Wall clock time and date at job start Tue Mar 9 2021 13:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00137 * 2 1 4 4 O 1.20833 * 119.99852 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00432 * 179.71953 * 3 2 1 6 6 C 1.52996 * 109.47298 * 180.27351 * 5 3 2 7 7 C 1.53005 * 109.46952 * 180.02562 * 6 5 3 8 8 H 1.08999 * 112.85221 * 316.19692 * 7 6 5 9 9 C 1.53778 * 113.61376 * 87.50870 * 7 6 5 10 10 C 1.53779 * 87.08464 * 139.98150 * 9 7 6 11 11 H 1.08998 * 113.61636 * 89.11455 * 10 9 7 12 12 N 1.46496 * 113.68856 * 220.01231 * 10 9 7 13 13 C 1.34787 * 119.99624 * 252.53015 * 12 10 9 14 14 O 1.21589 * 119.99879 * 0.02562 * 13 12 10 15 15 C 1.47538 * 119.99611 * 180.02562 * 13 12 10 16 16 C 1.40139 * 120.18692 * 180.02562 * 15 13 12 17 17 O 1.35651 * 120.15284 * 0.02562 * 16 15 13 18 18 C 1.38708 * 119.69746 * 180.02562 * 16 15 13 19 19 C 1.50702 * 119.95516 * 179.97438 * 18 16 15 20 20 O 1.42901 * 109.46983 * 75.00354 * 19 18 16 21 21 Si 1.86305 * 109.47105 * 194.99851 * 19 18 16 22 22 C 1.38053 * 120.08538 * 0.02562 * 18 16 15 23 23 C 1.38547 * 120.39152 * 0.02562 * 22 18 16 24 24 C 1.50699 * 119.84865 * 179.97438 * 23 22 18 25 25 C 1.37789 * 120.29831 * 359.67745 * 23 22 18 26 26 C 1.53780 * 113.61528 * 185.00355 * 7 6 5 27 27 H 1.08997 * 109.47403 * 60.00337 * 1 2 3 28 28 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47380 * 299.99656 * 1 2 3 30 30 H 1.09000 * 109.47190 * 300.28287 * 5 3 2 31 31 H 1.09006 * 109.46468 * 60.27870 * 5 3 2 32 32 H 1.08994 * 109.47515 * 300.00215 * 6 5 3 33 33 H 1.09006 * 109.46938 * 60.00806 * 6 5 3 34 34 H 1.09001 * 113.61187 * 254.53373 * 9 7 6 35 35 H 1.09003 * 113.61242 * 25.42557 * 9 7 6 36 36 H 0.96999 * 120.00899 * 72.53422 * 12 10 9 37 37 H 0.96699 * 114.00025 * 89.99386 * 17 16 15 38 38 H 1.08995 * 109.47558 * 315.00487 * 19 18 16 39 39 H 0.96692 * 114.00566 * 60.00014 * 20 19 18 40 40 H 1.48503 * 109.99621 * 58.68299 * 21 19 18 41 41 H 1.48498 * 110.00072 * 179.97438 * 21 19 18 42 42 H 1.08005 * 119.80179 * 179.97438 * 22 18 16 43 43 H 1.08996 * 109.46665 * 90.00471 * 24 23 22 44 44 H 1.09003 * 109.46894 * 209.99755 * 24 23 22 45 45 H 1.08997 * 109.47241 * 330.00070 * 24 23 22 46 46 H 1.07998 * 120.04862 * 180.32027 * 25 23 22 47 47 H 1.09003 * 113.61128 * 334.56982 * 26 7 6 48 48 H 1.09000 * 113.61676 * 105.38254 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0064 6 6 4.0000 2.7420 0.0119 7 6 5.5280 2.8221 0.0177 8 1 5.9861 2.1185 0.7128 9 6 6.1515 2.7970 -1.3877 10 6 7.1417 3.8592 -0.8819 11 1 8.0420 3.4388 -0.4338 12 7 7.4309 4.9086 -1.8624 13 6 8.6287 4.9425 -2.4796 14 8 9.4688 4.1019 -2.2229 15 6 8.9201 5.9996 -3.4666 16 6 10.1639 6.0383 -4.1111 17 8 11.1060 5.1034 -3.8308 18 6 10.4274 7.0371 -5.0370 19 6 11.7632 7.0846 -5.7330 20 8 11.8191 6.0593 -6.7269 21 14 11.9822 8.7477 -6.5436 22 6 9.4678 7.9882 -5.3208 23 6 8.2373 7.9539 -4.6850 24 6 7.1991 8.9986 -5.0037 25 6 7.9564 6.9654 -3.7671 26 6 6.0692 4.2557 0.1465 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.9524 0.7784 0.8966 31 1 3.9596 0.7831 -0.8834 32 1 3.6139 3.2385 -0.8783 33 1 3.6067 3.2338 0.9017 34 1 6.6218 1.8465 -1.6398 35 1 5.4829 3.1597 -2.1685 36 1 6.7606 5.5790 -2.0674 37 1 11.0611 4.3187 -4.3940 38 1 12.5584 6.9279 -5.0043 39 1 11.1387 6.1357 -7.4097 40 1 11.8942 9.8246 -5.5249 41 1 13.2961 8.8075 -7.2331 42 1 9.6780 8.7640 -6.0422 43 1 6.5780 8.6532 -5.8301 44 1 6.5746 9.1696 -4.1268 45 1 7.6935 9.9285 -5.2846 46 1 6.9941 6.9396 -3.2777 47 1 5.3782 5.0174 -0.2149 48 1 6.4717 4.4836 1.1335 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475074_13422088.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:25:54 Heat of formation + Delta-G solvation = -153.786415 kcal Electronic energy + Delta-G solvation = -30332.952556 eV Core-core repulsion = 25934.281110 eV Total energy + Delta-G solvation = -4398.671446 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.165 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.84498 -41.52277 -40.67169 -39.29876 -38.05208 -37.66119 -37.59278 -35.23589 -33.65424 -33.03549 -32.35161 -29.10022 -27.53737 -27.03136 -26.75000 -26.62656 -25.19045 -23.01006 -22.01226 -21.64077 -21.40965 -20.55396 -19.59888 -18.63490 -18.35653 -17.92892 -17.68395 -17.52110 -17.40966 -16.89329 -16.70125 -16.21537 -16.12341 -15.96858 -15.57302 -15.31839 -15.08078 -14.83205 -14.53888 -14.38633 -14.24814 -14.12172 -13.85164 -13.62938 -13.40092 -13.35497 -13.27329 -13.02899 -12.87376 -12.70683 -12.54933 -12.28503 -12.18754 -12.11733 -11.90580 -11.82003 -11.75572 -11.67532 -11.38945 -11.18981 -10.93628 -10.43353 -10.24060 -9.97214 -9.50110 -5.06684 -0.35349 0.05783 1.15530 1.24028 1.62288 1.70043 1.77768 1.94500 2.10688 2.54265 3.18032 3.41164 3.49861 3.52659 3.55764 3.60864 3.73952 3.78874 3.85223 3.86640 4.12419 4.15883 4.18395 4.25141 4.26030 4.30684 4.35910 4.51559 4.54707 4.60736 4.64758 4.69157 4.70456 4.78095 4.82338 4.87934 4.92958 4.94007 4.98236 5.06488 5.10793 5.18128 5.24079 5.27397 5.34902 5.42667 5.42970 5.61282 5.68953 6.46582 6.68161 6.69434 6.74987 7.15263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.456 3.544 4 O -0.544 6.544 5 C -0.110 4.110 6 C -0.090 4.090 7 C -0.097 4.097 8 H 0.107 0.893 9 C -0.144 4.144 10 C 0.112 3.888 11 H 0.093 0.907 12 N -0.704 5.704 13 C 0.554 3.446 14 O -0.567 6.567 15 C -0.183 4.183 16 C 0.159 3.841 17 O -0.496 6.496 18 C -0.160 4.160 19 C -0.075 4.075 20 O -0.553 6.553 21 Si 0.795 3.205 22 C -0.070 4.070 23 C -0.093 4.093 24 C -0.118 4.118 25 C -0.063 4.063 26 C -0.133 4.133 27 H 0.060 0.940 28 H 0.127 0.873 29 H 0.060 0.940 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.413 0.587 37 H 0.403 0.597 38 H 0.091 0.909 39 H 0.395 0.605 40 H -0.284 1.284 41 H -0.299 1.299 42 H 0.165 0.835 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.158 0.842 47 H 0.100 0.900 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.435 2.442 -3.533 8.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C 0.301 3.699 4 O -0.434 6.434 5 C -0.148 4.148 6 C -0.128 4.128 7 C -0.115 4.115 8 H 0.125 0.875 9 C -0.182 4.182 10 C 0.007 3.993 11 H 0.111 0.889 12 N -0.355 5.355 13 C 0.343 3.657 14 O -0.447 6.447 15 C -0.186 4.186 16 C 0.113 3.887 17 O -0.308 6.308 18 C -0.161 4.161 19 C -0.183 4.183 20 O -0.361 6.361 21 Si 0.700 3.300 22 C -0.088 4.088 23 C -0.093 4.093 24 C -0.174 4.174 25 C -0.081 4.081 26 C -0.171 4.171 27 H 0.079 0.921 28 H 0.145 0.855 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.251 0.749 37 H 0.262 0.738 38 H 0.109 0.891 39 H 0.245 0.755 40 H -0.211 1.211 41 H -0.227 1.227 42 H 0.182 0.818 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.176 0.824 47 H 0.118 0.882 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.942 3.021 -2.581 7.148 hybrid contribution -0.134 -0.741 0.376 0.842 sum -6.076 2.279 -2.206 6.854 Atomic orbital electron populations 1.23489 0.75224 1.05478 1.02359 1.86517 1.24710 1.33598 1.83740 1.24574 0.93561 0.80809 0.70947 1.90670 1.68367 1.37378 1.46995 1.21563 0.84887 1.00573 1.07738 1.21315 0.94329 0.93776 1.03332 1.22308 0.94178 0.97602 0.97445 0.87456 1.23562 0.97861 0.99192 0.97613 1.22576 0.97515 0.89097 0.90070 0.88895 1.45831 1.15435 1.32004 1.42274 1.18392 0.82177 0.84227 0.80944 1.90799 1.47592 1.41204 1.65069 1.20456 0.95775 0.99888 1.02517 1.18592 0.86606 0.90893 0.92621 1.84649 1.52264 1.31618 1.62272 1.20760 0.98379 0.97858 0.99087 1.25233 0.95024 1.04760 0.93327 1.86496 1.58621 1.51480 1.39538 0.94027 0.83082 0.71120 0.81804 1.21315 0.92109 0.96854 0.98480 1.20157 0.95887 0.97257 0.96040 1.20933 0.96632 0.96227 1.03590 1.21432 0.98363 0.92010 0.96310 1.23390 0.96735 0.97762 0.99196 0.92110 0.85519 0.92130 0.85584 0.85933 0.91361 0.91341 0.91289 0.88898 0.74907 0.73820 0.89115 0.75455 1.21129 1.22733 0.81827 0.89157 0.90224 0.89914 0.82417 0.88166 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.37 -0.85 10.56 -51.34 -0.54 -1.39 16 3 C 0.46 1.20 7.96 71.23 0.57 1.77 16 4 O -0.54 -4.94 15.73 21.94 0.35 -4.59 16 5 C -0.11 0.54 5.80 29.85 0.17 0.71 16 6 C -0.09 0.40 4.34 30.59 0.13 0.54 16 7 C -0.10 0.58 3.65 -10.27 -0.04 0.54 16 8 H 0.11 -0.77 8.13 -2.39 -0.02 -0.79 16 9 C -0.14 0.53 7.43 31.12 0.23 0.76 16 10 C 0.11 -0.07 4.24 45.52 0.19 0.13 16 11 H 0.09 0.43 7.46 -2.39 -0.02 0.42 16 12 N -0.70 0.12 5.31 -443.20 -2.35 -2.23 16 13 C 0.55 4.16 7.76 86.69 0.67 4.83 16 14 O -0.57 -9.23 14.76 16.92 0.25 -8.98 16 15 C -0.18 -0.79 5.89 -20.01 -0.12 -0.91 16 16 C 0.16 1.11 6.69 22.84 0.15 1.27 16 17 O -0.50 -5.62 10.91 -68.74 -0.75 -6.37 16 18 C -0.16 -0.29 5.27 -19.80 -0.10 -0.39 16 19 C -0.07 -0.14 2.38 71.24 0.17 0.03 16 20 O -0.55 -0.71 12.88 -148.98 -1.92 -2.63 16 21 Si 0.80 -1.86 29.91 68.60 2.05 0.20 16 22 C -0.07 0.28 8.30 22.30 0.19 0.46 16 23 C -0.09 0.48 5.87 -19.90 -0.12 0.37 16 24 C -0.12 1.26 10.00 71.24 0.71 1.97 16 25 C -0.06 0.20 9.18 22.52 0.21 0.41 16 26 C -0.13 0.69 7.39 31.12 0.23 0.92 16 27 H 0.06 -0.05 8.13 -2.39 -0.02 -0.06 16 28 H 0.13 -0.85 8.14 -2.38 -0.02 -0.86 16 29 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 30 H 0.13 -1.05 8.14 -2.39 -0.02 -1.07 16 31 H 0.12 -0.94 8.14 -2.38 -0.02 -0.96 16 32 H 0.07 -0.19 7.80 -2.39 -0.02 -0.21 16 33 H 0.07 -0.16 8.10 -2.38 -0.02 -0.18 16 34 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.09 -0.44 7.89 -2.39 -0.02 -0.45 16 36 H 0.41 -2.70 6.76 -92.71 -0.63 -3.32 16 37 H 0.40 2.58 9.06 -74.06 -0.67 1.90 16 38 H 0.09 0.64 7.83 -2.39 -0.02 0.62 16 39 H 0.40 -3.22 8.70 -74.06 -0.64 -3.87 16 40 H -0.28 -0.71 7.11 99.48 0.71 0.00 16 41 H -0.30 -1.65 7.11 99.48 0.71 -0.95 16 42 H 0.16 -1.68 5.10 -2.91 -0.01 -1.69 16 43 H 0.09 -1.13 8.14 -2.39 -0.02 -1.15 16 44 H 0.08 -0.94 8.08 -2.39 -0.02 -0.96 16 45 H 0.08 -0.99 8.08 -2.39 -0.02 -1.01 16 46 H 0.16 -1.52 6.40 -2.91 -0.02 -1.54 16 47 H 0.10 -0.74 8.08 -2.39 -0.02 -0.76 16 48 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 Total: 0.00 -29.61 399.58 0.64 -28.97 By element: Atomic # 1 Polarization: -16.64 SS G_CDS: -0.89 Total: -17.52 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 4.45 Total: 14.55 kcal Atomic # 7 Polarization: 0.12 SS G_CDS: -2.35 Total: -2.23 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -2.62 Total: -23.97 kcal Atomic # 14 Polarization: -1.86 SS G_CDS: 2.05 Total: 0.20 kcal Total: -29.61 0.64 -28.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_13422088.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.816 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds