Wall clock time and date at job start Tue Mar 9 2021 13:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00018 * 2 1 4 4 O 1.20826 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00046 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47212 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.47482 * 179.97438 * 6 5 3 8 8 H 1.09002 * 112.85191 * 314.67044 * 7 6 5 9 9 C 1.53783 * 113.61248 * 85.86354 * 7 6 5 10 10 C 1.53954 * 87.02151 * 139.95692 * 9 7 6 11 11 H 1.09002 * 113.54449 * 89.18508 * 10 9 7 12 12 N 1.46507 * 113.74534 * 220.05998 * 10 9 7 13 13 C 1.34778 * 119.99504 * 252.59623 * 12 10 9 14 14 O 1.21694 * 120.00167 * 359.97438 * 13 12 10 15 15 C 1.46429 * 119.99498 * 179.97438 * 13 12 10 16 16 C 1.34814 * 119.99926 * 179.97438 * 15 13 12 17 17 C 1.47202 * 120.00204 * 180.02562 * 16 15 13 18 18 C 1.39839 * 120.16923 * 359.71617 * 17 16 15 19 19 C 1.37892 * 119.82696 * 179.76697 * 18 17 16 20 20 C 1.38403 * 120.16765 * 0.49391 * 19 18 17 21 21 C 1.50700 * 119.82647 * 179.75738 * 20 19 18 22 22 O 1.42901 * 109.46922 * 120.02344 * 21 20 19 23 23 Si 1.86303 * 109.46875 * 0.02794 * 21 20 19 24 24 C 1.38402 * 120.34839 * 359.78881 * 20 19 18 25 25 C 1.37896 * 120.16580 * 359.95018 * 24 20 19 26 26 C 1.53785 * 113.61859 * 183.47213 * 7 6 5 27 27 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47630 * 300.00318 * 1 2 3 29 29 H 1.08998 * 109.47321 * 60.00129 * 1 2 3 30 30 H 1.09002 * 109.47060 * 299.99765 * 5 3 2 31 31 H 1.09001 * 109.47380 * 59.99853 * 5 3 2 32 32 H 1.09002 * 109.47153 * 299.99998 * 6 5 3 33 33 H 1.08998 * 109.47533 * 59.99628 * 6 5 3 34 34 H 1.08998 * 113.61499 * 254.52816 * 9 7 6 35 35 H 1.08992 * 113.61922 * 25.43189 * 9 7 6 36 36 H 0.96989 * 119.99767 * 72.58574 * 12 10 9 37 37 H 1.07992 * 120.00009 * 359.97438 * 15 13 12 38 38 H 1.07998 * 119.99402 * 359.97438 * 16 15 13 39 39 H 1.08009 * 120.08481 * 0.02562 * 18 17 16 40 40 H 1.08002 * 119.91590 * 180.25731 * 19 18 17 41 41 H 1.08990 * 109.47524 * 240.02479 * 21 20 19 42 42 H 0.96703 * 114.00168 * 300.00396 * 22 21 20 43 43 H 1.48506 * 109.99846 * 179.97438 * 23 21 20 44 44 H 1.48497 * 110.00057 * 301.31534 * 23 21 20 45 45 H 1.07990 * 119.91639 * 179.97438 * 24 20 19 46 46 H 1.08002 * 120.08077 * 180.02562 * 25 24 20 47 47 H 1.08996 * 113.60914 * 334.56443 * 26 7 6 48 48 H 1.08992 * 113.61746 * 105.47098 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 6 5.5279 2.8222 -0.0011 8 1 5.9876 2.1394 0.7136 9 6 6.1484 2.7525 -1.4064 10 6 7.1396 3.8319 -0.9348 11 1 8.0410 3.4250 -0.4763 12 7 7.4268 4.8517 -1.9467 13 6 8.6232 4.8670 -2.5672 14 8 9.4649 4.0341 -2.2867 15 6 8.9100 5.8860 -3.5790 16 6 10.1068 5.9017 -4.1994 17 6 10.3954 6.9263 -5.2161 18 6 9.4286 7.8815 -5.5455 19 6 9.7082 8.8410 -6.4954 20 6 10.9382 8.8541 -7.1298 21 6 11.2336 9.9030 -8.1707 22 8 12.3620 10.6775 -7.7596 23 14 9.7536 11.0174 -8.3668 24 6 11.8982 7.9086 -6.8135 25 6 11.6355 6.9459 -5.8618 26 6 6.0695 4.2590 0.0838 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 3.9563 0.7806 0.8892 31 1 3.9557 0.7809 -0.8908 32 1 3.6100 3.2360 -0.8911 33 1 3.6107 3.2365 0.8888 34 1 6.6183 1.7945 -1.6292 35 1 5.4784 3.0903 -2.1969 36 1 6.7560 5.5156 -2.1700 37 1 8.1628 6.6248 -3.8282 38 1 10.8540 5.1630 -3.9498 39 1 8.4668 7.8701 -5.0540 40 1 8.9640 9.5819 -6.7479 41 1 11.4525 9.4189 -9.1224 42 1 12.2377 11.1376 -6.9182 43 1 10.0324 12.0567 -9.3903 44 1 8.5658 10.2193 -8.7632 45 1 12.8555 7.9250 -7.3131 46 1 12.3857 6.2090 -5.6158 47 1 5.3778 5.0096 -0.2986 48 1 6.4756 4.5155 1.0622 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475074_12360594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:23:56 Heat of formation + Delta-G solvation = -92.498242 kcal Electronic energy + Delta-G solvation = -27901.170507 eV Core-core repulsion = 23695.612767 eV Total energy + Delta-G solvation = -4205.557739 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.166 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.57702 -41.15535 -40.58175 -39.51656 -37.77124 -37.62775 -35.16530 -35.05239 -33.29201 -32.19781 -31.20932 -29.11698 -27.50287 -26.71796 -26.46224 -24.48075 -23.95070 -22.82542 -21.91507 -21.43244 -20.96709 -20.10257 -18.82542 -18.60404 -18.06557 -17.68773 -17.52122 -17.33692 -16.87560 -16.53904 -16.22688 -16.14836 -15.96440 -15.67763 -15.30093 -15.12240 -14.93889 -14.57125 -14.52059 -14.17486 -14.12762 -13.81882 -13.79821 -13.37734 -13.35472 -13.25425 -13.03046 -13.01377 -12.68162 -12.28799 -12.25515 -12.03426 -11.89796 -11.81534 -11.70357 -11.68967 -11.37837 -11.34874 -11.18045 -10.96340 -10.43827 -10.03316 -9.98618 -9.23348 -5.00176 -0.54921 0.39295 0.88983 1.15426 1.30998 1.63181 1.77934 1.96851 2.23784 2.25305 2.81840 3.47928 3.54140 3.55401 3.59284 3.68523 3.74868 3.82240 3.87445 3.89360 3.94769 4.14415 4.20510 4.21759 4.25143 4.27232 4.31033 4.35898 4.44361 4.51345 4.54954 4.65734 4.70142 4.71164 4.81404 4.84018 4.89629 4.95466 4.97996 5.07902 5.09849 5.14468 5.17276 5.25730 5.36970 5.38786 5.45101 5.47919 5.60250 5.66434 5.90013 6.57693 6.69316 6.75399 7.23907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.456 3.544 4 O -0.544 6.544 5 C -0.110 4.110 6 C -0.090 4.090 7 C -0.098 4.098 8 H 0.107 0.893 9 C -0.146 4.146 10 C 0.112 3.888 11 H 0.094 0.906 12 N -0.702 5.702 13 C 0.541 3.459 14 O -0.594 6.594 15 C -0.209 4.209 16 C -0.022 4.022 17 C -0.081 4.081 18 C -0.095 4.095 19 C -0.122 4.122 20 C -0.112 4.112 21 C -0.079 4.079 22 O -0.556 6.556 23 Si 0.781 3.219 24 C -0.108 4.108 25 C -0.103 4.103 26 C -0.132 4.132 27 H 0.127 0.873 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.417 0.583 37 H 0.164 0.836 38 H 0.121 0.879 39 H 0.158 0.842 40 H 0.150 0.850 41 H 0.106 0.894 42 H 0.396 0.604 43 H -0.303 1.303 44 H -0.282 1.282 45 H 0.128 0.872 46 H 0.136 0.864 47 H 0.099 0.901 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.612 1.545 2.197 4.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C 0.301 3.699 4 O -0.434 6.434 5 C -0.147 4.147 6 C -0.128 4.128 7 C -0.117 4.117 8 H 0.125 0.875 9 C -0.185 4.185 10 C 0.007 3.993 11 H 0.112 0.888 12 N -0.352 5.352 13 C 0.331 3.669 14 O -0.477 6.477 15 C -0.229 4.229 16 C -0.042 4.042 17 C -0.081 4.081 18 C -0.112 4.112 19 C -0.139 4.139 20 C -0.113 4.113 21 C -0.189 4.189 22 O -0.364 6.364 23 Si 0.687 3.313 24 C -0.126 4.126 25 C -0.121 4.121 26 C -0.170 4.170 27 H 0.145 0.855 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.255 0.745 37 H 0.181 0.819 38 H 0.139 0.861 39 H 0.175 0.825 40 H 0.167 0.833 41 H 0.123 0.877 42 H 0.246 0.754 43 H -0.231 1.231 44 H -0.209 1.209 45 H 0.146 0.854 46 H 0.154 0.846 47 H 0.117 0.883 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.649 1.318 1.332 4.102 hybrid contribution -0.007 -0.393 -0.459 0.604 sum -3.656 0.925 0.873 3.871 Atomic orbital electron populations 1.23487 0.75243 1.05476 1.02350 1.86517 1.24698 1.33603 1.83748 1.24592 0.93588 0.80800 0.70937 1.90669 1.68379 1.37392 1.46998 1.21563 0.84835 1.00613 1.07731 1.21314 0.94505 0.93720 1.03256 1.22319 0.94057 0.97730 0.97551 0.87462 1.23593 0.98030 0.99234 0.97628 1.22578 0.97464 0.89661 0.89628 0.88759 1.45812 1.15844 1.33393 1.40187 1.18792 0.81917 0.84462 0.81699 1.90806 1.48107 1.42083 1.66704 1.23043 0.99750 1.00959 0.99139 1.22360 0.96478 0.94346 0.91002 1.19121 0.95094 0.96471 0.97454 1.21660 0.99655 0.93198 0.96701 1.21184 0.96269 0.99643 0.96852 1.20616 0.94864 0.97490 0.98292 1.25262 0.99950 0.96007 0.97647 1.86475 1.39112 1.65737 1.45112 0.93682 0.73304 0.77842 0.86497 1.21063 0.99662 0.94200 0.97634 1.21608 0.96453 0.98522 0.95497 1.23368 0.96806 0.97465 0.99339 0.85509 0.92114 0.92155 0.85520 0.85992 0.91516 0.91359 0.91389 0.89100 0.74528 0.81903 0.86067 0.82498 0.83307 0.87704 0.75437 1.23111 1.20902 0.85386 0.84641 0.88270 0.90191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.91 10.56 -51.41 -0.54 -1.45 16 3 C 0.46 1.29 7.96 71.24 0.57 1.85 16 4 O -0.54 -5.08 15.73 21.97 0.35 -4.74 16 5 C -0.11 0.53 5.81 29.85 0.17 0.70 16 6 C -0.09 0.40 4.33 30.59 0.13 0.53 16 7 C -0.10 0.61 3.64 -10.27 -0.04 0.58 16 8 H 0.11 -0.82 8.14 -2.39 -0.02 -0.84 16 9 C -0.15 0.58 7.45 31.18 0.23 0.81 16 10 C 0.11 -0.20 4.24 45.58 0.19 -0.01 16 11 H 0.09 0.29 7.46 -2.39 -0.02 0.27 16 12 N -0.70 1.61 5.36 -443.95 -2.38 -0.77 16 13 C 0.54 2.11 7.74 86.38 0.67 2.78 16 14 O -0.59 -7.96 15.83 -4.33 -0.07 -8.03 16 15 C -0.21 0.30 9.41 23.62 0.22 0.52 16 16 C -0.02 -0.02 9.46 23.84 0.23 0.20 16 17 C -0.08 0.03 5.87 -20.15 -0.12 -0.09 16 18 C -0.09 0.35 9.41 22.58 0.21 0.57 16 19 C -0.12 0.45 8.65 22.23 0.19 0.65 16 20 C -0.11 0.12 5.40 -19.79 -0.11 0.01 16 21 C -0.08 0.11 2.82 71.24 0.20 0.31 16 22 O -0.56 0.16 12.76 -148.98 -1.90 -1.74 16 23 Si 0.78 -2.76 29.77 68.60 2.04 -0.72 16 24 C -0.11 -0.07 9.59 22.23 0.21 0.14 16 25 C -0.10 -0.05 9.80 22.57 0.22 0.17 16 26 C -0.13 0.79 7.40 31.12 0.23 1.02 16 27 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 28 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 29 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 30 H 0.13 -1.07 8.14 -2.39 -0.02 -1.08 16 31 H 0.12 -0.92 8.14 -2.39 -0.02 -0.93 16 32 H 0.07 -0.17 7.83 -2.39 -0.02 -0.19 16 33 H 0.07 -0.16 8.10 -2.39 -0.02 -0.18 16 34 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.09 -0.42 7.92 -2.39 -0.02 -0.44 16 36 H 0.42 -3.62 8.71 -92.72 -0.81 -4.42 16 37 H 0.16 -1.45 6.07 -2.91 -0.02 -1.47 16 38 H 0.12 0.47 7.52 -2.91 -0.02 0.45 16 39 H 0.16 -1.50 6.17 -2.91 -0.02 -1.52 16 40 H 0.15 -1.22 4.85 -2.91 -0.01 -1.23 16 41 H 0.11 0.02 7.96 -2.39 -0.02 0.01 16 42 H 0.40 -3.32 8.70 -74.05 -0.64 -3.97 16 43 H -0.30 -1.39 7.11 99.48 0.71 -0.69 16 44 H -0.28 -0.15 7.11 99.48 0.71 0.55 16 45 H 0.13 0.05 8.06 -2.92 -0.02 0.02 16 46 H 0.14 -0.20 8.06 -2.91 -0.02 -0.22 16 47 H 0.10 -0.77 8.08 -2.39 -0.02 -0.79 16 48 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 Total: 0.00 -25.51 404.34 1.69 -23.82 By element: Atomic # 1 Polarization: -17.84 SS G_CDS: -0.42 Total: -18.27 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 4.62 Total: 11.91 kcal Atomic # 7 Polarization: 1.61 SS G_CDS: -2.38 Total: -0.77 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -2.17 Total: -15.97 kcal Atomic # 14 Polarization: -2.76 SS G_CDS: 2.04 Total: -0.72 kcal Total: -25.51 1.69 -23.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_12360594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.683 kcal (2) G-P(sol) polarization free energy of solvation -25.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds