Wall clock time and date at job start Tue Mar 9 2021 13:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34235 * 116.99985 * 2 1 4 4 O 1.20830 * 119.99682 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99896 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.47328 * 300.00305 * 5 3 2 7 7 C 1.53002 * 109.46999 * 60.00381 * 5 3 2 8 8 C 1.52996 * 109.46891 * 179.97438 * 7 5 3 9 9 C 1.53000 * 109.47328 * 299.99597 * 8 7 5 10 10 H 1.09002 * 109.47398 * 180.02562 * 9 8 7 11 11 N 1.46500 * 109.47023 * 300.00366 * 9 8 7 12 12 C 1.34779 * 119.99793 * 274.99565 * 11 9 8 13 13 O 1.21624 * 120.00105 * 0.02562 * 12 11 9 14 14 C 1.47269 * 119.99541 * 180.02562 * 12 11 9 15 15 C 1.36767 * 126.93639 * 180.02562 * 14 12 11 16 16 C 1.50703 * 125.80591 * 359.93909 * 15 14 12 17 17 N 1.34657 * 108.39721 * 179.97438 * 15 14 12 18 18 C 1.36451 * 110.29637 * 359.97438 * 17 15 14 19 19 C 1.50697 * 125.57463 * 180.02562 * 18 17 15 20 20 O 1.42894 * 109.47559 * 119.97660 * 19 18 17 21 21 Si 1.86307 * 109.46861 * 359.97438 * 19 18 17 22 22 C 1.34488 * 108.85704 * 359.75318 * 18 17 15 23 23 C 1.52997 * 109.47060 * 60.00126 * 9 8 7 24 24 C 1.52997 * 109.46910 * 179.97438 * 5 3 2 25 25 H 1.08997 * 109.47155 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47003 * 300.00098 * 1 2 3 27 27 H 1.08995 * 109.47740 * 59.99738 * 1 2 3 28 28 H 1.09004 * 109.47006 * 299.99757 * 7 5 3 29 29 H 1.08992 * 109.47056 * 59.99641 * 7 5 3 30 30 H 1.09004 * 109.47368 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47372 * 59.99964 * 8 7 5 32 32 H 0.97004 * 120.00223 * 94.99655 * 11 9 8 33 33 H 1.09002 * 109.47155 * 90.00307 * 16 15 14 34 34 H 1.08992 * 109.47062 * 210.00501 * 16 15 14 35 35 H 1.09004 * 109.46876 * 330.00622 * 16 15 14 36 36 H 0.97002 * 124.85738 * 179.97438 * 17 15 14 37 37 H 1.09008 * 109.47096 * 239.97820 * 19 18 17 38 38 H 0.96707 * 113.99605 * 300.00335 * 20 19 18 39 39 H 1.48499 * 109.99995 * 58.68487 * 21 19 18 40 40 H 1.48504 * 109.99770 * 180.02562 * 21 19 18 41 41 H 1.07996 * 126.83540 * 180.25852 * 22 18 17 42 42 H 1.08998 * 109.47533 * 59.99948 * 23 9 8 43 43 H 1.08996 * 109.47853 * 180.02562 * 23 9 8 44 44 H 1.09000 * 109.47140 * 60.00295 * 24 5 3 45 45 H 1.09001 * 109.47375 * 300.00278 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7805 0.8891 7 6 4.1128 0.5816 -1.2503 8 6 5.6406 0.6623 -1.2511 9 6 6.0740 2.1296 -1.2513 10 1 7.1625 2.1871 -1.2524 11 7 5.5492 2.7936 -2.4471 12 6 6.2298 2.7267 -3.6085 13 8 7.2794 2.1148 -3.6639 14 6 5.7025 3.3947 -4.8104 15 6 6.2713 3.4182 -6.0540 16 6 7.5683 2.7567 -6.4429 17 7 5.4758 4.1336 -6.8717 18 6 4.3835 4.5875 -6.1915 19 6 3.2723 5.4221 -6.7742 20 8 2.0328 4.7232 -6.6439 21 14 3.6172 5.7442 -8.5765 22 6 4.4576 4.1632 -4.9174 23 6 5.5275 2.8229 -0.0018 24 6 4.0001 2.7421 -0.0011 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 3.8037 -0.4637 -1.2504 29 1 3.7227 1.0759 -2.1399 30 1 6.0301 0.1680 -2.1412 31 1 6.0311 0.1682 -0.3615 32 1 4.7119 3.2814 -2.4031 33 1 7.3697 1.7416 -6.7868 34 1 8.0406 3.3257 -7.2436 35 1 8.2328 2.7243 -5.5794 36 1 5.6538 4.3022 -7.8103 37 1 3.2123 6.3708 -6.2406 38 1 2.0142 3.8680 -7.0952 39 1 3.7329 4.4577 -9.3092 40 1 2.5288 6.5670 -9.1627 41 1 3.7439 4.3527 -4.1294 42 1 5.9178 2.3289 0.8880 43 1 5.8357 3.8684 -0.0020 44 1 3.6107 3.2364 0.8889 45 1 3.6100 3.2360 -0.8910 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14474850_9865296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:21:59 Heat of formation + Delta-G solvation = -117.221505 kcal Electronic energy + Delta-G solvation = -28351.781490 eV Core-core repulsion = 24336.178040 eV Total energy + Delta-G solvation = -4015.603451 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.51074 -41.86447 -40.64917 -38.82749 -37.92149 -37.52400 -34.83103 -32.81174 -32.51139 -31.86392 -30.97469 -28.93402 -28.58611 -25.80602 -24.83887 -23.71839 -23.52410 -21.83008 -21.52574 -20.82302 -20.08389 -18.76843 -18.64650 -17.91443 -17.78116 -17.55900 -16.99304 -16.69410 -16.56637 -16.20353 -15.65204 -15.39804 -15.21175 -14.98504 -14.65155 -14.54707 -14.51316 -14.29363 -13.98223 -13.86817 -13.82194 -13.62949 -13.36944 -13.24434 -13.10668 -12.93849 -12.77673 -12.61749 -12.18200 -12.16339 -12.03353 -11.86744 -11.61320 -11.37733 -11.15257 -10.97640 -10.63353 -10.09056 -9.79818 -9.16196 -5.08375 0.71670 1.08600 1.09760 1.27683 1.44581 1.71674 1.80784 2.05123 2.46667 2.55907 3.29778 3.48324 3.61476 3.65798 3.70105 3.87833 3.97698 4.07887 4.11108 4.18253 4.23714 4.25583 4.26541 4.37985 4.42624 4.45493 4.50675 4.52893 4.65287 4.68063 4.73095 4.76113 4.82033 4.98929 5.06325 5.07382 5.11796 5.14852 5.24594 5.30172 5.31638 5.37350 5.64664 5.68730 5.84820 6.37719 6.43899 6.65201 6.66926 7.38466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.461 3.539 4 O -0.538 6.538 5 C -0.074 4.074 6 H 0.134 0.866 7 C -0.101 4.101 8 C -0.122 4.122 9 C 0.143 3.857 10 H 0.081 0.919 11 N -0.713 5.713 12 C 0.588 3.412 13 O -0.582 6.582 14 C -0.266 4.266 15 C 0.120 3.880 16 C -0.096 4.096 17 N -0.534 5.534 18 C -0.020 4.020 19 C -0.051 4.051 20 O -0.541 6.541 21 Si 0.760 3.240 22 C -0.142 4.142 23 C -0.116 4.116 24 C -0.103 4.103 25 H 0.127 0.873 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.404 0.596 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.427 0.573 37 H 0.137 0.863 38 H 0.386 0.614 39 H -0.274 1.274 40 H -0.293 1.293 41 H 0.148 0.852 42 H 0.103 0.897 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.529 0.271 -1.314 2.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.306 3.694 4 O -0.428 6.428 5 C -0.093 4.093 6 H 0.152 0.848 7 C -0.139 4.139 8 C -0.161 4.161 9 C 0.038 3.962 10 H 0.099 0.901 11 N -0.365 5.365 12 C 0.378 3.622 13 O -0.464 6.464 14 C -0.275 4.275 15 C 0.000 4.000 16 C -0.153 4.153 17 N -0.134 5.134 18 C -0.129 4.129 19 C -0.160 4.160 20 O -0.349 6.349 21 Si 0.663 3.337 22 C -0.166 4.166 23 C -0.154 4.154 24 C -0.140 4.140 25 H 0.146 0.854 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.240 0.760 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.268 0.732 37 H 0.155 0.845 38 H 0.236 0.764 39 H -0.200 1.200 40 H -0.220 1.220 41 H 0.166 0.834 42 H 0.121 0.879 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.568 0.596 -1.935 2.561 hybrid contribution -1.668 -0.584 -0.165 1.775 sum -0.100 0.012 -2.100 2.103 Atomic orbital electron populations 1.23499 0.75236 1.05499 1.02342 1.86513 1.24596 1.33282 1.83586 1.24403 0.93057 0.80971 0.70969 1.90670 1.68112 1.37343 1.46668 1.21233 0.84970 0.99932 1.03137 0.84791 1.21407 0.96157 1.01089 0.95254 1.21871 0.94501 0.96260 1.03420 1.21032 0.99004 0.91940 0.84178 0.90092 1.45895 1.26292 1.55060 1.09210 1.17549 0.82971 0.78678 0.82985 1.90718 1.24573 1.45363 1.85717 1.20258 1.00489 1.12719 0.94064 1.20586 0.94639 0.95275 0.89502 1.20619 0.90799 1.00174 1.03702 1.41675 1.18006 1.41359 1.12393 1.20582 0.92632 1.06413 0.93237 1.24689 0.81460 0.96482 1.13417 1.86633 1.33611 1.37500 1.77113 0.94599 0.87697 0.80382 0.70993 1.21901 0.96940 1.01420 0.96356 1.21796 0.93915 1.02241 0.97403 1.21415 0.96232 0.93051 1.03332 0.85444 0.91982 0.92310 0.90164 0.92654 0.92552 0.88542 0.75951 0.90037 0.88846 0.89746 0.73190 0.84506 0.76414 1.20024 1.22018 0.83426 0.87880 0.90004 0.90516 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.29 10.47 -51.47 -0.54 -1.83 16 3 C 0.46 2.10 7.26 71.23 0.52 2.62 16 4 O -0.54 -5.72 15.73 21.95 0.35 -5.38 16 5 C -0.07 0.13 2.63 -11.54 -0.03 0.10 16 6 H 0.13 -0.79 8.14 -2.39 -0.02 -0.81 16 7 C -0.10 0.11 4.98 30.59 0.15 0.26 16 8 C -0.12 0.13 5.60 30.59 0.17 0.31 16 9 C 0.14 -0.05 2.78 44.99 0.13 0.07 16 10 H 0.08 0.22 7.58 -2.39 -0.02 0.21 16 11 N -0.71 -1.52 4.23 -445.95 -1.89 -3.40 16 12 C 0.59 4.44 7.77 86.62 0.67 5.11 16 13 O -0.58 -7.60 14.48 -4.11 -0.06 -7.66 16 14 C -0.27 -1.39 6.29 -19.04 -0.12 -1.51 16 15 C 0.12 0.25 7.17 41.78 0.30 0.55 16 16 C -0.10 0.02 9.88 71.24 0.70 0.72 16 17 N -0.53 1.38 5.41 -171.07 -0.93 0.45 16 18 C -0.02 0.01 6.11 40.98 0.25 0.26 16 19 C -0.05 0.14 2.98 71.23 0.21 0.36 16 20 O -0.54 -0.48 12.86 -148.98 -1.92 -2.40 16 21 Si 0.76 -4.09 30.94 68.60 2.12 -1.97 16 22 C -0.14 -0.35 10.43 23.62 0.25 -0.10 16 23 C -0.12 0.54 5.61 30.58 0.17 0.71 16 24 C -0.10 0.22 4.32 30.58 0.13 0.36 16 25 H 0.13 -0.72 8.14 -2.39 -0.02 -0.74 16 26 H 0.06 0.02 8.13 -2.38 -0.02 0.00 16 27 H 0.06 0.05 8.13 -2.39 -0.02 0.03 16 28 H 0.08 -0.10 8.11 -2.38 -0.02 -0.12 16 29 H 0.05 0.10 7.60 -2.39 -0.02 0.08 16 30 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.10 -0.46 8.14 -2.39 -0.02 -0.48 16 32 H 0.40 0.01 5.99 -92.71 -0.56 -0.54 16 33 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 34 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 35 H 0.08 0.39 6.47 -2.39 -0.02 0.38 16 36 H 0.43 -3.54 6.70 -92.71 -0.62 -4.16 16 37 H 0.14 -0.62 7.96 -2.38 -0.02 -0.64 16 38 H 0.39 -1.65 8.70 -74.05 -0.64 -2.29 16 39 H -0.27 0.60 7.11 99.48 0.71 1.31 16 40 H -0.29 -0.82 7.11 99.48 0.71 -0.11 16 41 H 0.15 0.15 7.69 -2.91 -0.02 0.13 16 42 H 0.10 -0.82 8.14 -2.39 -0.02 -0.84 16 43 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 44 H 0.08 -0.09 8.10 -2.39 -0.02 -0.11 16 45 H 0.06 -0.01 6.46 -2.39 -0.02 -0.02 16 Total: 0.00 -21.83 365.47 1.10 -20.73 By element: Atomic # 1 Polarization: -8.82 SS G_CDS: -0.75 Total: -9.56 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 4.70 Total: 11.02 kcal Atomic # 7 Polarization: -0.14 SS G_CDS: -2.81 Total: -2.95 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -2.17 Total: -17.26 kcal Atomic # 14 Polarization: -4.09 SS G_CDS: 2.12 Total: -1.97 kcal Total: -21.83 1.10 -20.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14474850_9865296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.489 kcal (2) G-P(sol) polarization free energy of solvation -21.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds