Wall clock time and date at job start Tue Mar 9 2021 13:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34233 * 117.00009 * 2 1 4 4 O 1.20820 * 120.00285 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99961 * 180.02562 * 3 2 1 6 6 C 1.52992 * 109.47265 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47339 * 179.97438 * 6 5 3 8 8 H 1.09005 * 112.84600 * 316.19862 * 7 6 5 9 9 C 1.53777 * 113.69253 * 87.46570 * 7 6 5 10 10 C 1.53778 * 87.08221 * 139.99297 * 9 7 6 11 11 H 1.09002 * 113.68900 * 89.12517 * 10 9 7 12 12 N 1.46498 * 113.61220 * 220.02018 * 10 9 7 13 13 C 1.34777 * 119.99828 * 252.21874 * 12 10 9 14 14 O 1.21573 * 119.99937 * 0.28077 * 13 12 10 15 15 C 1.47690 * 120.00256 * 180.27862 * 13 12 10 16 16 C 1.39819 * 120.16949 * 180.02562 * 15 13 12 17 17 F 1.35097 * 120.10948 * 0.02562 * 16 15 13 18 18 C 1.38330 * 119.78020 * 180.02562 * 16 15 13 19 19 C 1.38197 * 120.11537 * 359.97438 * 18 16 15 20 20 C 1.38462 * 120.34082 * 0.02562 * 19 18 16 21 21 C 1.50703 * 119.88869 * 180.02562 * 20 19 18 22 22 O 1.42902 * 109.47058 * 120.00541 * 21 20 19 23 23 Si 1.86300 * 109.47264 * 0.02562 * 21 20 19 24 24 C 1.37848 * 120.21945 * 359.72704 * 20 19 18 25 25 C 1.53779 * 113.61602 * 185.00468 * 7 6 5 26 26 H 1.09004 * 109.47463 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47166 * 300.00322 * 1 2 3 28 28 H 1.08998 * 109.47113 * 59.99821 * 1 2 3 29 29 H 1.09004 * 109.47354 * 59.99543 * 5 3 2 30 30 H 1.08999 * 109.46810 * 299.99744 * 5 3 2 31 31 H 1.09004 * 109.46902 * 59.99762 * 6 5 3 32 32 H 1.08999 * 109.47403 * 299.99877 * 6 5 3 33 33 H 1.09001 * 113.61338 * 25.44025 * 9 7 6 34 34 H 1.09000 * 113.61355 * 254.54288 * 9 7 6 35 35 H 0.97001 * 120.00384 * 72.50320 * 12 10 9 36 36 H 1.08002 * 119.93907 * 179.97438 * 18 16 15 37 37 H 1.08003 * 119.83025 * 180.02562 * 19 18 16 38 38 H 1.08996 * 109.47419 * 240.00340 * 21 20 19 39 39 H 0.96701 * 113.99624 * 180.02562 * 22 21 20 40 40 H 1.48494 * 110.00041 * 59.99902 * 23 21 20 41 41 H 1.48502 * 109.99923 * 181.31755 * 23 21 20 42 42 H 1.08005 * 120.06822 * 180.27659 * 24 20 19 43 43 H 1.08997 * 113.61777 * 105.38269 * 25 7 6 44 44 H 1.09000 * 113.68921 * 334.49118 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7420 -0.0011 7 6 5.5281 2.8221 -0.0011 8 1 5.9886 2.1205 0.6945 9 6 6.1485 2.7917 -1.4078 10 6 7.1399 3.8557 -0.9079 11 1 8.0417 3.4380 -0.4602 12 7 7.4257 4.9007 -1.8941 13 6 8.6238 4.9361 -2.5104 14 8 9.4654 4.0977 -2.2518 15 6 8.9143 5.9932 -3.5000 16 6 10.1558 6.0328 -4.1419 17 9 11.0947 5.1034 -3.8594 18 6 10.4195 7.0268 -5.0670 19 6 9.4589 7.9773 -5.3564 20 6 8.2278 7.9427 -4.7237 21 6 7.1875 8.9839 -5.0474 22 8 6.0174 8.3444 -5.5614 23 14 7.8629 10.1607 -6.3240 24 6 7.9483 6.9553 -3.8032 25 6 6.0698 4.2561 0.1214 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.9557 0.7809 -0.8908 30 1 3.9563 0.7806 0.8892 31 1 3.6107 3.2363 0.8889 32 1 3.6101 3.2360 -0.8910 33 1 5.4783 3.1518 -2.1884 34 1 6.6181 1.8403 -1.6574 35 1 6.7543 5.5697 -2.1004 36 1 11.3778 7.0601 -5.5640 37 1 9.6695 8.7511 -6.0798 38 1 6.9322 9.5359 -4.1430 39 1 5.3045 8.9557 -5.7921 40 1 8.2144 9.4199 -7.5621 41 1 6.8583 11.2110 -6.6285 42 1 6.9856 6.9280 -3.3144 43 1 6.4759 4.4869 1.1062 44 1 5.3790 5.0176 -0.2407 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475074_12335834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:23:00 Heat of formation + Delta-G solvation = -147.083963 kcal Electronic energy + Delta-G solvation = -28406.134564 eV Core-core repulsion = 24012.519594 eV Total energy + Delta-G solvation = -4393.614970 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.01926 -41.65502 -41.41893 -40.35286 -39.33213 -37.65605 -37.59482 -35.33795 -33.65629 -32.56566 -32.17964 -29.10922 -27.04025 -26.65228 -26.60501 -25.46002 -23.70173 -22.45508 -21.68574 -21.46783 -20.59329 -19.09834 -18.68041 -18.58681 -18.22530 -17.79289 -17.69491 -17.52226 -17.02343 -16.86259 -16.39316 -16.22204 -15.94052 -15.77373 -15.67415 -15.32164 -14.77840 -14.52781 -14.46423 -14.15859 -14.07740 -13.83477 -13.82058 -13.45568 -13.41413 -13.26812 -13.04818 -12.78613 -12.68495 -12.46468 -12.29874 -11.92648 -11.84914 -11.83314 -11.70770 -11.40956 -11.22428 -11.06434 -10.54609 -10.40887 -10.07133 -9.79499 -4.89865 -0.51067 -0.03550 1.14225 1.29425 1.58668 1.63336 1.76211 1.98020 2.01147 2.44374 3.03898 3.24983 3.39850 3.48346 3.51601 3.58941 3.72229 3.72720 3.83589 3.84865 4.02529 4.13301 4.14777 4.23751 4.24794 4.29389 4.35553 4.50854 4.57052 4.63781 4.66885 4.68934 4.76074 4.77060 4.82503 4.87049 4.92525 4.93933 5.05688 5.07518 5.15624 5.22700 5.32123 5.40717 5.57055 5.60195 6.36482 6.59562 6.68100 7.04094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.456 3.544 4 O -0.544 6.544 5 C -0.111 4.111 6 C -0.090 4.090 7 C -0.095 4.095 8 H 0.110 0.890 9 C -0.148 4.148 10 C 0.111 3.889 11 H 0.098 0.902 12 N -0.700 5.700 13 C 0.554 3.446 14 O -0.572 6.572 15 C -0.190 4.190 16 C 0.133 3.867 17 F -0.135 7.135 18 C -0.151 4.151 19 C -0.054 4.054 20 C -0.096 4.096 21 C -0.080 4.080 22 O -0.556 6.556 23 Si 0.758 3.242 24 C -0.026 4.026 25 C -0.130 4.130 26 H 0.127 0.873 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.121 0.879 30 H 0.128 0.872 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.414 0.586 36 H 0.170 0.830 37 H 0.166 0.834 38 H 0.109 0.891 39 H 0.398 0.602 40 H -0.296 1.296 41 H -0.288 1.288 42 H 0.158 0.842 43 H 0.083 0.917 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.581 4.957 0.516 5.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.301 3.699 4 O -0.434 6.434 5 C -0.148 4.148 6 C -0.128 4.128 7 C -0.114 4.114 8 H 0.128 0.872 9 C -0.186 4.186 10 C 0.006 3.994 11 H 0.116 0.884 12 N -0.351 5.351 13 C 0.343 3.657 14 O -0.452 6.452 15 C -0.194 4.194 16 C 0.112 3.888 17 F -0.114 7.114 18 C -0.170 4.170 19 C -0.071 4.071 20 C -0.097 4.097 21 C -0.189 4.189 22 O -0.367 6.367 23 Si 0.664 3.336 24 C -0.045 4.045 25 C -0.168 4.168 26 H 0.145 0.855 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.139 0.861 30 H 0.146 0.854 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.252 0.748 36 H 0.187 0.813 37 H 0.183 0.817 38 H 0.127 0.873 39 H 0.249 0.751 40 H -0.223 1.223 41 H -0.215 1.215 42 H 0.175 0.825 43 H 0.102 0.898 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.945 4.415 0.047 4.825 hybrid contribution -1.554 -0.270 -0.270 1.601 sum -3.499 4.145 -0.223 5.429 Atomic orbital electron populations 1.23489 0.75243 1.05478 1.02343 1.86518 1.24697 1.33579 1.83743 1.24582 0.93571 0.80808 0.70933 1.90666 1.68379 1.37391 1.47006 1.21568 0.84877 1.00578 1.07759 1.21317 0.94412 0.93781 1.03296 1.22311 0.94127 0.97745 0.97237 0.87174 1.23583 0.97981 0.99286 0.97768 1.22654 0.97803 0.89011 0.89887 0.88370 1.45817 1.15135 1.32293 1.41847 1.18334 0.82523 0.84037 0.80848 1.90827 1.47793 1.41312 1.65306 1.20098 0.95804 1.00597 1.02939 1.18187 0.85786 0.88371 0.96440 1.91556 1.63513 1.64071 1.92223 1.21370 1.03033 0.94133 0.98447 1.21333 0.91707 0.97166 0.96924 1.19511 0.95025 0.97589 0.97545 1.24916 0.87989 0.98782 1.07178 1.86530 1.26172 1.38338 1.85650 0.94245 0.86075 0.76141 0.77164 1.21178 0.97657 0.90640 0.94986 1.23379 0.96581 0.97631 0.99258 0.85501 0.92082 0.92194 0.86057 0.85406 0.91156 0.91618 0.89247 0.91286 0.74813 0.81296 0.81700 0.87323 0.75052 1.22321 1.21514 0.82480 0.89800 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.37 -1.08 10.57 -51.45 -0.54 -1.63 16 3 C 0.46 1.53 7.96 71.24 0.57 2.10 16 4 O -0.54 -5.36 15.73 21.98 0.35 -5.01 16 5 C -0.11 0.46 5.80 29.85 0.17 0.64 16 6 C -0.09 0.34 4.34 30.59 0.13 0.47 16 7 C -0.10 0.53 3.65 -10.27 -0.04 0.49 16 8 H 0.11 -0.79 8.13 -2.38 -0.02 -0.81 16 9 C -0.15 0.35 7.43 31.12 0.23 0.58 16 10 C 0.11 -0.01 4.24 45.52 0.19 0.18 16 11 H 0.10 0.44 7.46 -2.39 -0.02 0.42 16 12 N -0.70 -0.59 5.31 -443.06 -2.35 -2.94 16 13 C 0.55 4.76 7.77 86.74 0.67 5.43 16 14 O -0.57 -10.12 14.94 -3.95 -0.06 -10.18 16 15 C -0.19 -0.98 5.88 -20.05 -0.12 -1.10 16 16 C 0.13 0.91 7.29 22.67 0.17 1.08 16 17 F -0.14 -1.81 15.55 44.97 0.70 -1.11 16 18 C -0.15 0.03 10.01 22.28 0.22 0.26 16 19 C -0.05 0.19 8.66 22.31 0.19 0.38 16 20 C -0.10 0.27 5.42 -19.90 -0.11 0.16 16 21 C -0.08 0.52 2.81 71.24 0.20 0.72 16 22 O -0.56 2.03 12.73 -148.98 -1.90 0.14 16 23 Si 0.76 -5.06 29.77 68.60 2.04 -3.01 16 24 C -0.03 0.03 9.09 22.52 0.20 0.23 16 25 C -0.13 0.67 7.39 31.12 0.23 0.90 16 26 H 0.13 -0.77 8.14 -2.39 -0.02 -0.79 16 27 H 0.06 -0.01 8.14 -2.38 -0.02 -0.03 16 28 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 29 H 0.12 -0.81 8.14 -2.38 -0.02 -0.83 16 30 H 0.13 -1.02 8.14 -2.39 -0.02 -1.04 16 31 H 0.07 -0.14 8.10 -2.38 -0.02 -0.16 16 32 H 0.07 -0.11 7.81 -2.39 -0.02 -0.13 16 33 H 0.09 -0.24 7.90 -2.39 -0.02 -0.26 16 34 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 35 H 0.41 -2.11 6.76 -92.71 -0.63 -2.74 16 36 H 0.17 -0.82 8.06 -2.91 -0.02 -0.84 16 37 H 0.17 -1.47 4.86 -2.91 -0.01 -1.48 16 38 H 0.11 -1.24 7.96 -2.39 -0.02 -1.25 16 39 H 0.40 -4.38 8.74 -74.06 -0.65 -5.03 16 40 H -0.30 -0.22 7.11 99.48 0.71 0.49 16 41 H -0.29 0.45 7.11 99.48 0.71 1.16 16 42 H 0.16 -0.97 6.41 -2.91 -0.02 -0.99 16 43 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 44 H 0.10 -0.69 8.08 -2.39 -0.02 -0.71 16 Total: 0.00 -27.80 374.35 2.17 -25.63 By element: Atomic # 1 Polarization: -15.41 SS G_CDS: -0.18 Total: -15.59 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 4.12 Total: 13.70 kcal Atomic # 7 Polarization: -0.59 SS G_CDS: -2.35 Total: -2.94 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -2.15 Total: -16.68 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.70 Total: -1.11 kcal Atomic # 14 Polarization: -5.06 SS G_CDS: 2.04 Total: -3.01 kcal Total: -27.80 2.17 -25.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_12335834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.453 kcal (2) G-P(sol) polarization free energy of solvation -27.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds