Wall clock time and date at job start Tue Mar 9 2021 13:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34232 * 117.00021 * 2 1 4 4 O 1.20828 * 119.99526 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00153 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.46509 * 60.00121 * 5 3 2 7 7 C 1.52996 * 109.47310 * 180.02562 * 5 3 2 8 8 C 1.52995 * 109.47322 * 180.02562 * 7 5 3 9 9 C 1.53000 * 109.46982 * 299.99784 * 8 7 5 10 10 H 1.08998 * 109.47517 * 179.97438 * 9 8 7 11 11 N 1.46497 * 109.47428 * 300.00176 * 9 8 7 12 12 C 1.34777 * 120.00081 * 204.99849 * 11 9 8 13 13 O 1.21651 * 120.00009 * 0.02562 * 12 11 9 14 14 C 1.46992 * 120.00077 * 179.97438 * 12 11 9 15 15 C 1.35811 * 125.14104 * 180.02562 * 14 12 11 16 16 C 1.46253 * 106.08902 * 179.97438 * 15 14 12 17 17 C 1.39775 * 134.15529 * 179.97438 * 16 15 14 18 18 C 1.50702 * 120.09400 * 359.97438 * 17 16 15 19 19 O 1.42906 * 109.46850 * 74.99959 * 18 17 16 20 20 Si 1.86298 * 109.47174 * 194.99549 * 18 17 16 21 21 C 1.36631 * 119.81277 * 180.02562 * 17 16 15 22 22 C 1.38765 * 120.49845 * 359.96728 * 21 17 16 23 23 C 1.38267 * 120.67824 * 0.02562 * 22 21 17 24 24 O 1.35954 * 120.12384 * 180.02562 * 23 22 21 25 25 C 1.42904 * 117.00341 * 359.97438 * 24 23 22 26 26 C 1.39451 * 119.75476 * 359.97438 * 23 22 21 27 27 O 1.34767 * 133.24046 * 179.97438 * 26 23 22 28 28 C 1.53008 * 109.47109 * 60.00177 * 9 8 7 29 29 C 1.52996 * 109.47069 * 300.00748 * 5 3 2 30 30 H 1.08999 * 109.47015 * 299.99567 * 1 2 3 31 31 H 1.09003 * 109.47143 * 59.99687 * 1 2 3 32 32 H 1.09000 * 109.46899 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46992 * 59.99915 * 7 5 3 34 34 H 1.09005 * 109.47030 * 300.00202 * 7 5 3 35 35 H 1.09001 * 109.47493 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47475 * 59.99820 * 8 7 5 37 37 H 0.96999 * 119.99845 * 24.99458 * 11 9 8 38 38 H 1.07995 * 126.95328 * 359.94676 * 15 14 12 39 39 H 1.08997 * 109.46855 * 314.99727 * 18 17 16 40 40 H 0.96700 * 114.00248 * 59.99876 * 19 18 17 41 41 H 1.48502 * 109.99934 * 58.68488 * 20 18 17 42 42 H 1.48503 * 109.99821 * 179.97438 * 20 18 17 43 43 H 1.08003 * 119.75341 * 179.97438 * 21 17 16 44 44 H 1.08000 * 119.66540 * 179.97438 * 22 21 17 45 45 H 1.09000 * 109.46937 * 300.00491 * 25 24 23 46 46 H 1.09007 * 109.46519 * 59.99762 * 25 24 23 47 47 H 1.08995 * 109.47398 * 179.97438 * 25 24 23 48 48 H 1.08996 * 109.47027 * 59.99686 * 28 9 8 49 49 H 1.08997 * 109.47486 * 179.97438 * 28 9 8 50 50 H 1.09004 * 109.47225 * 299.98974 * 29 5 3 51 51 H 1.08994 * 109.47678 * 60.00032 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9563 0.7806 -0.8892 7 6 4.0001 2.7421 0.0011 8 6 5.5280 2.8222 0.0011 9 6 6.0751 2.1282 1.2500 10 1 7.1636 2.1848 1.2499 11 7 5.5513 2.7918 2.4465 12 6 6.2326 2.7242 3.6074 13 8 7.2827 2.1125 3.6616 14 6 5.7074 3.3905 4.8077 15 6 6.3057 3.3903 6.0269 16 6 5.4347 4.1699 6.9060 17 6 5.4867 4.5342 8.2544 18 6 6.6438 4.0918 9.1126 19 8 7.7989 4.8700 8.7926 20 14 6.2119 4.3312 10.9089 21 6 4.4849 5.2916 8.7925 22 6 3.4153 5.7032 8.0101 23 6 3.3433 5.3547 6.6740 24 8 2.2905 5.7646 5.9178 25 6 1.2923 6.5535 6.5685 26 6 4.3551 4.5822 6.1048 27 8 4.5587 4.0963 4.8644 28 6 5.6413 0.6609 1.2495 29 6 4.1129 0.5815 1.2501 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.6101 3.2360 0.8911 34 1 3.6107 3.2364 -0.8889 35 1 5.8371 3.8675 0.0010 36 1 5.9178 2.3284 -0.8891 37 1 4.7142 3.2799 2.4031 38 1 7.2360 2.9110 6.2935 39 1 6.8523 3.0383 8.9263 40 1 7.6851 5.8197 8.9346 41 1 4.9935 3.5521 11.2465 42 1 7.3448 3.8980 11.7658 43 1 4.5258 5.5722 9.8347 44 1 2.6306 6.3012 8.4495 45 1 0.8584 5.9844 7.3907 46 1 1.7462 7.4651 6.9574 47 1 0.5114 6.8131 5.8539 48 1 6.0310 0.1672 0.3594 49 1 6.0314 0.1664 2.1391 50 1 3.7229 1.0758 2.1399 51 1 3.8039 -0.4638 1.2501 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_6672420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:21:11 Heat of formation + Delta-G solvation = -154.840635 kcal Electronic energy + Delta-G solvation = -37279.644779 eV Core-core repulsion = 32305.793146 eV Total energy + Delta-G solvation = -4973.851633 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.165 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.80615 -41.98292 -41.17592 -40.57820 -39.14154 -39.07470 -37.58485 -37.01833 -35.12185 -33.69515 -32.19215 -31.93422 -31.68377 -30.71711 -28.74249 -28.45886 -26.36139 -25.58514 -24.56449 -24.02679 -23.78829 -22.30234 -21.84204 -21.78878 -20.33562 -19.94909 -19.07091 -18.71280 -18.58729 -17.89391 -17.85959 -17.77484 -17.54520 -17.03825 -16.86461 -16.68911 -16.34078 -16.17320 -15.98929 -15.77656 -15.37140 -15.03698 -14.93379 -14.74342 -14.57858 -14.51648 -14.33601 -14.17726 -13.95139 -13.76596 -13.59392 -13.46210 -13.32536 -13.30193 -13.21648 -12.98398 -12.43731 -12.31677 -12.26305 -12.14770 -12.10683 -11.92491 -11.90158 -11.72655 -11.59694 -11.48466 -11.22502 -11.05677 -10.45642 -10.33952 -9.86430 -9.03904 -5.00805 -0.71393 0.06805 0.57400 1.06153 1.15081 1.29633 1.67608 1.68042 1.85131 1.89346 1.99591 2.10968 2.36821 3.13992 3.39532 3.42219 3.53641 3.60441 3.63517 3.66719 3.78095 3.84025 3.88728 3.95850 3.98734 4.09569 4.15099 4.22478 4.24022 4.27134 4.30586 4.34852 4.37947 4.39114 4.39883 4.42898 4.55537 4.64052 4.73492 4.74798 4.79090 4.83581 4.88078 4.99735 5.01443 5.04376 5.07397 5.16607 5.18248 5.22063 5.28097 5.32659 5.39067 5.55282 6.14668 6.25407 6.61726 6.77387 6.77881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.460 3.540 4 O -0.539 6.539 5 C -0.074 4.074 6 H 0.140 0.860 7 C -0.106 4.106 8 C -0.116 4.116 9 C 0.137 3.863 10 H 0.093 0.907 11 N -0.700 5.700 12 C 0.602 3.398 13 O -0.541 6.541 14 C -0.036 4.036 15 C -0.115 4.115 16 C -0.098 4.098 17 C -0.108 4.108 18 C -0.080 4.080 19 O -0.554 6.554 20 Si 0.797 3.203 21 C -0.078 4.078 22 C -0.165 4.165 23 C 0.134 3.866 24 O -0.336 6.336 25 C 0.013 3.987 26 C 0.018 3.982 27 O -0.184 6.184 28 C -0.124 4.124 29 C -0.105 4.105 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.128 0.872 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.410 0.590 38 H 0.171 0.829 39 H 0.097 0.903 40 H 0.396 0.604 41 H -0.280 1.280 42 H -0.300 1.300 43 H 0.177 0.823 44 H 0.184 0.816 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.113 0.887 48 H 0.106 0.894 49 H 0.059 0.941 50 H 0.051 0.949 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.217 3.507 1.457 5.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.305 3.695 4 O -0.429 6.429 5 C -0.093 4.093 6 H 0.157 0.843 7 C -0.143 4.143 8 C -0.153 4.153 9 C 0.034 3.966 10 H 0.111 0.889 11 N -0.351 5.351 12 C 0.388 3.612 13 O -0.420 6.420 14 C -0.086 4.086 15 C -0.136 4.136 16 C -0.099 4.099 17 C -0.109 4.109 18 C -0.189 4.189 19 O -0.362 6.362 20 Si 0.701 3.299 21 C -0.096 4.096 22 C -0.183 4.183 23 C 0.088 3.912 24 O -0.250 6.250 25 C -0.080 4.080 26 C -0.030 4.030 27 O -0.087 6.087 28 C -0.162 4.162 29 C -0.143 4.143 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.146 0.854 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.130 0.870 37 H 0.248 0.752 38 H 0.188 0.812 39 H 0.115 0.885 40 H 0.246 0.754 41 H -0.207 1.207 42 H -0.228 1.228 43 H 0.194 0.806 44 H 0.201 0.799 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.131 0.869 48 H 0.125 0.875 49 H 0.078 0.922 50 H 0.069 0.931 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.833 2.403 1.610 4.803 hybrid contribution -0.729 -0.221 -0.431 0.875 sum -4.562 2.182 1.179 5.193 Atomic orbital electron populations 1.23508 0.75195 1.05552 1.02335 1.86510 1.24632 1.33200 1.83567 1.24411 0.93100 0.80997 0.70996 1.90673 1.68134 1.37395 1.46658 1.21239 0.85011 0.99780 1.03239 0.84279 1.21451 0.96316 0.93229 1.03350 1.21832 0.93827 1.02423 0.97248 1.21310 0.99681 0.92307 0.83325 0.88911 1.46111 1.26040 1.53854 1.09079 1.16646 0.83561 0.79372 0.81626 1.90884 1.23158 1.43685 1.84268 1.22079 0.88025 1.01324 0.97169 1.22843 1.00543 0.99635 0.90537 1.19608 0.94094 1.01108 0.95087 1.19700 0.98643 1.00805 0.91702 1.25373 0.85851 0.97494 1.10159 1.86504 1.34947 1.24040 1.90756 0.93829 0.76480 0.89243 0.70344 1.20800 0.91917 0.95830 1.01013 1.21434 1.02242 1.04568 0.90072 1.18038 0.86847 0.95536 0.90758 1.86150 1.31657 1.67968 1.39266 1.23496 0.89521 0.94747 1.00255 1.19270 0.97836 1.02582 0.83359 1.84019 1.37272 1.57206 1.30159 1.21927 0.94501 0.95622 1.04184 1.21458 0.96202 1.01420 0.95221 0.92401 0.91905 0.85359 0.92512 0.90177 0.89824 0.86989 0.75241 0.81179 0.88514 0.75430 1.20695 1.22821 0.80637 0.79903 0.90623 0.90241 0.86914 0.87519 0.92173 0.93061 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.27 10.47 -51.44 -0.54 -1.81 16 3 C 0.46 2.15 7.26 71.23 0.52 2.66 16 4 O -0.54 -5.94 15.73 21.96 0.35 -5.59 16 5 C -0.07 0.15 2.63 -11.54 -0.03 0.12 16 6 H 0.14 -0.95 8.14 -2.39 -0.02 -0.97 16 7 C -0.11 0.22 4.32 30.59 0.13 0.36 16 8 C -0.12 0.62 5.61 30.59 0.17 0.79 16 9 C 0.14 -0.15 2.78 44.99 0.13 -0.02 16 10 H 0.09 0.08 7.58 -2.39 -0.02 0.06 16 11 N -0.70 -2.14 4.23 -446.21 -1.89 -4.03 16 12 C 0.60 5.46 7.76 86.54 0.67 6.13 16 13 O -0.54 -7.64 16.49 -4.19 -0.07 -7.71 16 14 C -0.04 -0.36 7.07 24.00 0.17 -0.19 16 15 C -0.11 -1.12 10.68 23.79 0.25 -0.86 16 16 C -0.10 -0.75 6.16 -20.24 -0.12 -0.88 16 17 C -0.11 -0.21 5.26 -19.87 -0.10 -0.31 16 18 C -0.08 -0.07 2.71 71.24 0.19 0.13 16 19 O -0.55 -0.97 12.88 -148.98 -1.92 -2.89 16 20 Si 0.80 -2.84 29.92 68.60 2.05 -0.79 16 21 C -0.08 0.29 8.62 22.02 0.19 0.48 16 22 C -0.16 0.49 9.03 22.40 0.20 0.69 16 23 C 0.13 0.57 6.70 22.57 0.15 0.72 16 24 O -0.34 -1.41 10.50 -93.04 -0.98 -2.39 16 25 C 0.01 -0.08 9.81 113.37 1.11 1.03 16 26 C 0.02 0.16 7.35 23.14 0.17 0.33 16 27 O -0.18 -1.95 10.28 -13.38 -0.14 -2.08 16 28 C -0.12 0.27 5.61 30.61 0.17 0.44 16 29 C -0.11 0.14 4.98 30.61 0.15 0.30 16 30 H 0.06 0.06 8.13 -2.39 -0.02 0.04 16 31 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 32 H 0.13 -0.73 8.14 -2.39 -0.02 -0.75 16 33 H 0.06 0.06 6.46 -2.39 -0.02 0.04 16 34 H 0.08 -0.11 8.10 -2.38 -0.02 -0.13 16 35 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 36 H 0.11 -1.06 8.14 -2.39 -0.02 -1.08 16 37 H 0.41 0.83 6.58 -92.71 -0.61 0.22 16 38 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.10 0.35 7.96 -2.39 -0.02 0.33 16 40 H 0.40 -2.85 8.70 -74.06 -0.64 -3.49 16 41 H -0.28 -0.21 7.11 99.48 0.71 0.49 16 42 H -0.30 -1.34 7.11 99.48 0.71 -0.63 16 43 H 0.18 -2.01 5.07 -2.91 -0.01 -2.03 16 44 H 0.18 -1.93 6.26 -2.91 -0.02 -1.94 16 45 H 0.08 -0.68 7.66 -2.39 -0.02 -0.69 16 46 H 0.08 -0.76 7.66 -2.38 -0.02 -0.77 16 47 H 0.11 -0.86 8.14 -2.39 -0.02 -0.88 16 48 H 0.11 -0.71 8.14 -2.39 -0.02 -0.72 16 49 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 50 H 0.05 0.11 7.60 -2.38 -0.02 0.09 16 51 H 0.08 -0.15 8.11 -2.39 -0.02 -0.17 16 Total: 0.00 -27.96 418.67 1.97 -25.99 By element: Atomic # 1 Polarization: -11.59 SS G_CDS: -0.22 Total: -11.81 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 5.32 Total: 13.11 kcal Atomic # 7 Polarization: -2.14 SS G_CDS: -1.89 Total: -4.03 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -3.30 Total: -22.47 kcal Atomic # 14 Polarization: -2.84 SS G_CDS: 2.05 Total: -0.79 kcal Total: -27.96 1.97 -25.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_6672420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.850 kcal (2) G-P(sol) polarization free energy of solvation -27.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds