Wall clock time and date at job start Tue Mar 9 2021 13:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00170 * 2 1 4 4 O 1.20825 * 119.99818 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00155 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.47221 * 59.99516 * 5 3 2 7 7 C 1.53007 * 109.47139 * 179.97438 * 5 3 2 8 8 C 1.52999 * 109.47150 * 179.97438 * 7 5 3 9 9 C 1.52998 * 109.47354 * 300.00229 * 8 7 5 10 10 H 1.08997 * 109.47596 * 179.97438 * 9 8 7 11 11 N 1.46502 * 109.47185 * 300.00056 * 9 8 7 12 12 C 1.34778 * 119.99626 * 205.00248 * 11 9 8 13 13 O 1.21274 * 120.00482 * 359.97438 * 12 11 9 14 14 C 1.50708 * 119.99543 * 179.97438 * 12 11 9 15 15 O 1.42892 * 109.46974 * 179.97438 * 14 12 11 16 16 C 1.35902 * 117.00245 * 180.02562 * 15 14 12 17 17 C 1.38706 * 120.05868 * 180.23097 * 16 15 14 18 18 C 1.38168 * 119.94323 * 180.26908 * 17 16 15 19 19 C 1.50700 * 119.97040 * 179.74598 * 18 17 16 20 20 O 1.42903 * 109.46837 * 64.73107 * 19 18 17 21 21 Si 1.86300 * 109.46849 * 184.72653 * 19 18 17 22 22 C 1.38241 * 120.05716 * 359.47889 * 18 17 16 23 23 C 1.38291 * 120.10808 * 0.29097 * 22 18 17 24 24 C 1.38126 * 120.05923 * 359.95827 * 23 22 18 25 25 C 1.53007 * 109.47179 * 59.99789 * 9 8 7 26 26 C 1.53001 * 109.46822 * 299.99489 * 5 3 2 27 27 H 1.09003 * 109.47260 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47276 * 300.00316 * 1 2 3 29 29 H 1.08999 * 109.46995 * 59.99836 * 1 2 3 30 30 H 1.09001 * 109.46917 * 60.00201 * 7 5 3 31 31 H 1.08992 * 109.46865 * 299.99893 * 7 5 3 32 32 H 1.08998 * 109.47378 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.46943 * 59.99974 * 8 7 5 34 34 H 0.96999 * 119.99652 * 24.99912 * 11 9 8 35 35 H 1.08999 * 109.46713 * 59.99843 * 14 12 11 36 36 H 1.09000 * 109.46764 * 299.99998 * 14 12 11 37 37 H 1.08003 * 120.02829 * 0.02562 * 17 16 15 38 38 H 1.08997 * 109.47760 * 304.72921 * 19 18 17 39 39 H 0.96700 * 114.00022 * 60.00263 * 20 19 18 40 40 H 1.48506 * 110.00048 * 58.68772 * 21 19 18 41 41 H 1.48502 * 109.99996 * 180.02562 * 21 19 18 42 42 H 1.08000 * 119.94850 * 180.27072 * 22 18 17 43 43 H 1.08002 * 119.96953 * 179.97438 * 23 22 18 44 44 H 1.07998 * 120.03077 * 180.02562 * 24 23 22 45 45 H 1.09001 * 109.46917 * 59.99737 * 25 9 8 46 46 H 1.09002 * 109.46993 * 179.97438 * 25 9 8 47 47 H 1.08992 * 109.47767 * 300.00062 * 26 5 3 48 48 H 1.09000 * 109.46795 * 60.00430 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8907 7 6 4.0001 2.7421 -0.0011 8 6 5.5280 2.8222 -0.0011 9 6 6.0751 2.1291 1.2484 10 1 7.1636 2.1857 1.2483 11 7 5.5512 2.7935 2.4444 12 6 6.2326 2.7267 3.6053 13 8 7.2790 2.1162 3.6601 14 6 5.6939 3.4108 4.8355 15 8 6.5877 3.1964 5.9295 16 6 6.2467 3.7505 7.1227 17 6 7.0710 3.5862 8.2260 18 6 6.7192 4.1459 9.4392 19 6 7.6115 3.9629 10.6398 20 8 8.8628 4.6125 10.4066 21 14 6.7951 4.7079 12.1396 22 6 5.5521 4.8782 9.5514 23 6 4.7309 5.0475 8.4517 24 6 5.0755 4.4857 7.2379 25 6 5.6412 0.6618 1.2489 26 6 4.1138 0.5811 1.2484 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.6108 3.2364 0.8889 31 1 3.6101 3.2359 -0.8910 32 1 5.8371 3.8674 -0.0019 33 1 5.9178 2.3277 -0.8908 34 1 4.7141 3.2816 2.4006 35 1 4.7148 2.9993 5.0806 36 1 5.6015 4.4801 4.6455 37 1 7.9852 3.0179 8.1378 38 1 7.7802 2.8994 10.8086 39 1 8.7888 5.5636 10.2484 40 1 5.4783 4.0627 12.3742 41 1 7.6654 4.5346 13.3303 42 1 5.2809 5.3187 10.4996 43 1 3.8194 5.6197 8.5420 44 1 4.4341 4.6185 6.3792 45 1 6.0309 0.1674 0.3591 46 1 6.0314 0.1679 2.1389 47 1 3.7245 1.0750 2.1386 48 1 3.8047 -0.4642 1.2483 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_4860298.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:12 Heat of formation + Delta-G solvation = -162.808532 kcal Electronic energy + Delta-G solvation = -30657.278835 eV Core-core repulsion = 26258.216161 eV Total energy + Delta-G solvation = -4399.062674 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.165 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.98681 -41.53199 -40.84334 -39.39134 -38.67161 -37.54015 -37.22317 -34.99550 -32.50223 -32.16749 -31.89176 -31.28005 -29.15491 -28.43656 -26.80956 -24.88638 -23.74989 -23.68946 -22.98506 -21.85086 -21.67620 -20.26494 -19.32017 -18.73163 -18.59277 -17.83964 -17.76595 -17.49814 -17.42634 -17.25953 -16.93876 -16.44291 -16.23894 -16.11050 -15.61756 -15.29522 -15.05692 -14.92533 -14.86762 -14.66165 -14.28770 -14.20101 -14.02180 -13.91085 -13.75023 -13.43992 -13.29312 -13.19467 -12.94251 -12.93307 -12.61376 -12.22283 -12.16020 -12.08080 -12.02499 -11.86221 -11.69731 -11.63481 -11.42968 -11.19162 -11.00912 -10.49952 -10.17669 -9.95322 -9.30238 -4.99404 0.18917 0.37379 1.09851 1.27360 1.42806 1.49623 1.65598 1.72263 1.97075 2.58800 2.65670 3.45516 3.48224 3.52838 3.60338 3.66964 3.67703 3.82800 3.94836 3.97436 4.00518 4.06603 4.10900 4.13446 4.23305 4.25552 4.27715 4.31849 4.34210 4.39350 4.41958 4.48347 4.61399 4.62382 4.67916 4.78224 4.94861 4.96187 5.04466 5.08764 5.12433 5.22842 5.23502 5.28223 5.35454 5.36123 5.43091 5.46187 5.68196 6.25007 6.43291 6.65378 6.74578 7.09736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.462 3.538 4 O -0.536 6.536 5 C -0.076 4.076 6 H 0.131 0.869 7 C -0.103 4.103 8 C -0.115 4.115 9 C 0.142 3.858 10 H 0.078 0.922 11 N -0.705 5.705 12 C 0.514 3.486 13 O -0.569 6.569 14 C 0.035 3.965 15 O -0.322 6.322 16 C 0.113 3.887 17 C -0.150 4.150 18 C -0.085 4.085 19 C -0.086 4.086 20 O -0.558 6.558 21 Si 0.795 3.205 22 C -0.155 4.155 23 C -0.070 4.070 24 C -0.204 4.204 25 C -0.126 4.126 26 C -0.102 4.102 27 H 0.125 0.875 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.414 0.586 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.396 0.604 40 H -0.281 1.281 41 H -0.301 1.301 42 H 0.152 0.848 43 H 0.163 0.837 44 H 0.158 0.842 45 H 0.094 0.906 46 H 0.053 0.947 47 H 0.063 0.937 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.472 4.061 -3.082 8.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.307 3.693 4 O -0.426 6.426 5 C -0.094 4.094 6 H 0.148 0.852 7 C -0.140 4.140 8 C -0.153 4.153 9 C 0.038 3.962 10 H 0.096 0.904 11 N -0.360 5.360 12 C 0.300 3.700 13 O -0.447 6.447 14 C -0.042 4.042 15 O -0.235 6.235 16 C 0.068 3.932 17 C -0.169 4.169 18 C -0.085 4.085 19 C -0.195 4.195 20 O -0.366 6.366 21 Si 0.700 3.300 22 C -0.172 4.172 23 C -0.088 4.088 24 C -0.222 4.222 25 C -0.164 4.164 26 C -0.140 4.140 27 H 0.144 0.856 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.253 0.747 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.129 0.871 38 H 0.117 0.883 39 H 0.246 0.754 40 H -0.208 1.208 41 H -0.229 1.229 42 H 0.169 0.831 43 H 0.181 0.819 44 H 0.176 0.824 45 H 0.113 0.887 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.884 3.046 -2.252 6.998 hybrid contribution -0.405 -0.623 -0.450 0.869 sum -6.289 2.423 -2.702 7.261 Atomic orbital electron populations 1.23502 0.75167 1.05470 1.02437 1.86516 1.24652 1.33410 1.83564 1.24355 0.92981 0.80959 0.71032 1.90669 1.68075 1.37231 1.46614 1.21239 0.85046 1.00128 1.03028 0.85170 1.21444 0.95839 0.92875 1.03879 1.21802 0.94184 1.02391 0.96899 1.21072 0.99005 0.92015 0.84074 0.90420 1.45895 1.26515 1.54980 1.08644 1.20450 0.84154 0.80228 0.85143 1.90761 1.24838 1.43762 1.85316 1.22738 0.94160 1.03320 0.84023 1.86123 1.48657 1.71768 1.16955 1.19205 0.94736 0.94385 0.84870 1.20302 1.00531 1.04594 0.91482 1.20216 0.96315 0.97528 0.94455 1.25431 0.88630 1.01626 1.03782 1.86482 1.28052 1.27645 1.94398 0.93553 0.75185 0.89113 0.72121 1.21213 0.94712 1.00967 1.00351 1.21345 0.99693 0.96797 0.90971 1.21625 0.97087 1.02293 1.01189 1.21883 0.95003 0.96136 1.03388 1.21414 0.95615 1.01336 0.95612 0.85635 0.92032 0.92016 0.91105 0.90403 0.89496 0.88164 0.74735 0.86269 0.85820 0.87079 0.88266 0.75429 1.20798 1.22932 0.83082 0.81921 0.82440 0.88714 0.92797 0.91778 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 10.56 113.37 1.20 1.13 16 2 O -0.37 -0.33 10.47 -51.42 -0.54 -0.87 16 3 C 0.46 0.51 7.26 71.24 0.52 1.02 16 4 O -0.54 -3.60 15.73 21.97 0.35 -3.25 16 5 C -0.08 0.39 2.63 -11.54 -0.03 0.36 16 6 H 0.13 -1.09 8.14 -2.39 -0.02 -1.11 16 7 C -0.10 0.69 4.32 30.60 0.13 0.82 16 8 C -0.12 0.97 5.61 30.59 0.17 1.14 16 9 C 0.14 -0.54 2.78 44.99 0.13 -0.41 16 10 H 0.08 0.05 7.58 -2.39 -0.02 0.04 16 11 N -0.71 2.87 4.23 -442.52 -1.87 1.00 16 12 C 0.51 1.58 7.87 87.66 0.69 2.27 16 13 O -0.57 -8.12 16.16 16.03 0.26 -7.86 16 14 C 0.04 -0.06 5.22 71.24 0.37 0.31 16 15 O -0.32 -2.51 9.67 -73.41 -0.71 -3.22 16 16 C 0.11 0.58 6.69 22.51 0.15 0.73 16 17 C -0.15 -1.10 9.62 22.36 0.22 -0.88 16 18 C -0.08 -0.23 5.35 -19.88 -0.11 -0.34 16 19 C -0.09 -0.19 2.80 71.24 0.20 0.01 16 20 O -0.56 -1.94 12.83 -148.98 -1.91 -3.85 16 21 Si 0.80 -1.42 29.80 68.60 2.04 0.62 16 22 C -0.16 0.31 8.67 22.28 0.19 0.50 16 23 C -0.07 0.27 10.04 22.26 0.22 0.49 16 24 C -0.20 0.36 9.04 22.37 0.20 0.57 16 25 C -0.13 0.45 5.60 30.58 0.17 0.62 16 26 C -0.10 0.49 4.98 30.58 0.15 0.64 16 27 H 0.13 -0.95 8.14 -2.39 -0.02 -0.97 16 28 H 0.06 -0.13 8.13 -2.38 -0.02 -0.15 16 29 H 0.06 -0.12 8.13 -2.39 -0.02 -0.14 16 30 H 0.07 -0.47 6.46 -2.39 -0.02 -0.49 16 31 H 0.08 -0.41 8.10 -2.39 -0.02 -0.43 16 32 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 33 H 0.10 -1.05 8.14 -2.39 -0.02 -1.07 16 34 H 0.41 -3.93 6.87 -92.71 -0.64 -4.57 16 35 H 0.12 -0.89 7.66 -2.39 -0.02 -0.91 16 36 H 0.12 -1.00 7.66 -2.39 -0.02 -1.02 16 37 H 0.11 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.10 0.44 7.96 -2.39 -0.02 0.42 16 39 H 0.40 -2.10 8.70 -74.06 -0.64 -2.74 16 40 H -0.28 -0.61 7.11 99.48 0.71 0.09 16 41 H -0.30 -1.78 7.11 99.48 0.71 -1.07 16 42 H 0.15 -1.08 4.90 -2.91 -0.01 -1.09 16 43 H 0.16 -1.65 8.06 -2.91 -0.02 -1.67 16 44 H 0.16 -1.31 6.30 -2.91 -0.02 -1.33 16 45 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 46 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 47 H 0.06 -0.26 7.60 -2.39 -0.02 -0.28 16 48 H 0.08 -0.32 8.11 -2.39 -0.02 -0.34 16 Total: 0.00 -29.36 391.28 1.94 -27.42 By element: Atomic # 1 Polarization: -18.72 SS G_CDS: -0.25 Total: -18.97 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 4.58 Total: 8.98 kcal Atomic # 7 Polarization: 2.87 SS G_CDS: -1.87 Total: 1.00 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -2.55 Total: -19.05 kcal Atomic # 14 Polarization: -1.42 SS G_CDS: 2.04 Total: 0.62 kcal Total: -29.36 1.94 -27.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_4860298.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.393 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds