Wall clock time and date at job start Tue Mar 9 2021 13:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34227 * 116.99903 * 2 1 4 4 O 1.20829 * 120.00045 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00287 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47373 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47060 * 179.97438 * 6 5 3 8 8 H 1.09004 * 112.90534 * 43.75112 * 7 6 5 9 9 C 1.53773 * 113.61440 * 174.99833 * 7 6 5 10 10 C 1.53781 * 87.08183 * 139.98451 * 9 7 6 11 11 H 1.09000 * 113.61575 * 89.20371 * 10 9 7 12 12 N 1.46506 * 113.61682 * 220.01951 * 10 9 7 13 13 C 1.34771 * 119.99948 * 203.46742 * 12 10 9 14 14 O 1.21516 * 120.00506 * 0.02562 * 13 12 10 15 15 C 1.48173 * 120.00018 * 180.02562 * 13 12 10 16 16 N 1.32720 * 119.71900 * 359.97438 * 15 13 12 17 17 C 1.31527 * 121.63967 * 180.02562 * 16 15 13 18 18 C 1.38554 * 120.90437 * 359.74068 * 17 16 15 19 19 C 1.50700 * 120.32821 * 180.26297 * 18 17 16 20 20 O 1.42897 * 109.47198 * 120.25072 * 19 18 17 21 21 Si 1.86304 * 109.46644 * 0.25323 * 19 18 17 22 22 C 1.38630 * 119.35247 * 0.51539 * 18 17 16 23 23 C 1.38592 * 118.48468 * 359.49784 * 22 18 17 24 24 C 1.53778 * 87.17048 * 334.61129 * 10 9 7 25 25 H 1.08997 * 109.46691 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46969 * 300.00062 * 1 2 3 27 27 H 1.08997 * 109.47393 * 60.00052 * 1 2 3 28 28 H 1.09001 * 109.46637 * 59.99544 * 5 3 2 29 29 H 1.09001 * 109.46947 * 300.00485 * 5 3 2 30 30 H 1.09005 * 109.46915 * 60.00392 * 6 5 3 31 31 H 1.08993 * 109.47114 * 300.00207 * 6 5 3 32 32 H 1.09004 * 113.61778 * 25.44175 * 9 7 6 33 33 H 1.08996 * 113.62122 * 254.53404 * 9 7 6 34 34 H 0.97001 * 119.99910 * 23.47569 * 12 10 9 35 35 H 1.07999 * 119.54671 * 180.02562 * 17 16 15 36 36 H 1.08999 * 109.47154 * 240.25502 * 19 18 17 37 37 H 0.96701 * 114.00000 * 300.00341 * 20 19 18 38 38 H 1.48493 * 110.00015 * 58.67953 * 21 19 18 39 39 H 1.48503 * 109.99878 * 180.02562 * 21 19 18 40 40 H 1.08002 * 120.76024 * 179.77899 * 22 18 17 41 41 H 1.08002 * 120.47050 * 180.27502 * 23 22 18 42 42 H 1.09005 * 113.61535 * 139.93761 * 24 10 9 43 43 H 1.09003 * 113.61752 * 270.83528 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2750 -0.0006 6 6 4.0001 2.7421 -0.0011 7 6 5.5280 2.8222 -0.0011 8 1 5.9897 2.1199 -0.6951 9 6 6.0697 4.2561 -0.1244 10 6 7.1384 3.8571 0.9069 11 1 8.0409 3.4391 0.4610 12 7 7.4228 4.9034 1.8922 13 6 8.6062 4.9183 2.5368 14 8 9.4376 4.0641 2.3006 15 6 8.8936 5.9762 3.5337 16 7 7.9818 6.9067 3.7871 17 6 8.1972 7.8631 4.6639 18 6 9.3910 7.9311 5.3639 19 6 9.6218 9.0292 6.3699 20 8 9.8593 8.4544 7.6564 21 14 8.1178 10.1260 6.4478 22 6 10.3733 6.9822 5.1260 23 6 10.1187 5.9861 4.1967 24 6 6.1484 2.7922 1.4076 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 3.9557 0.7810 -0.8908 29 1 3.9565 0.7806 0.8891 30 1 3.6107 3.2364 0.8890 31 1 3.6100 3.2360 -0.8910 32 1 5.3775 5.0169 0.2363 33 1 6.4772 4.4858 -1.1089 34 1 6.7592 5.5855 2.0806 35 1 7.4313 8.6029 4.8440 36 1 10.4873 9.6202 6.0706 37 1 9.1286 7.9138 7.9866 38 1 6.9247 9.3259 6.8238 39 1 8.3329 11.2134 7.4360 40 1 11.3136 7.0157 5.6562 41 1 10.8596 5.2280 3.9896 42 1 6.6194 1.8416 1.6580 43 1 5.4777 3.1519 2.1879 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475074_13287726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:25:07 Heat of formation + Delta-G solvation = -94.991358 kcal Electronic energy + Delta-G solvation = -25719.333025 eV Core-core repulsion = 21732.005025 eV Total energy + Delta-G solvation = -3987.328001 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.94207 -41.53679 -40.79305 -39.43084 -38.01034 -37.63055 -35.30220 -33.96103 -33.18305 -32.85079 -29.16249 -28.04115 -26.77121 -26.51292 -25.03865 -24.25744 -22.92496 -21.84857 -21.42364 -20.73687 -19.12947 -18.73049 -18.58725 -17.83737 -17.68325 -17.50636 -16.98026 -16.63106 -16.45799 -16.27073 -16.14263 -16.06421 -15.38403 -15.23462 -14.61117 -14.52072 -14.38200 -14.27719 -14.09847 -13.81192 -13.49477 -13.39204 -13.34219 -13.02923 -12.70830 -12.64572 -12.28508 -12.14992 -11.92596 -11.82402 -11.70167 -11.43376 -11.33213 -11.15240 -11.10505 -10.70933 -10.65156 -10.36892 -10.02223 -4.93186 -0.60757 0.07261 1.15658 1.23624 1.53284 1.59465 1.77539 1.96430 2.00632 2.65016 2.94805 3.31777 3.49111 3.51646 3.54584 3.65835 3.74680 3.78764 3.85325 3.87747 3.93114 4.11918 4.17325 4.25158 4.26099 4.30812 4.47717 4.53150 4.59671 4.65558 4.67919 4.70096 4.80376 4.87037 4.89357 4.96254 4.97836 5.07771 5.10687 5.24817 5.34251 5.37738 5.42663 5.61385 6.28815 6.41257 6.61544 6.69519 7.04576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.455 3.545 4 O -0.545 6.545 5 C -0.110 4.110 6 C -0.091 4.091 7 C -0.095 4.095 8 H 0.113 0.887 9 C -0.132 4.132 10 C 0.109 3.891 11 H 0.104 0.896 12 N -0.690 5.690 13 C 0.568 3.432 14 O -0.568 6.568 15 C 0.062 3.938 16 N -0.460 5.460 17 C 0.101 3.899 18 C -0.140 4.140 19 C -0.078 4.078 20 O -0.544 6.544 21 Si 0.765 3.235 22 C -0.053 4.053 23 C -0.116 4.116 24 C -0.146 4.146 25 H 0.127 0.873 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.419 0.581 35 H 0.186 0.814 36 H 0.138 0.862 37 H 0.388 0.612 38 H -0.277 1.277 39 H -0.299 1.299 40 H 0.161 0.839 41 H 0.149 0.851 42 H 0.073 0.927 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.230 1.041 -1.200 2.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.300 3.700 4 O -0.435 6.435 5 C -0.147 4.147 6 C -0.129 4.129 7 C -0.113 4.113 8 H 0.131 0.869 9 C -0.170 4.170 10 C 0.005 3.995 11 H 0.122 0.878 12 N -0.340 5.340 13 C 0.354 3.646 14 O -0.447 6.447 15 C -0.075 4.075 16 N -0.171 5.171 17 C -0.059 4.059 18 C -0.143 4.143 19 C -0.187 4.187 20 O -0.352 6.352 21 Si 0.670 3.330 22 C -0.078 4.078 23 C -0.137 4.137 24 C -0.185 4.185 25 H 0.145 0.855 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.147 0.853 29 H 0.140 0.860 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.256 0.744 35 H 0.203 0.797 36 H 0.156 0.844 37 H 0.238 0.762 38 H -0.203 1.203 39 H -0.227 1.227 40 H 0.179 0.821 41 H 0.166 0.834 42 H 0.091 0.909 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.763 1.258 -1.444 2.603 hybrid contribution 0.244 -0.540 1.479 1.593 sum -1.518 0.719 0.035 1.680 Atomic orbital electron populations 1.23488 0.75264 1.05478 1.02325 1.86518 1.24675 1.33571 1.83751 1.24609 0.93620 0.80797 0.70927 1.90673 1.68396 1.37429 1.47011 1.21566 0.84800 1.00491 1.07824 1.21319 0.94564 0.93823 1.03196 1.22347 0.94033 0.97647 0.97309 0.86887 1.23369 0.96710 0.97657 0.99289 1.22723 0.97986 0.88930 0.89865 0.87846 1.45860 1.16710 1.31096 1.40309 1.18138 0.82390 0.83559 0.80547 1.90779 1.47973 1.39757 1.66179 1.21135 0.92623 0.95492 0.98245 1.67517 1.31754 1.02217 1.15661 1.23011 0.96049 0.95426 0.91409 1.21689 0.95160 0.98476 0.98931 1.25207 1.14235 0.97551 0.81700 1.86611 1.46241 1.69462 1.32872 0.94107 0.73031 0.77258 0.88619 1.21734 1.00069 0.91652 0.94382 1.22286 0.97049 0.99279 0.95103 1.23599 0.97958 0.99310 0.97646 0.85472 0.92230 0.92101 0.85307 0.85960 0.91813 0.91247 0.88712 0.89708 0.74360 0.79732 0.84428 0.76241 1.20297 1.22704 0.82115 0.83360 0.90864 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.37 -1.04 10.57 -51.39 -0.54 -1.58 16 3 C 0.46 1.52 7.96 71.24 0.57 2.09 16 4 O -0.54 -5.49 15.73 21.95 0.35 -5.15 16 5 C -0.11 0.48 5.80 29.85 0.17 0.66 16 6 C -0.09 0.33 4.34 30.59 0.13 0.46 16 7 C -0.09 0.54 3.65 -10.21 -0.04 0.50 16 8 H 0.11 -0.90 8.13 -2.39 -0.02 -0.92 16 9 C -0.13 0.62 7.39 31.12 0.23 0.85 16 10 C 0.11 -0.06 4.21 45.52 0.19 0.14 16 11 H 0.10 0.27 7.50 -2.39 -0.02 0.25 16 12 N -0.69 -1.16 5.35 -442.59 -2.37 -3.53 16 13 C 0.57 3.96 7.81 86.88 0.68 4.64 16 14 O -0.57 -7.54 15.94 -3.77 -0.06 -7.60 16 15 C 0.06 0.27 6.75 41.91 0.28 0.56 16 16 N -0.46 -0.78 9.54 -184.91 -1.76 -2.54 16 17 C 0.10 -0.25 9.84 84.81 0.83 0.59 16 18 C -0.14 0.45 5.40 -19.70 -0.11 0.34 16 19 C -0.08 0.40 2.83 71.24 0.20 0.60 16 20 O -0.54 0.90 12.78 -148.98 -1.90 -1.00 16 21 Si 0.77 -4.53 29.82 68.60 2.05 -2.49 16 22 C -0.05 0.08 9.76 22.45 0.22 0.30 16 23 C -0.12 -0.28 9.63 22.61 0.22 -0.06 16 24 C -0.15 0.42 7.44 31.18 0.23 0.65 16 25 H 0.13 -0.79 8.14 -2.39 -0.02 -0.81 16 26 H 0.06 0.00 8.13 -2.38 -0.02 -0.02 16 27 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 28 H 0.13 -1.08 8.14 -2.39 -0.02 -1.10 16 29 H 0.12 -0.87 8.14 -2.39 -0.02 -0.89 16 30 H 0.06 -0.06 7.81 -2.38 -0.02 -0.08 16 31 H 0.07 -0.11 8.10 -2.39 -0.02 -0.13 16 32 H 0.09 -0.50 8.07 -2.39 -0.02 -0.52 16 33 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 34 H 0.42 -0.50 8.04 -92.71 -0.75 -1.25 16 35 H 0.19 -1.43 4.89 -2.91 -0.01 -1.45 16 36 H 0.14 -1.01 7.96 -2.39 -0.02 -1.03 16 37 H 0.39 -2.67 8.70 -74.06 -0.64 -3.32 16 38 H -0.28 0.61 7.11 99.48 0.71 1.32 16 39 H -0.30 -0.70 7.11 99.48 0.71 0.00 16 40 H 0.16 -0.73 8.06 -2.91 -0.02 -0.75 16 41 H 0.15 0.38 7.64 -2.91 -0.02 0.36 16 42 H 0.07 -0.15 8.14 -2.38 -0.02 -0.17 16 43 H 0.09 -0.20 7.90 -2.39 -0.02 -0.22 16 Total: 0.00 -22.10 367.11 0.46 -21.64 By element: Atomic # 1 Polarization: -10.92 SS G_CDS: -0.30 Total: -11.22 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 5.01 Total: 13.48 kcal Atomic # 7 Polarization: -1.94 SS G_CDS: -4.13 Total: -6.07 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -2.16 Total: -15.34 kcal Atomic # 14 Polarization: -4.53 SS G_CDS: 2.05 Total: -2.49 kcal Total: -22.10 0.46 -21.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_13287726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.356 kcal (2) G-P(sol) polarization free energy of solvation -22.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds