Wall clock time and date at job start Tue Mar 9 2021 13:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 117.00436 * 2 1 4 4 O 1.20826 * 120.00050 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00108 * 179.97438 * 3 2 1 6 6 H 1.08992 * 109.47284 * 300.00185 * 5 3 2 7 7 C 1.53002 * 109.46958 * 60.00103 * 5 3 2 8 8 C 1.52997 * 109.46978 * 180.02562 * 7 5 3 9 9 C 1.53006 * 109.47164 * 299.99874 * 8 7 5 10 10 H 1.08996 * 109.46884 * 180.02562 * 9 8 7 11 11 N 1.46497 * 109.46631 * 300.00053 * 9 8 7 12 12 C 1.34780 * 120.00425 * 274.99731 * 11 9 8 13 13 O 1.21618 * 119.99378 * 359.97438 * 12 11 9 14 14 C 1.47374 * 120.00550 * 180.02562 * 12 11 9 15 15 C 1.36421 * 127.19492 * 179.70732 * 14 12 11 16 16 C 1.50701 * 125.79969 * 0.02562 * 15 14 12 17 17 O 1.33647 * 108.39362 * 179.89547 * 15 14 12 18 18 C 1.34208 * 110.91210 * 0.38852 * 17 15 14 19 19 C 1.50707 * 125.43472 * 179.76151 * 18 17 15 20 20 O 1.42895 * 109.46953 * 244.99789 * 19 18 17 21 21 Si 1.86294 * 109.47506 * 5.00120 * 19 18 17 22 22 C 1.34176 * 109.12740 * 359.76223 * 18 17 15 23 23 C 1.52997 * 109.47127 * 59.99836 * 9 8 7 24 24 C 1.52996 * 109.46990 * 179.97438 * 5 3 2 25 25 H 1.09001 * 109.46755 * 59.99811 * 1 2 3 26 26 H 1.08993 * 109.47498 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46924 * 300.00276 * 1 2 3 28 28 H 1.09002 * 109.47097 * 299.99808 * 7 5 3 29 29 H 1.09001 * 109.47142 * 59.99773 * 7 5 3 30 30 H 1.09001 * 109.47375 * 59.99908 * 8 7 5 31 31 H 1.09000 * 109.47140 * 179.97438 * 8 7 5 32 32 H 0.97006 * 120.00119 * 95.00205 * 11 9 8 33 33 H 1.08998 * 109.46746 * 89.99628 * 16 15 14 34 34 H 1.08992 * 109.47162 * 210.00167 * 16 15 14 35 35 H 1.09006 * 109.46827 * 330.00200 * 16 15 14 36 36 H 1.08999 * 109.46751 * 125.00198 * 19 18 17 37 37 H 0.96701 * 114.00230 * 180.02562 * 20 19 18 38 38 H 1.48502 * 109.99821 * 300.00209 * 21 19 18 39 39 H 1.48500 * 110.00020 * 61.31361 * 21 19 18 40 40 H 1.07996 * 127.02293 * 180.02562 * 22 18 17 41 41 H 1.09002 * 109.47153 * 180.02562 * 23 9 8 42 42 H 1.09001 * 109.46832 * 60.00321 * 23 9 8 43 43 H 1.09004 * 109.47368 * 60.00232 * 24 5 3 44 44 H 1.09001 * 109.47372 * 300.00388 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9558 0.7808 0.8907 7 6 4.1139 0.5809 -1.2483 8 6 5.6418 0.6603 -1.2474 9 6 6.0762 2.1274 -1.2472 10 1 7.1647 2.1839 -1.2470 11 7 5.5534 2.7915 -2.4438 12 6 6.2352 2.7240 -3.6044 13 8 7.2849 2.1121 -3.6582 14 6 5.7096 3.3926 -4.8079 15 6 6.2769 3.4238 -6.0482 16 6 7.5762 2.7687 -6.4400 17 8 5.4830 4.1318 -6.8574 18 6 4.4056 4.5833 -6.1966 19 6 3.3026 5.4199 -6.7920 20 8 3.2983 6.7098 -6.1771 21 14 3.5842 5.6063 -8.6240 22 6 4.4673 4.1708 -4.9213 23 6 5.5287 2.8212 0.0016 24 6 4.0003 2.7419 -0.0002 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.8048 -0.4644 -1.2482 29 1 3.7245 1.0748 -2.1386 30 1 6.0308 0.1661 -0.3572 31 1 6.0319 0.1656 -2.1369 32 1 4.7164 3.2800 -2.4007 33 1 7.3811 1.7545 -6.7885 34 1 8.0465 3.3430 -7.2381 35 1 8.2408 2.7346 -5.5766 36 1 2.3432 4.9321 -6.6196 37 1 2.6120 7.3030 -6.5121 38 1 4.8892 6.2701 -8.8723 39 1 3.5593 4.2741 -9.2798 40 1 3.7507 4.3695 -4.1382 41 1 5.8378 3.8665 0.0015 42 1 5.9178 2.3270 0.8918 43 1 3.6102 3.2366 0.8893 44 1 3.6109 3.2355 -0.8906 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_13308374.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:17:52 Heat of formation + Delta-G solvation = -142.441507 kcal Electronic energy + Delta-G solvation = -28427.399388 eV Core-core repulsion = 24312.983654 eV Total energy + Delta-G solvation = -4114.415734 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.93331 -41.93069 -40.93195 -39.01774 -37.92627 -37.54796 -35.04723 -34.27144 -33.32408 -31.92170 -31.44647 -29.49744 -28.61041 -26.04611 -25.00875 -24.22339 -23.74990 -22.60781 -21.73463 -20.90614 -20.19659 -18.80505 -18.65864 -18.54330 -17.84567 -17.56158 -17.44064 -17.18846 -16.75036 -16.37522 -15.93495 -15.82308 -15.48343 -15.08765 -14.89917 -14.76872 -14.40934 -14.28742 -14.25658 -14.15996 -13.99790 -13.89314 -13.69946 -13.29549 -13.18910 -13.16738 -12.94917 -12.63614 -12.23801 -12.22964 -12.09013 -11.87036 -11.65107 -11.43671 -11.21065 -11.16415 -11.06022 -10.49776 -10.15369 -9.70104 -5.11097 0.08489 0.68776 1.08726 1.13506 1.38792 1.61504 1.70625 1.98440 2.11288 2.16804 3.12451 3.45029 3.54143 3.59625 3.63141 3.65198 3.66604 3.95067 4.01409 4.02956 4.13050 4.21516 4.25139 4.27051 4.30261 4.34663 4.38382 4.40524 4.44553 4.53217 4.59079 4.66987 4.67176 4.77641 4.94469 4.99021 5.03836 5.07352 5.08331 5.11725 5.23107 5.26317 5.35136 5.49118 5.75245 6.40859 6.64349 6.80640 7.09273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.462 3.538 4 O -0.537 6.537 5 C -0.074 4.074 6 H 0.135 0.865 7 C -0.103 4.103 8 C -0.123 4.123 9 C 0.141 3.859 10 H 0.083 0.917 11 N -0.706 5.706 12 C 0.592 3.408 13 O -0.568 6.568 14 C -0.264 4.264 15 C 0.075 3.925 16 C -0.083 4.083 17 O -0.192 6.192 18 C -0.035 4.035 19 C -0.039 4.039 20 O -0.560 6.560 21 Si 0.808 3.192 22 C -0.144 4.144 23 C -0.117 4.117 24 C -0.103 4.103 25 H 0.060 0.940 26 H 0.127 0.873 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.407 0.593 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.127 0.873 37 H 0.414 0.586 38 H -0.307 1.307 39 H -0.294 1.294 40 H 0.179 0.821 41 H 0.081 0.919 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.901 0.123 0.712 4.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.306 3.694 4 O -0.427 6.427 5 C -0.093 4.093 6 H 0.153 0.847 7 C -0.140 4.140 8 C -0.161 4.161 9 C 0.037 3.963 10 H 0.101 0.899 11 N -0.358 5.358 12 C 0.380 3.620 13 O -0.449 6.449 14 C -0.269 4.269 15 C 0.022 3.978 16 C -0.139 4.139 17 O -0.091 6.091 18 C -0.083 4.083 19 C -0.148 4.148 20 O -0.372 6.372 21 Si 0.714 3.286 22 C -0.163 4.163 23 C -0.154 4.154 24 C -0.141 4.141 25 H 0.079 0.921 26 H 0.145 0.855 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.244 0.756 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.144 0.856 37 H 0.267 0.733 38 H -0.235 1.235 39 H -0.221 1.221 40 H 0.196 0.804 41 H 0.100 0.900 42 H 0.124 0.876 43 H 0.097 0.903 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.391 -0.405 0.067 3.415 hybrid contribution -0.560 0.029 0.451 0.719 sum -3.951 -0.376 0.518 4.002 Atomic orbital electron populations 1.23507 0.75153 1.05510 1.02410 1.86512 1.24663 1.33265 1.83557 1.24356 0.92989 0.81000 0.71017 1.90668 1.68090 1.37295 1.46642 1.21228 0.85112 0.99837 1.03133 0.84748 1.21424 0.95988 1.01292 0.95336 1.21884 0.94693 0.95895 1.03659 1.21132 0.99201 0.92146 0.83784 0.89857 1.45896 1.26204 1.54649 1.09017 1.17201 0.83214 0.78888 0.82659 1.90747 1.24055 1.44651 1.85467 1.21341 0.99864 1.10460 0.95209 1.23357 0.93512 0.92877 0.88030 1.20720 0.88147 1.00397 1.04598 1.83692 1.29347 1.55245 1.40787 1.21817 0.90318 1.03551 0.92574 1.23991 0.95313 0.85736 1.09727 1.86411 1.61168 1.23037 1.66547 0.94330 0.82220 0.80159 0.71929 1.22806 0.97587 0.99073 0.96800 1.21827 0.94090 1.02227 0.97268 1.21443 0.96035 0.93148 1.03482 0.92146 0.85506 0.91982 0.89979 0.92563 0.88250 0.92462 0.75633 0.88099 0.88988 0.87767 0.85577 0.73273 1.23517 1.22131 0.80364 0.90029 0.87610 0.90342 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.79 10.47 -51.40 -0.54 -1.33 16 3 C 0.46 1.39 7.26 71.24 0.52 1.91 16 4 O -0.54 -4.77 15.73 21.96 0.35 -4.42 16 5 C -0.07 0.23 2.63 -11.54 -0.03 0.20 16 6 H 0.13 -0.96 8.14 -2.39 -0.02 -0.98 16 7 C -0.10 0.26 4.98 30.59 0.15 0.41 16 8 C -0.12 0.28 5.60 30.60 0.17 0.45 16 9 C 0.14 -0.18 2.78 44.99 0.13 -0.06 16 10 H 0.08 0.15 7.57 -2.39 -0.02 0.13 16 11 N -0.71 -1.09 4.23 -445.84 -1.89 -2.98 16 12 C 0.59 4.72 7.78 86.65 0.67 5.40 16 13 O -0.57 -7.40 14.51 -4.09 -0.06 -7.46 16 14 C -0.26 -2.17 6.31 -18.99 -0.12 -2.29 16 15 C 0.08 0.68 7.37 25.26 0.19 0.86 16 16 C -0.08 -0.38 9.89 71.24 0.70 0.33 16 17 O -0.19 -1.94 8.90 4.58 0.04 -1.90 16 18 C -0.04 -0.23 6.22 24.76 0.15 -0.07 16 19 C -0.04 0.05 2.96 71.24 0.21 0.27 16 20 O -0.56 1.12 12.86 -148.98 -1.92 -0.80 16 21 Si 0.81 -1.16 32.09 68.60 2.20 1.04 16 22 C -0.14 -0.73 10.48 23.65 0.25 -0.48 16 23 C -0.12 0.66 5.61 30.61 0.17 0.83 16 24 C -0.10 0.36 4.32 30.61 0.13 0.50 16 25 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 26 H 0.13 -0.86 8.14 -2.39 -0.02 -0.88 16 27 H 0.06 -0.06 8.13 -2.38 -0.02 -0.08 16 28 H 0.08 -0.21 8.11 -2.39 -0.02 -0.23 16 29 H 0.06 0.00 7.61 -2.39 -0.02 -0.02 16 30 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.41 -0.48 6.04 -92.70 -0.56 -1.04 16 33 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.10 0.68 6.49 -2.38 -0.02 0.66 16 36 H 0.13 -0.96 7.96 -2.39 -0.02 -0.98 16 37 H 0.41 -5.59 8.74 -74.06 -0.65 -6.24 16 38 H -0.31 -2.51 7.11 99.48 0.71 -1.80 16 39 H -0.29 -1.53 7.11 99.48 0.71 -0.82 16 40 H 0.18 -0.03 7.74 -2.91 -0.02 -0.06 16 41 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 42 H 0.11 -0.95 8.14 -2.39 -0.02 -0.97 16 43 H 0.08 -0.20 8.10 -2.39 -0.02 -0.22 16 44 H 0.06 -0.11 6.46 -2.39 -0.02 -0.13 16 Total: 0.00 -25.34 363.97 2.55 -22.79 By element: Atomic # 1 Polarization: -14.21 SS G_CDS: -0.13 Total: -14.35 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 4.49 Total: 9.40 kcal Atomic # 7 Polarization: -1.09 SS G_CDS: -1.89 Total: -2.98 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -2.13 Total: -15.91 kcal Atomic # 14 Polarization: -1.16 SS G_CDS: 2.20 Total: 1.04 kcal Total: -25.34 2.55 -22.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_13308374.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.655 kcal (2) G-P(sol) polarization free energy of solvation -25.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds