Wall clock time and date at job start Tue Mar 9 2021 13:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 116.99579 * 2 1 4 4 O 1.20819 * 120.00199 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99505 * 179.97438 * 3 2 1 6 6 H 1.08992 * 109.47518 * 300.00344 * 5 3 2 7 7 C 1.53002 * 109.46783 * 60.00307 * 5 3 2 8 8 C 1.52997 * 109.46817 * 179.97438 * 7 5 3 9 9 C 1.53005 * 109.47452 * 300.00239 * 8 7 5 10 10 H 1.09000 * 109.47360 * 180.02562 * 9 8 7 11 11 N 1.46506 * 109.46632 * 299.99871 * 9 8 7 12 12 C 1.34777 * 119.99949 * 204.99556 * 11 9 8 13 13 O 1.21288 * 119.99883 * 0.02562 * 12 11 9 14 14 C 1.50696 * 120.00081 * 180.02562 * 12 11 9 15 15 C 1.53006 * 109.46785 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.46882 * 179.97438 * 15 14 12 17 17 O 1.42897 * 109.47236 * 180.02562 * 16 15 14 18 18 C 1.35902 * 117.00003 * 180.02562 * 17 16 15 19 19 C 1.38707 * 120.05551 * 180.02562 * 18 17 16 20 20 C 1.38167 * 119.94531 * 180.02562 * 19 18 17 21 21 C 1.50699 * 119.96970 * 180.02562 * 20 19 18 22 22 O 1.42901 * 109.47013 * 299.99438 * 21 20 19 23 23 Si 1.86302 * 109.46836 * 179.97438 * 21 20 19 24 24 C 1.38241 * 120.05621 * 359.97438 * 20 19 18 25 25 C 1.38293 * 120.11048 * 359.97438 * 24 20 19 26 26 C 1.38122 * 120.05419 * 359.77022 * 25 24 20 27 27 C 1.52999 * 109.47159 * 59.99536 * 9 8 7 28 28 C 1.52997 * 109.47317 * 300.00546 * 27 9 8 29 29 H 1.09000 * 109.47246 * 299.99833 * 1 2 3 30 30 H 1.09003 * 109.47398 * 60.00020 * 1 2 3 31 31 H 1.09001 * 109.46940 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47662 * 299.99813 * 7 5 3 33 33 H 1.09002 * 109.47075 * 60.00319 * 7 5 3 34 34 H 1.09002 * 109.47153 * 60.00231 * 8 7 5 35 35 H 1.09001 * 109.47289 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99856 * 25.00214 * 11 9 8 37 37 H 1.08990 * 109.47220 * 300.00183 * 14 12 11 38 38 H 1.08997 * 109.47263 * 60.00729 * 14 12 11 39 39 H 1.08990 * 109.47350 * 300.00053 * 15 14 12 40 40 H 1.08999 * 109.47334 * 60.00636 * 15 14 12 41 41 H 1.09003 * 109.46985 * 300.00469 * 16 15 14 42 42 H 1.09002 * 109.47065 * 60.00225 * 16 15 14 43 43 H 1.08002 * 120.02799 * 0.02562 * 19 18 17 44 44 H 1.08993 * 109.47687 * 59.99812 * 21 20 19 45 45 H 0.96702 * 114.00027 * 180.02562 * 22 21 20 46 46 H 1.48501 * 110.00106 * 59.99714 * 23 21 20 47 47 H 1.48504 * 109.99971 * 181.31850 * 23 21 20 48 48 H 1.07993 * 119.94765 * 180.02562 * 24 20 19 49 49 H 1.07998 * 119.97209 * 180.02562 * 25 24 20 50 50 H 1.08004 * 120.02733 * 180.27868 * 26 25 24 51 51 H 1.08996 * 109.46929 * 179.97438 * 27 9 8 52 52 H 1.09002 * 109.46716 * 60.00455 * 27 9 8 53 53 H 1.09002 * 109.47153 * 299.99641 * 28 27 9 54 54 H 1.09001 * 109.46832 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7810 0.8907 7 6 4.1138 0.5811 -1.2484 8 6 5.6416 0.6617 -1.2481 9 6 6.0750 2.1291 -1.2484 10 1 7.1635 2.1865 -1.2487 11 7 5.5512 2.7926 -2.4450 12 6 6.1714 3.8835 -2.9367 13 8 7.1636 4.3156 -2.3888 14 6 5.6323 4.5664 -4.1671 15 6 6.5148 5.7679 -4.5115 16 6 5.9678 6.4609 -5.7611 17 8 6.7923 7.5827 -6.0832 18 6 6.4418 8.3130 -7.1744 19 6 7.1982 9.4151 -7.5450 20 6 6.8395 10.1562 -8.6545 21 6 7.6611 11.3533 -9.0580 22 8 7.6687 12.3065 -7.9934 23 14 6.9214 12.1291 -10.5817 24 6 5.7281 9.7999 -9.3954 25 6 4.9729 8.7009 -9.0286 26 6 5.3304 7.9537 -7.9233 27 6 5.5275 2.8229 0.0005 28 6 3.9996 2.7423 0.0002 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.8048 -0.4641 -1.2484 33 1 3.7244 1.0751 -2.1386 34 1 6.0314 0.1680 -0.3579 35 1 6.0317 0.1678 -2.1381 36 1 4.7579 2.4469 -2.8832 37 1 5.6324 3.8650 -5.0013 38 1 4.6140 4.9056 -3.9776 39 1 6.5152 6.4694 -3.6773 40 1 7.5331 5.4284 -4.7012 41 1 5.9678 5.7591 -6.5951 42 1 4.9495 6.8004 -5.5719 43 1 8.0668 9.6936 -6.9667 44 1 8.6826 11.0380 -9.2706 45 1 8.1797 13.1051 -8.1840 46 1 5.5284 12.5633 -10.3054 47 1 7.7407 13.2919 -11.0084 48 1 5.4495 10.3802 -10.2625 49 1 4.1054 8.4243 -9.6093 50 1 4.7430 7.0928 -7.6399 51 1 5.8366 3.8681 0.0004 52 1 5.9172 2.3291 0.8906 53 1 3.6099 3.2360 -0.8900 54 1 3.6096 3.2361 0.8902 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_4549616.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:19:17 Heat of formation + Delta-G solvation = -177.067756 kcal Electronic energy + Delta-G solvation = -33788.346925 eV Core-core repulsion = 29077.590687 eV Total energy + Delta-G solvation = -4710.756238 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.197 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.93582 -41.28913 -40.99463 -39.27217 -38.97076 -37.55513 -37.48019 -34.90215 -34.86122 -32.59017 -31.91906 -31.67794 -31.06364 -28.73129 -28.09546 -26.81071 -24.91339 -23.81179 -23.68345 -23.51897 -21.89963 -21.73850 -21.53357 -20.18052 -18.97294 -18.64730 -18.60072 -18.27733 -17.80637 -17.52140 -17.47293 -17.26957 -16.98986 -16.64469 -16.52047 -15.86373 -15.78295 -15.68424 -15.26223 -15.03519 -14.72879 -14.61703 -14.53974 -14.30763 -14.20524 -13.93628 -13.87774 -13.63007 -13.50168 -13.41890 -13.27537 -13.24432 -13.05658 -12.92340 -12.67448 -12.42062 -12.25306 -12.21665 -12.02649 -11.96940 -11.85481 -11.66776 -11.62428 -11.60763 -11.36807 -11.20199 -10.91392 -10.58463 -10.05385 -9.88958 -9.24606 -4.92583 0.21083 0.40705 1.10361 1.27667 1.61011 1.64461 1.71037 1.92030 1.98980 2.41516 2.64193 3.35875 3.45372 3.62228 3.64067 3.68397 3.75936 3.84978 3.87507 3.93263 3.99270 4.07712 4.11730 4.14863 4.18736 4.26651 4.27645 4.28860 4.34053 4.34698 4.37002 4.40392 4.41052 4.43130 4.52027 4.60944 4.65886 4.69087 4.69957 4.79704 4.98133 4.99003 5.00694 5.05541 5.10844 5.14614 5.16037 5.26285 5.27757 5.29339 5.37040 5.38106 5.46611 5.57199 5.73530 6.42314 6.54680 6.55587 6.66268 7.27242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.462 3.538 4 O -0.542 6.542 5 C -0.075 4.075 6 H 0.130 0.870 7 C -0.107 4.107 8 C -0.115 4.115 9 C 0.140 3.860 10 H 0.075 0.925 11 N -0.714 5.714 12 C 0.509 3.491 13 O -0.586 6.586 14 C -0.131 4.131 15 C -0.100 4.100 16 C 0.057 3.943 17 O -0.338 6.338 18 C 0.116 3.884 19 C -0.153 4.153 20 C -0.048 4.048 21 C -0.096 4.096 22 O -0.561 6.561 23 Si 0.779 3.221 24 C -0.162 4.162 25 C -0.072 4.072 26 C -0.207 4.207 27 C -0.125 4.125 28 C -0.096 4.096 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.129 0.871 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.412 0.588 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.092 0.908 45 H 0.395 0.605 46 H -0.296 1.296 47 H -0.285 1.285 48 H 0.147 0.853 49 H 0.161 0.839 50 H 0.155 0.845 51 H 0.049 0.951 52 H 0.090 0.910 53 H 0.063 0.937 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.367 -8.611 -5.015 10.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.307 3.693 4 O -0.432 6.432 5 C -0.094 4.094 6 H 0.147 0.853 7 C -0.144 4.144 8 C -0.153 4.153 9 C 0.036 3.964 10 H 0.093 0.907 11 N -0.367 5.367 12 C 0.297 3.703 13 O -0.466 6.466 14 C -0.170 4.170 15 C -0.138 4.138 16 C -0.017 4.017 17 O -0.252 6.252 18 C 0.070 3.930 19 C -0.171 4.171 20 C -0.049 4.049 21 C -0.203 4.203 22 O -0.371 6.371 23 Si 0.684 3.316 24 C -0.180 4.180 25 C -0.090 4.090 26 C -0.225 4.225 27 C -0.163 4.163 28 C -0.134 4.134 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.250 0.750 37 H 0.147 0.853 38 H 0.138 0.862 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.134 0.866 44 H 0.110 0.890 45 H 0.245 0.755 46 H -0.224 1.224 47 H -0.212 1.212 48 H 0.164 0.836 49 H 0.179 0.821 50 H 0.172 0.828 51 H 0.068 0.932 52 H 0.108 0.892 53 H 0.082 0.918 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.447 -7.777 -4.543 9.644 hybrid contribution -0.047 1.172 1.160 1.649 sum -3.493 -6.606 -3.383 8.203 Atomic orbital electron populations 1.23510 0.75207 1.05578 1.02309 1.86509 1.24561 1.33005 1.83538 1.24371 0.92984 0.80984 0.70972 1.90679 1.68172 1.37576 1.46734 1.21223 0.85067 0.99169 1.03922 0.85262 1.21540 0.95876 1.02016 0.94998 1.21801 0.94747 0.93482 1.05273 1.21011 0.98678 0.92761 0.83976 0.90669 1.46087 1.31703 1.29303 1.29599 1.21081 0.82969 0.80355 0.85883 1.90732 1.27968 1.65490 1.62445 1.21546 1.01430 0.97607 0.96431 1.21135 1.00003 0.96471 0.96196 1.23003 0.94233 0.86263 0.98209 1.86048 1.54208 1.41845 1.43136 1.19187 0.94528 0.91879 0.87365 1.20320 1.02042 0.95625 0.99154 1.19295 0.95790 0.94811 0.94974 1.25218 1.04165 0.91115 0.99841 1.86556 1.76727 1.32850 1.40922 0.93986 0.75992 0.82295 0.79350 1.21143 0.95470 0.99943 1.01409 1.21298 0.99211 0.93085 0.95384 1.21605 0.98371 1.04010 0.98533 1.21874 0.94528 1.01014 0.98916 1.21314 0.95634 0.93698 1.02757 0.92436 0.91988 0.85282 0.88647 0.91061 0.88358 0.89244 0.75023 0.85298 0.86183 0.92483 0.91812 0.89505 0.90309 0.86563 0.88985 0.75464 1.22394 1.21240 0.83626 0.82097 0.82766 0.93180 0.89193 0.91829 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.08 10.56 113.37 1.20 1.12 16 2 O -0.36 -0.03 10.47 -51.40 -0.54 -0.57 16 3 C 0.46 0.83 7.25 71.24 0.52 1.34 16 4 O -0.54 -4.86 15.73 21.99 0.35 -4.52 16 5 C -0.07 0.33 2.63 -11.54 -0.03 0.30 16 6 H 0.13 -0.97 8.14 -2.39 -0.02 -0.99 16 7 C -0.11 0.93 4.96 30.59 0.15 1.08 16 8 C -0.12 1.06 5.61 30.60 0.17 1.23 16 9 C 0.14 -0.47 2.78 44.99 0.13 -0.34 16 10 H 0.08 0.08 7.58 -2.39 -0.02 0.06 16 11 N -0.71 2.85 4.23 -442.51 -1.87 0.98 16 12 C 0.51 0.83 7.79 87.66 0.68 1.51 16 13 O -0.59 -7.04 15.64 -3.06 -0.05 -7.09 16 14 C -0.13 0.67 5.70 29.85 0.17 0.84 16 15 C -0.10 -0.14 4.87 30.60 0.15 0.01 16 16 C 0.06 -0.04 4.74 71.98 0.34 0.30 16 17 O -0.34 -2.67 10.14 -92.44 -0.94 -3.61 16 18 C 0.12 0.84 6.69 22.51 0.15 0.99 16 19 C -0.15 -1.39 9.55 22.36 0.21 -1.17 16 20 C -0.05 -0.28 5.42 -19.88 -0.11 -0.39 16 21 C -0.10 -0.23 2.81 71.24 0.20 -0.03 16 22 O -0.56 -3.22 12.74 -148.98 -1.90 -5.12 16 23 Si 0.78 -0.75 29.79 68.60 2.04 1.29 16 24 C -0.16 -0.31 8.67 22.28 0.19 -0.12 16 25 C -0.07 0.02 10.04 22.26 0.22 0.24 16 26 C -0.21 -0.32 9.04 22.37 0.20 -0.11 16 27 C -0.12 0.20 5.60 30.59 0.17 0.37 16 28 C -0.10 0.12 4.33 30.59 0.13 0.25 16 29 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 30 H 0.06 -0.15 8.13 -2.39 -0.02 -0.17 16 31 H 0.13 -1.09 8.14 -2.39 -0.02 -1.11 16 32 H 0.09 -0.94 8.11 -2.39 -0.02 -0.96 16 33 H 0.07 -0.68 6.50 -2.39 -0.02 -0.69 16 34 H 0.10 -1.07 8.14 -2.39 -0.02 -1.09 16 35 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 36 H 0.41 -3.83 6.87 -92.71 -0.64 -4.46 16 37 H 0.13 -1.43 8.14 -2.39 -0.02 -1.45 16 38 H 0.12 -1.11 8.14 -2.39 -0.02 -1.13 16 39 H 0.06 0.37 8.10 -2.39 -0.02 0.35 16 40 H 0.06 0.33 8.10 -2.39 -0.02 0.31 16 41 H 0.09 -0.45 7.65 -2.39 -0.02 -0.47 16 42 H 0.08 -0.30 7.67 -2.39 -0.02 -0.32 16 43 H 0.12 1.25 8.06 -2.91 -0.02 1.23 16 44 H 0.09 -0.09 7.96 -2.39 -0.02 -0.11 16 45 H 0.39 -1.13 8.74 -74.06 -0.65 -1.78 16 46 H -0.30 -1.75 7.11 99.48 0.71 -1.05 16 47 H -0.29 -0.81 7.11 99.48 0.71 -0.10 16 48 H 0.15 -0.38 4.87 -2.91 -0.01 -0.39 16 49 H 0.16 -1.08 8.06 -2.91 -0.02 -1.10 16 50 H 0.15 -0.67 6.30 -2.91 -0.02 -0.69 16 51 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 52 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 53 H 0.06 0.03 7.56 -2.39 -0.02 0.02 16 54 H 0.06 0.12 8.10 -2.39 -0.02 0.10 16 Total: 0.00 -30.09 433.65 1.62 -28.47 By element: Atomic # 1 Polarization: -16.91 SS G_CDS: -0.33 Total: -17.24 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 4.85 Total: 7.41 kcal Atomic # 7 Polarization: 2.85 SS G_CDS: -1.87 Total: 0.98 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -3.08 Total: -20.91 kcal Atomic # 14 Polarization: -0.75 SS G_CDS: 2.04 Total: 1.29 kcal Total: -30.09 1.62 -28.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_4549616.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.600 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds