Wall clock time and date at job start Tue Mar 9 2021 13:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00175 * 2 1 4 4 O 1.20831 * 119.99687 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00181 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.47328 * 59.99716 * 5 3 2 7 7 C 1.53002 * 109.46999 * 179.97438 * 5 3 2 8 8 C 1.52996 * 109.46891 * 179.97438 * 7 5 3 9 9 C 1.53000 * 109.47328 * 299.99597 * 8 7 5 10 10 H 1.09002 * 109.47398 * 180.02562 * 9 8 7 11 11 N 1.46500 * 109.47023 * 300.00366 * 9 8 7 12 12 C 1.34777 * 120.00075 * 204.99547 * 11 9 8 13 13 O 1.21287 * 119.99865 * 0.02562 * 12 11 9 14 14 C 1.50699 * 120.00179 * 179.97438 * 12 11 9 15 15 O 1.42901 * 109.47143 * 180.02562 * 14 12 11 16 16 C 1.35900 * 116.99910 * 180.02562 * 15 14 12 17 17 C 1.38711 * 120.05451 * 180.02562 * 16 15 14 18 18 C 1.50701 * 120.02705 * 0.02562 * 17 16 15 19 19 O 1.42900 * 109.47241 * 285.00116 * 18 17 16 20 20 Si 1.86304 * 109.46722 * 165.00223 * 18 17 16 21 21 C 1.38165 * 119.94497 * 179.97438 * 17 16 15 22 22 C 1.38244 * 120.05433 * 359.97438 * 21 17 16 23 23 C 1.38289 * 120.11186 * 0.02562 * 22 21 17 24 24 C 1.38126 * 120.05465 * 359.68287 * 23 22 21 25 25 C 1.52997 * 109.47060 * 60.00126 * 9 8 7 26 26 C 1.52997 * 109.46910 * 299.99410 * 5 3 2 27 27 H 1.09003 * 109.47035 * 300.00187 * 1 2 3 28 28 H 1.08995 * 109.47220 * 60.00495 * 1 2 3 29 29 H 1.09007 * 109.47310 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47056 * 59.99641 * 7 5 3 31 31 H 1.09004 * 109.47006 * 299.99757 * 7 5 3 32 32 H 1.09004 * 109.47368 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47372 * 59.99964 * 8 7 5 34 34 H 0.96997 * 120.00274 * 24.99518 * 11 9 8 35 35 H 1.08999 * 109.47169 * 300.00043 * 14 12 11 36 36 H 1.08999 * 109.47104 * 60.00393 * 14 12 11 37 37 H 1.08993 * 109.47166 * 45.00431 * 18 17 16 38 38 H 0.96697 * 113.99727 * 300.00405 * 19 18 17 39 39 H 1.48492 * 110.00203 * 58.68452 * 20 18 17 40 40 H 1.48502 * 109.99675 * 179.97438 * 20 18 17 41 41 H 1.08003 * 119.97412 * 179.97438 * 21 17 16 42 42 H 1.08005 * 119.94728 * 179.97438 * 22 21 17 43 43 H 1.08003 * 119.97231 * 179.97438 * 23 22 21 44 44 H 1.07997 * 120.02785 * 180.31933 * 24 23 22 45 45 H 1.08998 * 109.47533 * 59.99948 * 25 9 8 46 46 H 1.08996 * 109.47853 * 180.02562 * 25 9 8 47 47 H 1.09001 * 109.47375 * 300.00278 * 26 5 3 48 48 H 1.09000 * 109.47140 * 60.00295 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.0001 2.7421 -0.0011 8 6 5.5279 2.8221 -0.0011 9 6 6.0750 2.1291 1.2485 10 1 7.1635 2.1865 1.2488 11 7 5.5510 2.7937 2.4444 12 6 6.2322 2.7270 3.6054 13 8 7.2791 2.1171 3.6601 14 6 5.6935 3.4111 4.8354 15 8 6.5879 3.1977 5.9294 16 6 6.2467 3.7521 7.1223 17 6 7.0694 3.5851 8.2266 18 6 8.3432 2.7890 8.1045 19 8 8.0305 1.3958 8.0470 20 14 9.4273 3.1217 9.5826 21 6 6.7207 4.1502 9.4382 22 6 5.5531 4.8819 9.5504 23 6 4.7312 5.0498 8.4510 24 6 5.0785 4.4920 7.2360 25 6 5.6412 0.6619 1.2491 26 6 4.1138 0.5812 1.2484 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.6106 3.2364 0.8888 31 1 3.6100 3.2360 -0.8911 32 1 5.8371 3.8674 -0.0019 33 1 5.9178 2.3277 -0.8908 34 1 4.7140 3.2818 2.4006 35 1 5.6012 4.4804 4.6454 36 1 4.7144 2.9997 5.0806 37 1 8.8686 3.0813 7.1954 38 1 7.5611 1.0657 8.8252 39 1 8.7103 2.7571 10.8308 40 1 10.6866 2.3420 9.4746 41 1 7.3607 4.0201 10.2984 42 1 5.2820 5.3225 10.4985 43 1 3.8194 5.6215 8.5413 44 1 4.4389 4.6277 6.3765 45 1 6.0309 0.1674 0.3594 46 1 6.0304 0.1682 2.1395 47 1 3.7244 1.0751 2.1386 48 1 3.8047 -0.4641 1.2483 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_2989392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:18:49 Heat of formation + Delta-G solvation = -159.474432 kcal Electronic energy + Delta-G solvation = -31325.642933 eV Core-core repulsion = 26926.724837 eV Total energy + Delta-G solvation = -4398.918097 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.99497 -41.57224 -40.86291 -39.24811 -38.37752 -37.61783 -37.52761 -34.99261 -32.79821 -32.02482 -31.86482 -31.06192 -29.21902 -28.45281 -26.69654 -24.94177 -23.79257 -23.66363 -22.64550 -22.07911 -21.71697 -20.27500 -19.50170 -18.70179 -18.49540 -18.11832 -17.82765 -17.51657 -17.50310 -16.96140 -16.83950 -16.42696 -16.24219 -15.84025 -15.71329 -15.36650 -15.07793 -15.03503 -14.87366 -14.80739 -14.29520 -14.19238 -13.93054 -13.77048 -13.70465 -13.44621 -13.29999 -13.19970 -13.05904 -12.94921 -12.53440 -12.23229 -12.14432 -12.08210 -11.88658 -11.86966 -11.68485 -11.64662 -11.43728 -11.20037 -10.99593 -10.53715 -10.17509 -9.98395 -9.22189 -4.95305 0.22954 0.41544 1.08823 1.28809 1.43717 1.49945 1.54396 1.71407 1.93395 2.60399 2.69598 3.44644 3.45214 3.49816 3.59453 3.66619 3.71752 3.87993 3.93292 3.96179 3.99504 4.05680 4.11457 4.13154 4.24731 4.26942 4.30675 4.32494 4.37258 4.38348 4.40940 4.53266 4.60642 4.66830 4.67237 4.77251 4.94149 4.97762 5.03424 5.07571 5.11433 5.22616 5.27263 5.28130 5.35211 5.37165 5.45963 5.52644 5.75577 6.26592 6.44030 6.52485 6.64435 7.10656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.462 3.538 4 O -0.536 6.536 5 C -0.075 4.075 6 H 0.131 0.869 7 C -0.103 4.103 8 C -0.115 4.115 9 C 0.143 3.857 10 H 0.077 0.923 11 N -0.706 5.706 12 C 0.514 3.486 13 O -0.565 6.565 14 C 0.035 3.965 15 O -0.310 6.310 16 C 0.129 3.871 17 C -0.164 4.164 18 C -0.083 4.083 19 O -0.549 6.549 20 Si 0.783 3.217 21 C -0.088 4.088 22 C -0.154 4.154 23 C -0.075 4.075 24 C -0.213 4.213 25 C -0.125 4.125 26 C -0.102 4.102 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.126 0.874 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.414 0.586 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.381 0.619 39 H -0.265 1.265 40 H -0.307 1.307 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.153 0.847 44 H 0.151 0.849 45 H 0.095 0.905 46 H 0.051 0.949 47 H 0.062 0.938 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.029 4.024 -0.783 6.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.307 3.693 4 O -0.426 6.426 5 C -0.094 4.094 6 H 0.149 0.851 7 C -0.140 4.140 8 C -0.152 4.152 9 C 0.039 3.961 10 H 0.095 0.905 11 N -0.361 5.361 12 C 0.300 3.700 13 O -0.443 6.443 14 C -0.043 4.043 15 O -0.223 6.223 16 C 0.083 3.917 17 C -0.165 4.165 18 C -0.190 4.190 19 O -0.356 6.356 20 Si 0.687 3.313 21 C -0.105 4.105 22 C -0.172 4.172 23 C -0.093 4.093 24 C -0.232 4.232 25 C -0.164 4.164 26 C -0.140 4.140 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.144 0.856 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.252 0.748 35 H 0.140 0.860 36 H 0.132 0.868 37 H 0.115 0.885 38 H 0.230 0.770 39 H -0.191 1.191 40 H -0.236 1.236 41 H 0.164 0.836 42 H 0.168 0.832 43 H 0.170 0.830 44 H 0.169 0.831 45 H 0.113 0.887 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.663 3.472 -0.709 5.096 hybrid contribution -1.538 -0.884 -0.137 1.779 sum -5.201 2.588 -0.846 5.870 Atomic orbital electron populations 1.23502 0.75162 1.05476 1.02432 1.86516 1.24656 1.33383 1.83555 1.24349 0.92971 0.80969 0.71028 1.90670 1.68069 1.37234 1.46626 1.21236 0.85068 1.00124 1.02989 0.85107 1.21442 0.95858 0.92870 1.03854 1.21803 0.94167 1.02397 0.96881 1.21064 0.98978 0.91965 0.84094 0.90450 1.45894 1.26516 1.55045 1.08665 1.20433 0.84213 0.80260 0.85098 1.90774 1.24742 1.43565 1.85239 1.22705 0.94149 1.03090 0.84401 1.86190 1.47970 1.71441 1.16726 1.19077 0.94225 0.93471 0.84896 1.19716 0.98734 1.05064 0.92941 1.25223 0.99118 0.81541 1.13146 1.86649 1.79303 1.23381 1.46300 0.94036 0.74811 0.89492 0.72961 1.21197 0.97631 0.96038 0.95658 1.21402 0.94732 1.00648 1.00388 1.21392 0.99703 0.96685 0.91515 1.21576 0.97405 1.03064 1.01115 1.21876 0.95004 0.96200 1.03309 1.21409 0.95622 1.01318 0.95610 0.92065 0.91989 0.85619 0.91202 0.90340 0.89476 0.88104 0.74836 0.86024 0.86809 0.88543 0.77043 1.19082 1.23595 0.83567 0.83163 0.82975 0.83098 0.88672 0.92974 0.91911 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.56 113.37 1.20 1.14 16 2 O -0.36 -0.54 10.47 -51.41 -0.54 -1.08 16 3 C 0.46 0.82 7.25 71.23 0.52 1.33 16 4 O -0.54 -3.94 15.73 21.95 0.35 -3.60 16 5 C -0.08 0.33 2.63 -11.54 -0.03 0.30 16 6 H 0.13 -1.01 8.14 -2.39 -0.02 -1.03 16 7 C -0.10 0.61 4.32 30.59 0.13 0.74 16 8 C -0.11 0.88 5.61 30.59 0.17 1.05 16 9 C 0.14 -0.40 2.78 44.99 0.13 -0.27 16 10 H 0.08 0.13 7.58 -2.39 -0.02 0.11 16 11 N -0.71 2.01 4.23 -442.53 -1.87 0.14 16 12 C 0.51 2.30 7.87 87.66 0.69 2.99 16 13 O -0.57 -8.89 16.16 15.99 0.26 -8.64 16 14 C 0.03 -0.01 5.22 71.24 0.37 0.37 16 15 O -0.31 -2.70 9.00 -73.38 -0.66 -3.37 16 16 C 0.13 0.68 6.66 22.51 0.15 0.83 16 17 C -0.16 -0.79 5.27 -19.77 -0.10 -0.90 16 18 C -0.08 -0.58 2.38 71.24 0.17 -0.41 16 19 O -0.55 -5.98 12.88 -148.98 -1.92 -7.90 16 20 Si 0.78 1.30 30.25 68.60 2.07 3.37 16 21 C -0.09 -0.02 8.66 22.25 0.19 0.17 16 22 C -0.15 0.34 10.04 22.28 0.22 0.57 16 23 C -0.08 0.20 10.04 22.26 0.22 0.43 16 24 C -0.21 0.13 9.04 22.37 0.20 0.33 16 25 C -0.13 0.31 5.60 30.58 0.17 0.48 16 26 C -0.10 0.38 4.98 30.58 0.15 0.53 16 27 H 0.06 -0.10 8.13 -2.39 -0.02 -0.12 16 28 H 0.06 -0.10 8.13 -2.39 -0.02 -0.12 16 29 H 0.13 -0.89 8.14 -2.38 -0.02 -0.91 16 30 H 0.07 -0.40 6.46 -2.39 -0.02 -0.42 16 31 H 0.08 -0.37 8.10 -2.38 -0.02 -0.38 16 32 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 33 H 0.10 -0.99 8.14 -2.39 -0.02 -1.01 16 34 H 0.41 -3.38 6.87 -92.71 -0.64 -4.02 16 35 H 0.12 -0.80 7.65 -2.39 -0.02 -0.81 16 36 H 0.11 -0.60 7.67 -2.39 -0.02 -0.62 16 37 H 0.10 0.98 7.83 -2.39 -0.02 0.97 16 38 H 0.38 1.31 8.70 -74.06 -0.64 0.67 16 39 H -0.26 -0.60 6.68 99.48 0.66 0.07 16 40 H -0.31 -3.03 7.11 99.48 0.71 -2.32 16 41 H 0.15 -0.45 4.86 -2.91 -0.01 -0.46 16 42 H 0.15 -1.04 8.06 -2.91 -0.02 -1.07 16 43 H 0.15 -1.20 8.06 -2.91 -0.02 -1.22 16 44 H 0.15 -0.94 6.30 -2.91 -0.02 -0.96 16 45 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 46 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 47 H 0.06 -0.17 7.60 -2.39 -0.02 -0.19 16 48 H 0.08 -0.24 8.11 -2.39 -0.02 -0.26 16 Total: 0.00 -28.53 390.39 1.95 -26.58 By element: Atomic # 1 Polarization: -14.92 SS G_CDS: -0.29 Total: -15.21 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 4.55 Total: 9.70 kcal Atomic # 7 Polarization: 2.01 SS G_CDS: -1.87 Total: 0.14 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -2.51 Total: -24.58 kcal Atomic # 14 Polarization: 1.30 SS G_CDS: 2.07 Total: 3.37 kcal Total: -28.53 1.95 -26.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_2989392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.897 kcal (2) G-P(sol) polarization free energy of solvation -28.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds