Wall clock time and date at job start Tue Mar 9 2021 13:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34230 * 117.00630 * 2 1 4 4 O 1.20825 * 119.99518 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00003 * 180.02562 * 3 2 1 6 6 H 1.08993 * 109.47585 * 59.99256 * 5 3 2 7 7 C 1.53001 * 109.46766 * 179.97438 * 5 3 2 8 8 C 1.53005 * 109.47062 * 179.97438 * 7 5 3 9 9 C 1.53002 * 109.46957 * 300.00097 * 8 7 5 10 10 H 1.08999 * 109.46922 * 179.97438 * 9 8 7 11 11 N 1.46503 * 109.46906 * 299.99472 * 9 8 7 12 12 C 1.34772 * 119.99923 * 204.99953 * 11 9 8 13 13 O 1.21702 * 120.00454 * 0.02562 * 12 11 9 14 14 C 1.46580 * 119.99858 * 180.02562 * 12 11 9 15 15 C 1.36654 * 125.45884 * 179.97438 * 14 12 11 16 16 C 1.37471 * 113.29917 * 179.80776 * 15 14 12 17 17 C 1.50698 * 122.45344 * 180.25990 * 16 15 14 18 18 C 1.33827 * 115.09929 * 0.42740 * 16 15 14 19 19 C 1.50696 * 124.52185 * 179.85543 * 18 16 15 20 20 O 1.42899 * 109.47314 * 46.32193 * 19 18 16 21 21 Si 1.86298 * 109.47330 * 166.32246 * 19 18 16 22 22 S 1.70611 * 110.95265 * 359.58246 * 18 16 15 23 23 C 1.52994 * 109.47353 * 59.99805 * 9 8 7 24 24 C 1.53000 * 109.46741 * 299.99208 * 5 3 2 25 25 H 1.08996 * 109.47296 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46950 * 300.00569 * 1 2 3 27 27 H 1.09005 * 109.46684 * 60.00020 * 1 2 3 28 28 H 1.08997 * 109.47370 * 59.99924 * 7 5 3 29 29 H 1.09001 * 109.46908 * 299.99552 * 7 5 3 30 30 H 1.08993 * 109.47056 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.46790 * 59.99936 * 8 7 5 32 32 H 0.96999 * 119.99968 * 25.00873 * 11 9 8 33 33 H 1.07992 * 123.35238 * 0.03744 * 15 14 12 34 34 H 1.08995 * 109.47260 * 264.35265 * 17 16 15 35 35 H 1.09002 * 109.46826 * 24.35718 * 17 16 15 36 36 H 1.09001 * 109.47197 * 144.34922 * 17 16 15 37 37 H 1.08998 * 109.46910 * 286.31973 * 19 18 16 38 38 H 0.96691 * 114.00386 * 59.99687 * 20 19 18 39 39 H 1.48492 * 110.00343 * 180.02562 * 21 19 18 40 40 H 1.48507 * 109.99831 * 301.32125 * 21 19 18 41 41 H 1.09001 * 109.47539 * 60.00324 * 23 9 8 42 42 H 1.09001 * 109.46947 * 179.97438 * 23 9 8 43 43 H 1.08997 * 109.47587 * 300.00194 * 24 5 3 44 44 H 1.09000 * 109.47018 * 60.01061 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2746 -0.0006 6 1 3.9558 0.7806 -0.8907 7 6 4.0003 2.7418 -0.0011 8 6 5.5283 2.8218 -0.0011 9 6 6.0752 2.1287 1.2485 10 1 7.1637 2.1852 1.2483 11 7 5.5514 2.7933 2.4444 12 6 6.2325 2.7265 3.6054 13 8 7.2830 2.1144 3.6603 14 6 5.7082 3.3911 4.8020 15 6 6.3038 3.3950 6.0319 16 6 5.5964 4.1003 6.9764 17 6 6.0685 4.2430 8.4004 18 6 4.4562 4.6480 6.5396 19 6 3.5170 5.4603 7.3935 20 8 4.2658 6.4114 8.1530 21 14 2.3022 6.3559 6.3013 22 16 4.2115 4.3101 4.8853 23 6 5.6413 0.6615 1.2491 24 6 4.1138 0.5809 1.2484 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 3.6110 3.2362 0.8889 29 1 3.6103 3.2357 -0.8911 30 1 5.8373 3.8670 -0.0019 31 1 5.9179 2.3274 -0.8908 32 1 4.7143 3.2814 2.4006 33 1 7.2391 2.8969 6.2402 34 1 5.5918 3.4827 9.0191 35 1 7.1505 4.1169 8.4388 36 1 5.8047 5.2327 8.7732 37 1 2.9773 4.7984 8.0707 38 1 4.7722 7.0342 7.6140 39 1 1.3707 7.1612 7.1313 40 1 3.0273 7.2378 5.3516 41 1 6.0310 0.1670 0.3593 42 1 6.0313 0.1677 2.1390 43 1 3.7245 1.0749 2.1386 44 1 3.8047 -0.4644 1.2483 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_6739946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:21:20 Heat of formation + Delta-G solvation = -125.036409 kcal Electronic energy + Delta-G solvation = -27888.451270 eV Core-core repulsion = 23898.860956 eV Total energy + Delta-G solvation = -3989.590313 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.91734 -41.11445 -40.00929 -38.96385 -37.55052 -37.41629 -34.98011 -32.54878 -31.88545 -31.18743 -30.16260 -28.60004 -26.61993 -24.94112 -24.33306 -23.71873 -22.18227 -21.72056 -20.41840 -20.11245 -19.50710 -18.60870 -17.83997 -17.79067 -17.47054 -17.30661 -16.76179 -16.62691 -16.36090 -15.95242 -15.65524 -15.29499 -14.96758 -14.87654 -14.59725 -14.51312 -14.24878 -13.90650 -13.86971 -13.69502 -13.58088 -13.27443 -13.16943 -13.14815 -12.93371 -12.88095 -12.42662 -12.35929 -12.19084 -12.06040 -11.81117 -11.77617 -11.60632 -11.41215 -11.25520 -11.14706 -10.78869 -10.24192 -9.78808 -9.41469 -5.13893 -0.68221 0.26448 0.66547 1.08101 1.14659 1.27590 1.50090 1.75843 1.83355 2.02546 2.07063 3.23234 3.49161 3.53657 3.58731 3.70440 3.72496 3.97746 4.05446 4.10206 4.17099 4.30231 4.30480 4.32852 4.34238 4.42051 4.44320 4.47016 4.56137 4.62903 4.72263 4.77694 4.82019 4.84179 4.97438 5.00310 5.07481 5.10606 5.14251 5.24947 5.29336 5.37049 5.39476 5.43833 5.47401 6.32774 6.34809 6.70174 7.01901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.462 3.538 4 O -0.535 6.535 5 C -0.075 4.075 6 H 0.134 0.866 7 C -0.106 4.106 8 C -0.118 4.118 9 C 0.140 3.860 10 H 0.084 0.916 11 N -0.710 5.710 12 C 0.591 3.409 13 O -0.566 6.566 14 C -0.281 4.281 15 C -0.060 4.060 16 C -0.099 4.099 17 C -0.105 4.105 18 C -0.237 4.237 19 C -0.033 4.033 20 O -0.529 6.529 21 Si 0.715 3.285 22 S 0.239 5.761 23 C -0.124 4.124 24 C -0.104 4.104 25 H 0.125 0.875 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.405 0.595 33 H 0.146 0.854 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.139 0.861 38 H 0.389 0.611 39 H -0.269 1.269 40 H -0.263 1.263 41 H 0.099 0.901 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.164 -1.122 -2.847 4.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.306 3.694 4 O -0.425 6.425 5 C -0.094 4.094 6 H 0.152 0.848 7 C -0.143 4.143 8 C -0.155 4.155 9 C 0.036 3.964 10 H 0.102 0.898 11 N -0.362 5.362 12 C 0.378 3.622 13 O -0.447 6.447 14 C -0.401 4.401 15 C -0.094 4.094 16 C -0.111 4.111 17 C -0.163 4.163 18 C -0.357 4.357 19 C -0.144 4.144 20 O -0.337 6.337 21 Si 0.616 3.384 22 S 0.508 5.492 23 C -0.163 4.163 24 C -0.142 4.142 25 H 0.143 0.857 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.242 0.758 33 H 0.164 0.836 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.157 0.843 38 H 0.239 0.761 39 H -0.194 1.194 40 H -0.188 1.188 41 H 0.118 0.882 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.399 -0.438 -3.693 5.761 hybrid contribution 1.448 0.493 1.498 2.141 sum -2.951 0.055 -2.196 3.679 Atomic orbital electron populations 1.23504 0.75167 1.05445 1.02470 1.86512 1.24639 1.33300 1.83571 1.24316 0.92926 0.81022 0.71093 1.90669 1.68032 1.37229 1.46541 1.21225 0.85228 0.99823 1.03120 0.84832 1.21462 0.95950 0.93220 1.03693 1.21835 0.94213 1.02345 0.97146 1.21168 0.99262 0.92247 0.83702 0.89794 1.46004 1.26045 1.54840 1.09323 1.17127 0.83420 0.79098 0.82588 1.90825 1.24211 1.44457 1.85208 1.24710 1.03760 1.12921 0.98702 1.20791 1.00519 0.97481 0.90566 1.18766 0.94845 0.98949 0.98585 1.20735 1.01193 1.04372 0.90037 1.24541 1.02606 1.08308 1.00249 1.24554 0.96690 0.93590 0.99598 1.86564 1.64503 1.46272 1.36380 0.94650 0.78994 0.85605 0.79156 1.82570 1.18083 1.45283 1.03221 1.21885 0.94910 0.95773 1.03712 1.21437 0.95807 1.01476 0.95480 0.85651 0.91933 0.92070 0.91750 0.90139 0.89794 0.87586 0.75809 0.83608 0.91008 0.91505 0.89066 0.84311 0.76123 1.19394 1.18779 0.88238 0.92464 0.92243 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 10.56 113.37 1.20 1.13 16 2 O -0.36 -0.36 10.47 -51.42 -0.54 -0.90 16 3 C 0.46 0.74 7.25 71.23 0.52 1.25 16 4 O -0.54 -3.86 15.73 21.97 0.35 -3.51 16 5 C -0.08 0.33 2.63 -11.54 -0.03 0.30 16 6 H 0.13 -1.11 8.14 -2.39 -0.02 -1.13 16 7 C -0.11 0.54 4.32 30.60 0.13 0.67 16 8 C -0.12 0.83 5.61 30.60 0.17 1.01 16 9 C 0.14 -0.34 2.78 44.99 0.13 -0.22 16 10 H 0.08 0.07 7.58 -2.39 -0.02 0.05 16 11 N -0.71 0.11 4.23 -446.60 -1.89 -1.78 16 12 C 0.59 3.65 7.75 86.42 0.67 4.32 16 13 O -0.57 -7.70 16.50 -4.36 -0.07 -7.77 16 14 C -0.28 -1.10 6.45 24.08 0.16 -0.94 16 15 C -0.06 -0.28 9.78 21.72 0.21 -0.06 16 16 C -0.10 -0.19 5.75 -21.05 -0.12 -0.31 16 17 C -0.10 -0.02 9.74 71.24 0.69 0.67 16 18 C -0.24 0.13 5.62 24.68 0.14 0.26 16 19 C -0.03 0.09 2.68 71.23 0.19 0.28 16 20 O -0.53 0.57 10.27 -148.98 -1.53 -0.96 16 21 Si 0.71 -2.27 30.96 68.60 2.12 -0.14 16 22 S 0.24 -0.42 19.33 -56.49 -1.09 -1.52 16 23 C -0.12 0.41 5.60 30.58 0.17 0.58 16 24 C -0.10 0.40 4.98 30.58 0.15 0.56 16 25 H 0.13 -0.95 8.14 -2.39 -0.02 -0.97 16 26 H 0.06 -0.13 8.13 -2.39 -0.02 -0.15 16 27 H 0.06 -0.12 8.13 -2.38 -0.02 -0.14 16 28 H 0.06 -0.25 6.46 -2.39 -0.02 -0.26 16 29 H 0.08 -0.34 8.10 -2.39 -0.02 -0.36 16 30 H 0.08 -0.61 8.14 -2.39 -0.02 -0.62 16 31 H 0.11 -1.08 8.14 -2.39 -0.02 -1.10 16 32 H 0.40 -1.34 5.98 -92.71 -0.55 -1.90 16 33 H 0.15 0.81 8.06 -2.91 -0.02 0.78 16 34 H 0.07 -0.02 8.14 -2.39 -0.02 -0.03 16 35 H 0.07 -0.02 8.10 -2.39 -0.02 -0.04 16 36 H 0.09 0.02 5.55 -2.39 -0.01 0.00 16 37 H 0.14 -0.64 7.96 -2.39 -0.02 -0.66 16 38 H 0.39 -2.32 8.70 -74.06 -0.64 -2.96 16 39 H -0.27 -0.81 7.11 99.48 0.71 -0.10 16 40 H -0.26 -0.14 7.11 99.48 0.71 0.57 16 41 H 0.10 -0.68 8.14 -2.39 -0.02 -0.70 16 42 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.06 -0.11 7.60 -2.39 -0.02 -0.13 16 44 H 0.08 -0.32 8.11 -2.39 -0.02 -0.34 16 Total: 0.00 -18.82 368.66 1.60 -17.22 By element: Atomic # 1 Polarization: -10.00 SS G_CDS: -0.12 Total: -10.12 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 4.38 Total: 9.48 kcal Atomic # 7 Polarization: 0.11 SS G_CDS: -1.89 Total: -1.78 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -1.79 Total: -13.14 kcal Atomic # 14 Polarization: -2.27 SS G_CDS: 2.12 Total: -0.14 kcal Atomic # 16 Polarization: -0.42 SS G_CDS: -1.09 Total: -1.52 kcal Total: -18.82 1.60 -17.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_6739946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.818 kcal (2) G-P(sol) polarization free energy of solvation -18.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds