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.57 10.47 -51.39 -0.54 -1.11 16 3 C 0.46 0.89 7.25 71.24 0.52 1.41 16 4 O -0.54 -4.18 15.73 21.96 0.35 -3.83 16 5 C -0.08 0.35 2.63 -11.54 -0.03 0.32 16 6 H 0.13 -1.11 8.14 -2.39 -0.02 -1.13 16 7 C -0.10 0.62 4.32 30.59 0.13 0.75 16 8 C -0.12 0.95 5.61 30.60 0.17 1.13 16 9 C 0.14 -0.54 2.78 44.99 0.13 -0.41 16 10 H 0.08 -0.03 7.58 -2.38 -0.02 -0.05 16 11 N -0.71 1.79 4.19 -445.40 -1.86 -0.08 16 12 C 0.57 2.23 7.75 86.78 0.67 2.91 16 13 O -0.57 -6.72 16.08 -3.88 -0.06 -6.78 16 14 C -0.20 -0.42 5.89 -19.99 -0.12 -0.54 16 15 C 0.14 -0.10 10.71 85.02 0.91 0.81 16 16 N -0.49 -0.61 10.35 -194.75 -2.01 -2.62 16 17 C 0.13 -0.19 9.84 84.71 0.83 0.64 16 18 C -0.18 0.07 5.35 -19.81 -0.11 -0.04 16 19 C -0.07 0.12 2.82 71.24 0.20 0.32 16 20 O -0.55 0.27 12.84 -148.98 -1.91 -1.64 16 21 Si 0.78 -3.46 29.83 68.60 2.05 -1.41 16 22 C 0.00 0.00 9.38 22.73 0.21 0.21 16 23 C -0.12 0.49 5.60 30.59 0.17 0.66 16 24 C -0.10 0.43 4.98 30.59 0.15 0.59 16 25 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 26 H 0.06 -0.08 8.13 -2.38 -0.02 -0.10 16 27 H 0.13 -0.87 8.14 -2.39 -0.02 -0.88 16 28 H 0.07 -0.35 6.46 -2.39 -0.02 -0.36 16 29 H 0.08 -0.37 8.10 -2.39 -0.02 -0.38 16 30 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 31 H 0.10 -1.12 8.14 -2.39 -0.02 -1.14 16 32 H 0.41 -2.65 4.93 -92.71 -0.46 -3.11 16 33 H 0.18 -1.20 6.42 -2.91 -0.02 -1.22 16 34 H 0.19 -1.29 4.91 -2.91 -0.01 -1.31 16 35 H 0.11 -0.04 7.96 -2.39 -0.02 -0.06 16 36 H 0.40 -3.54 8.70 -74.06 -0.64 -4.18 16 37 H -0.28 0.02 7.11 99.48 0.71 0.73 16 38 H -0.29 -0.96 7.11 99.48 0.71 -0.25 16 39 H 0.14 0.79 7.74 -2.91 -0.02 0.77 16 40 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 41 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.06 -0.15 7.60 -2.39 -0.02 -0.17 16 43 H 0.08 -0.30 8.11 -2.39 -0.02 -0.32 16 Total: 0.00 -23.31 352.80 1.03 -22.27 By element: Atomic # 1 Polarization: -14.68 SS G_CDS: -0.01 Total: -14.69 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 5.04 Total: 9.89 kcal Atomic # 7 Polarization: 1.18 SS G_CDS: -3.88 Total: -2.70 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -2.17 Total: -13.36 kcal Atomic # 14 Polarization: -3.46 SS G_CDS: 2.05 Total: -1.41 kcal Total: -23.31 1.03 -22.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_13287814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.323 kcal (2) G-P(sol) polarization free energy of solvation -23.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds