Wall clock time and date at job start Tue Mar 9 2021 13:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99765 * 2 1 4 4 O 1.20825 * 119.99968 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99674 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.47423 * 59.99873 * 5 3 2 7 7 C 1.53002 * 109.46950 * 180.02562 * 5 3 2 8 8 C 1.53004 * 109.47256 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.46779 * 299.99811 * 8 7 5 10 10 H 1.09000 * 109.46633 * 179.97438 * 9 8 7 11 11 N 1.46499 * 109.47313 * 299.99835 * 9 8 7 12 12 C 1.34768 * 119.99861 * 205.00317 * 11 9 8 13 13 O 1.21282 * 120.00218 * 359.97438 * 12 11 9 14 14 C 1.50703 * 120.00041 * 180.02562 * 12 11 9 15 15 C 1.52998 * 109.47232 * 179.97438 * 14 12 11 16 16 O 1.42904 * 109.47038 * 179.97438 * 15 14 12 17 17 C 1.35895 * 116.99898 * 180.02562 * 16 15 14 18 18 C 1.38729 * 120.05540 * 179.97438 * 17 16 15 19 19 C 1.38143 * 119.94836 * 179.97438 * 18 17 16 20 20 C 1.38267 * 120.05400 * 0.02562 * 19 18 17 21 21 C 1.50702 * 119.94890 * 180.02562 * 20 19 18 22 22 O 1.42903 * 109.47007 * 300.00359 * 21 20 19 23 23 Si 1.86300 * 109.47301 * 179.97438 * 21 20 19 24 24 C 1.38273 * 120.10994 * 0.27376 * 20 19 18 25 25 C 1.38148 * 120.05257 * 359.44983 * 24 20 19 26 26 C 1.53002 * 109.47073 * 60.00077 * 9 8 7 27 27 C 1.52999 * 109.46953 * 299.99724 * 26 9 8 28 28 H 1.09002 * 109.47500 * 299.99655 * 1 2 3 29 29 H 1.08994 * 109.47272 * 60.00468 * 1 2 3 30 30 H 1.09006 * 109.47105 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47243 * 59.99663 * 7 5 3 32 32 H 1.08996 * 109.47123 * 300.00049 * 7 5 3 33 33 H 1.08992 * 109.47111 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.46747 * 60.00082 * 8 7 5 35 35 H 0.97003 * 119.99979 * 25.00314 * 11 9 8 36 36 H 1.09005 * 109.47104 * 59.99639 * 14 12 11 37 37 H 1.08999 * 109.46907 * 299.99693 * 14 12 11 38 38 H 1.09000 * 109.46980 * 60.00374 * 15 14 12 39 39 H 1.08999 * 109.47163 * 299.99829 * 15 14 12 40 40 H 1.08003 * 120.03138 * 359.96112 * 18 17 16 41 41 H 1.07996 * 119.97787 * 180.02562 * 19 18 17 42 42 H 1.09004 * 109.46923 * 59.99928 * 21 20 19 43 43 H 0.96700 * 113.99509 * 299.99566 * 22 21 20 44 44 H 1.48502 * 109.99691 * 180.02562 * 23 21 20 45 45 H 1.48495 * 109.99988 * 301.31758 * 23 21 20 46 46 H 1.07998 * 119.96920 * 179.72632 * 24 20 19 47 47 H 1.07995 * 120.02290 * 180.27084 * 25 24 20 48 48 H 1.09006 * 109.47207 * 59.99695 * 26 9 8 49 49 H 1.08996 * 109.47123 * 179.97438 * 26 9 8 50 50 H 1.08992 * 109.47112 * 300.00000 * 27 26 9 51 51 H 1.09001 * 109.46934 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8891 7 6 4.0001 2.7421 0.0011 8 6 5.5280 2.8223 0.0011 9 6 6.0751 2.1283 1.2501 10 1 7.1636 2.1850 1.2498 11 7 5.5513 2.7919 2.4465 12 6 6.2326 2.7244 3.6073 13 8 7.2791 2.1137 3.6616 14 6 5.6936 3.4066 4.8382 15 6 6.6508 3.1764 6.0094 16 8 6.1399 3.8238 7.1764 17 6 6.8761 3.7166 8.3136 18 6 6.4396 4.3211 9.4835 19 6 7.1895 4.2102 10.6384 20 6 8.3745 3.4979 10.6289 21 6 9.1904 3.3780 11.8902 22 8 9.5734 4.6808 12.3355 23 14 10.7158 2.3643 11.5492 24 6 8.8149 2.8998 9.4626 25 6 8.0657 3.0029 8.3065 26 6 5.6413 0.6610 1.2496 27 6 4.1134 0.5810 1.2496 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.6100 3.2360 0.8910 32 1 3.6107 3.2364 -0.8889 33 1 5.8370 3.8675 0.0019 34 1 5.9176 2.3285 -0.8892 35 1 4.7141 3.2800 2.4031 36 1 4.7147 2.9942 5.0830 37 1 5.6004 4.4761 4.6495 38 1 7.6298 3.5886 5.7649 39 1 6.7435 2.1069 6.1980 40 1 5.5143 4.8781 9.4915 41 1 6.8499 4.6802 11.5495 42 1 8.5957 2.8904 12.6627 43 1 10.1063 5.1738 11.6967 44 1 11.5286 2.2382 12.7856 45 1 10.3308 1.0178 11.0555 46 1 9.7431 2.3477 9.4567 47 1 8.4080 2.5319 7.3970 48 1 6.0310 0.1672 0.3593 49 1 6.0314 0.1665 2.1391 50 1 3.7237 1.0747 2.1397 51 1 3.8043 -0.4643 1.2488 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_4549602.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:19:04 Heat of formation + Delta-G solvation = -171.050265 kcal Electronic energy + Delta-G solvation = -32171.670349 eV Core-core repulsion = 27616.712667 eV Total energy + Delta-G solvation = -4554.957681 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.181 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.94837 -41.39354 -40.95405 -39.35771 -38.90478 -37.54687 -37.16767 -34.91057 -33.44589 -32.12984 -31.88950 -31.62388 -30.96742 -28.61944 -26.64856 -25.69547 -24.74033 -23.73541 -23.56363 -22.29813 -21.83711 -21.58899 -20.20351 -19.55307 -18.65483 -18.34923 -17.94080 -17.77388 -17.53655 -17.48670 -17.07545 -16.66286 -16.44167 -16.27006 -15.97916 -15.69346 -15.53745 -15.16328 -14.94959 -14.72662 -14.66494 -14.48047 -14.28086 -14.24092 -14.07497 -13.86849 -13.62782 -13.53675 -13.27719 -13.17321 -12.94985 -12.87201 -12.79377 -12.20114 -12.19726 -12.06082 -12.04586 -11.86634 -11.79037 -11.69625 -11.62803 -11.40502 -11.17410 -11.00293 -10.42399 -10.08549 -10.05258 -9.21608 -5.01211 0.27352 0.29740 1.09677 1.32177 1.55828 1.61714 1.70542 1.74992 1.94622 2.52439 2.65397 3.47045 3.53797 3.56606 3.60761 3.68952 3.71815 3.82726 3.88169 3.89793 3.96918 4.04443 4.05804 4.15424 4.25298 4.25715 4.27264 4.33042 4.35693 4.40779 4.43043 4.44881 4.50382 4.62741 4.66525 4.67826 4.68193 4.77822 4.80143 4.96561 4.98936 5.06426 5.10438 5.14384 5.17238 5.26422 5.27979 5.29706 5.36786 5.48625 5.53380 5.71443 6.31822 6.47146 6.65144 6.78266 7.17316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.461 3.539 4 O -0.538 6.538 5 C -0.075 4.075 6 H 0.131 0.869 7 C -0.103 4.103 8 C -0.116 4.116 9 C 0.141 3.859 10 H 0.081 0.919 11 N -0.712 5.712 12 C 0.522 3.478 13 O -0.578 6.578 14 C -0.137 4.137 15 C 0.074 3.926 16 O -0.323 6.323 17 C 0.123 3.877 18 C -0.159 4.159 19 C -0.060 4.060 20 C -0.162 4.162 21 C -0.066 4.066 22 O -0.556 6.556 23 Si 0.771 3.229 24 C -0.080 4.080 25 C -0.209 4.209 26 C -0.124 4.124 27 C -0.103 4.103 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.126 0.874 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.411 0.589 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.107 0.893 43 H 0.395 0.605 44 H -0.298 1.298 45 H -0.288 1.288 46 H 0.144 0.856 47 H 0.141 0.859 48 H 0.093 0.907 49 H 0.058 0.942 50 H 0.062 0.938 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.493 0.037 -5.375 5.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.306 3.694 4 O -0.428 6.428 5 C -0.094 4.094 6 H 0.148 0.852 7 C -0.141 4.141 8 C -0.154 4.154 9 C 0.037 3.963 10 H 0.099 0.901 11 N -0.365 5.365 12 C 0.309 3.691 13 O -0.458 6.458 14 C -0.176 4.176 15 C -0.001 4.001 16 O -0.237 6.237 17 C 0.077 3.923 18 C -0.178 4.178 19 C -0.078 4.078 20 C -0.162 4.162 21 C -0.177 4.177 22 O -0.364 6.364 23 Si 0.677 3.323 24 C -0.097 4.097 25 C -0.227 4.227 26 C -0.162 4.162 27 C -0.140 4.140 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.145 0.855 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.249 0.751 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.124 0.876 43 H 0.245 0.755 44 H -0.226 1.226 45 H -0.216 1.216 46 H 0.162 0.838 47 H 0.159 0.841 48 H 0.111 0.889 49 H 0.076 0.924 50 H 0.081 0.919 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.065 -0.905 -4.693 4.780 hybrid contribution -1.332 0.041 0.197 1.347 sum -1.397 -0.864 -4.496 4.786 Atomic orbital electron populations 1.23501 0.75196 1.05500 1.02389 1.86514 1.24626 1.33370 1.83569 1.24406 0.93069 0.80947 0.70997 1.90672 1.68122 1.37308 1.46656 1.21243 0.84934 1.00072 1.03166 0.85155 1.21438 0.96097 0.92919 1.03637 1.21803 0.93973 1.02327 0.97282 1.21049 0.99074 0.91942 0.84232 0.90062 1.46074 1.26514 1.54729 1.09208 1.20511 0.83780 0.79683 0.85145 1.90733 1.24808 1.44574 1.85664 1.21463 1.01145 1.04576 0.90449 1.22453 0.97610 0.97403 0.82667 1.85962 1.48466 1.72049 1.17203 1.19181 0.90899 0.95577 0.86608 1.20665 1.02622 1.03898 0.90607 1.20960 0.92984 0.96135 0.97691 1.20333 0.97829 1.02282 0.95785 1.25053 1.05502 0.91758 0.95348 1.86456 1.74875 1.28055 1.47003 0.93760 0.78263 0.78170 0.82075 1.21001 0.99311 0.97791 0.91605 1.21421 0.96170 1.04490 1.00628 1.21882 0.94664 0.96221 1.03483 1.21429 0.95945 1.01213 0.95439 0.92126 0.92048 0.85535 0.91369 0.90687 0.89724 0.88257 0.75103 0.86164 0.85738 0.91228 0.91696 0.84183 0.84320 0.87595 0.75528 1.22614 1.21563 0.83837 0.84113 0.88852 0.92361 0.91904 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.56 113.37 1.20 1.14 16 2 O -0.36 -0.47 10.47 -51.43 -0.54 -1.00 16 3 C 0.46 0.79 7.26 71.24 0.52 1.31 16 4 O -0.54 -4.15 15.73 21.97 0.35 -3.81 16 5 C -0.08 0.37 2.63 -11.54 -0.03 0.34 16 6 H 0.13 -1.07 8.14 -2.39 -0.02 -1.09 16 7 C -0.10 0.63 4.32 30.60 0.13 0.76 16 8 C -0.12 0.99 5.61 30.60 0.17 1.16 16 9 C 0.14 -0.71 2.78 44.99 0.13 -0.59 16 10 H 0.08 -0.12 7.58 -2.39 -0.02 -0.14 16 11 N -0.71 3.58 4.23 -442.53 -1.87 1.71 16 12 C 0.52 -0.25 7.79 87.66 0.68 0.43 16 13 O -0.58 -4.36 15.65 -3.04 -0.05 -4.41 16 14 C -0.14 0.57 6.07 29.85 0.18 0.75 16 15 C 0.07 0.04 4.03 71.98 0.29 0.33 16 16 O -0.32 -1.13 10.14 -92.37 -0.94 -2.07 16 17 C 0.12 0.54 6.69 22.50 0.15 0.69 16 18 C -0.16 -0.55 9.99 22.36 0.22 -0.32 16 19 C -0.06 -0.16 9.60 22.25 0.21 0.06 16 20 C -0.16 -0.30 5.39 -19.85 -0.11 -0.41 16 21 C -0.07 -0.05 2.82 71.24 0.20 0.15 16 22 O -0.56 -0.65 12.77 -148.98 -1.90 -2.55 16 23 Si 0.77 -0.56 29.79 68.60 2.04 1.48 16 24 C -0.08 -0.10 8.66 22.26 0.19 0.10 16 25 C -0.21 -0.58 9.04 22.37 0.20 -0.37 16 26 C -0.12 0.61 5.60 30.59 0.17 0.78 16 27 C -0.10 0.52 4.98 30.59 0.15 0.67 16 28 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 29 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 30 H 0.13 -0.92 8.14 -2.38 -0.02 -0.94 16 31 H 0.07 -0.37 6.46 -2.39 -0.02 -0.38 16 32 H 0.07 -0.33 8.10 -2.39 -0.02 -0.35 16 33 H 0.08 -0.75 8.14 -2.39 -0.02 -0.77 16 34 H 0.10 -1.06 8.14 -2.39 -0.02 -1.08 16 35 H 0.41 -3.56 6.87 -92.71 -0.64 -4.20 16 36 H 0.12 -0.83 8.14 -2.38 -0.02 -0.85 16 37 H 0.12 -0.93 8.14 -2.39 -0.02 -0.95 16 38 H 0.07 0.08 7.62 -2.39 -0.02 0.06 16 39 H 0.06 0.12 7.62 -2.39 -0.02 0.10 16 40 H 0.14 0.16 8.06 -2.91 -0.02 0.13 16 41 H 0.14 0.12 8.06 -2.91 -0.02 0.10 16 42 H 0.11 0.19 7.96 -2.38 -0.02 0.17 16 43 H 0.39 -2.65 8.70 -74.06 -0.64 -3.29 16 44 H -0.30 -1.94 7.11 99.48 0.71 -1.23 16 45 H -0.29 -1.21 7.11 99.48 0.71 -0.51 16 46 H 0.14 -0.39 4.87 -2.91 -0.01 -0.41 16 47 H 0.14 0.11 6.30 -2.91 -0.02 0.09 16 48 H 0.09 -0.70 8.14 -2.38 -0.02 -0.72 16 49 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 50 H 0.06 -0.24 7.60 -2.39 -0.02 -0.26 16 51 H 0.08 -0.35 8.11 -2.39 -0.02 -0.37 16 Total: 0.00 -22.28 412.11 1.47 -20.81 By element: Atomic # 1 Polarization: -16.84 SS G_CDS: -0.29 Total: -17.12 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 4.67 Total: 6.97 kcal Atomic # 7 Polarization: 3.58 SS G_CDS: -1.87 Total: 1.71 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -3.08 Total: -13.84 kcal Atomic # 14 Polarization: -0.56 SS G_CDS: 2.04 Total: 1.48 kcal Total: -22.28 1.47 -20.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_4549602.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.242 kcal (2) G-P(sol) polarization free energy of solvation -22.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds