Wall clock time and date at job start Tue Mar 9 2021 13:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34228 * 117.00246 * 2 1 4 4 O 1.20830 * 119.99719 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00343 * 180.02562 * 3 2 1 6 6 C 1.52992 * 109.47236 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47296 * 179.97438 * 6 5 3 8 8 H 1.09006 * 112.84493 * 43.80824 * 7 6 5 9 9 C 1.53778 * 113.61867 * 174.99773 * 7 6 5 10 10 C 1.53783 * 87.08121 * 139.98637 * 9 7 6 11 11 H 1.08994 * 113.61286 * 89.20331 * 10 9 7 12 12 N 1.46507 * 113.61245 * 220.02296 * 10 9 7 13 13 C 1.34775 * 119.99612 * 204.99818 * 12 10 9 14 14 O 1.21282 * 120.00249 * 359.97438 * 13 12 10 15 15 C 1.50697 * 119.99664 * 179.97438 * 13 12 10 16 16 O 1.42902 * 109.47005 * 180.02562 * 15 13 12 17 17 C 1.35903 * 116.99881 * 180.02562 * 16 15 13 18 18 C 1.38713 * 120.05329 * 180.02562 * 17 16 15 19 19 N 1.48006 * 120.03225 * 359.97438 * 18 17 16 20 20 O 1.21796 * 120.00240 * 180.02562 * 19 18 17 21 21 O 1.21807 * 119.99352 * 0.03080 * 19 18 17 22 22 C 1.38166 * 119.94534 * 180.02562 * 18 17 16 23 23 C 1.38248 * 120.05495 * 359.97438 * 22 18 17 24 24 C 1.50699 * 119.94669 * 179.97438 * 23 22 18 25 25 O 1.42907 * 109.46603 * 65.00093 * 24 23 22 26 26 Si 1.86298 * 109.47032 * 184.99397 * 24 23 22 27 27 C 1.38288 * 120.10993 * 0.27060 * 23 22 18 28 28 C 1.38128 * 120.05684 * 359.45324 * 27 23 22 29 29 C 1.53779 * 87.08090 * 334.56778 * 10 9 7 30 30 H 1.09002 * 109.47144 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46870 * 300.00285 * 1 2 3 32 32 H 1.09000 * 109.46917 * 60.00429 * 1 2 3 33 33 H 1.08997 * 109.47318 * 59.99346 * 5 3 2 34 34 H 1.09003 * 109.46821 * 299.99644 * 5 3 2 35 35 H 1.09006 * 109.47169 * 59.99906 * 6 5 3 36 36 H 1.09003 * 109.47362 * 299.99848 * 6 5 3 37 37 H 1.09006 * 113.61039 * 25.43733 * 9 7 6 38 38 H 1.09001 * 113.61862 * 254.53309 * 9 7 6 39 39 H 0.97003 * 120.00052 * 25.00045 * 12 10 9 40 40 H 1.09007 * 109.47083 * 60.00407 * 15 13 12 41 41 H 1.08997 * 109.47976 * 299.99973 * 15 13 12 42 42 H 1.08001 * 119.97718 * 180.02562 * 22 18 17 43 43 H 1.08996 * 109.47117 * 305.00006 * 24 23 22 44 44 H 0.96697 * 114.00527 * 59.99993 * 25 24 23 45 45 H 1.48506 * 109.99834 * 58.68765 * 26 24 23 46 46 H 1.48502 * 110.00011 * 180.02562 * 26 24 23 47 47 H 1.07997 * 119.97469 * 179.70984 * 27 23 22 48 48 H 1.08000 * 120.02842 * 180.29335 * 28 27 23 49 49 H 1.09004 * 113.61020 * 139.97568 * 29 10 9 50 50 H 1.08995 * 113.62129 * 270.88450 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 6 5.5280 2.8221 -0.0011 8 1 5.9886 2.1200 -0.6962 9 6 6.0698 4.2560 -0.1244 10 6 7.1385 3.8569 0.9069 11 1 8.0409 3.4389 0.4610 12 7 7.4229 4.9033 1.8922 13 6 8.6180 4.9361 2.5143 14 8 9.4579 4.0993 2.2588 15 6 8.9107 6.0127 3.5273 16 8 10.2319 5.8357 4.0423 17 6 10.6558 6.7295 4.9741 18 6 11.9277 6.6174 5.5162 19 7 12.8247 5.5237 5.0808 20 8 13.9412 5.4255 5.5575 21 8 12.4463 4.7218 4.2456 22 6 12.3561 7.5270 6.4638 23 6 11.5186 8.5486 6.8714 24 6 11.9882 9.5391 7.9055 25 8 13.0785 10.2975 7.3780 26 14 10.5889 10.6873 8.3461 27 6 10.2483 8.6595 6.3362 28 6 9.8173 7.7561 5.3844 29 6 6.1465 2.7935 1.4066 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.9558 0.7808 -0.8907 34 1 3.9564 0.7806 0.8892 35 1 3.6107 3.2363 0.8889 36 1 3.6101 3.2359 -0.8911 37 1 5.3775 5.0168 0.2363 38 1 6.4774 4.4856 -1.1089 39 1 6.7509 5.5723 2.0968 40 1 8.1907 5.9492 4.3433 41 1 8.8348 6.9902 3.0511 42 1 13.3464 7.4405 6.8859 43 1 12.3149 9.0053 8.7979 44 1 12.8594 10.7994 6.5810 45 1 9.4368 9.9078 8.8662 46 1 11.0393 11.6695 9.3648 47 1 9.5941 9.4557 6.6596 48 1 8.8269 7.8459 4.9632 49 1 6.6159 1.8424 1.6580 50 1 5.4752 3.1544 2.1858 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475074_4549638.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:27:35 Heat of formation + Delta-G solvation = -136.553659 kcal Electronic energy + Delta-G solvation = -35714.434003 eV Core-core repulsion = 30485.493390 eV Total energy + Delta-G solvation = -5228.940613 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.160 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.29602 -41.80787 -41.54335 -41.02786 -39.88412 -39.07907 -37.62774 -37.59681 -37.35759 -35.22796 -33.55642 -33.30494 -32.24689 -30.03909 -28.96325 -27.81678 -26.88676 -26.62207 -26.36144 -24.28194 -23.24625 -22.73210 -21.78818 -21.43834 -20.63334 -20.47741 -19.77663 -19.16976 -18.64220 -18.60930 -18.38985 -18.08718 -17.68333 -17.56784 -17.51487 -17.30145 -16.86159 -16.34847 -16.26622 -16.03634 -15.78315 -15.59287 -15.28275 -15.15742 -14.70051 -14.54904 -14.17059 -14.03987 -13.92613 -13.80981 -13.74793 -13.35722 -13.32478 -13.21329 -13.02294 -12.71074 -12.68828 -12.37897 -12.28963 -12.26336 -12.24133 -12.19699 -11.97819 -11.89048 -11.81247 -11.68151 -11.37220 -11.16801 -10.92349 -10.83359 -10.55585 -10.06783 -9.80259 -5.00572 -1.31673 -0.24555 0.15469 0.35170 1.15875 1.23062 1.27586 1.46685 1.65142 1.78994 2.02657 2.04726 2.37812 3.11862 3.25723 3.39585 3.52030 3.54305 3.55653 3.63807 3.71279 3.75578 3.79028 3.86189 3.88471 3.93860 4.04184 4.18068 4.25434 4.26788 4.28120 4.31542 4.35326 4.51196 4.54535 4.63397 4.66631 4.70527 4.71315 4.82339 4.83977 4.91359 4.96927 5.07418 5.10072 5.12835 5.19077 5.26238 5.35796 5.43662 5.62949 5.77209 6.41484 6.49043 6.69699 6.74143 7.18695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.370 6.370 3 C 0.456 3.544 4 O -0.543 6.543 5 C -0.112 4.112 6 C -0.089 4.089 7 C -0.101 4.101 8 H 0.104 0.896 9 C -0.129 4.129 10 C 0.114 3.886 11 H 0.091 0.909 12 N -0.698 5.698 13 C 0.507 3.493 14 O -0.568 6.568 15 C 0.024 3.976 16 O -0.292 6.292 17 C 0.194 3.806 18 C -0.105 4.105 19 N 0.035 4.965 20 O -0.204 6.204 21 O -0.173 6.173 22 C -0.004 4.004 23 C -0.151 4.151 24 C -0.082 4.082 25 O -0.558 6.558 26 Si 0.800 3.200 27 C -0.003 4.003 28 C -0.188 4.188 29 C -0.146 4.146 30 H 0.126 0.874 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.422 0.578 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.149 0.851 43 H 0.108 0.892 44 H 0.398 0.602 45 H -0.267 1.267 46 H -0.306 1.306 47 H 0.191 0.809 48 H 0.207 0.793 49 H 0.063 0.937 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.769 7.994 -0.791 14.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C 0.301 3.699 4 O -0.434 6.434 5 C -0.149 4.149 6 C -0.127 4.127 7 C -0.119 4.119 8 H 0.122 0.878 9 C -0.167 4.167 10 C 0.009 3.991 11 H 0.109 0.891 12 N -0.352 5.352 13 C 0.293 3.707 14 O -0.445 6.445 15 C -0.053 4.053 16 O -0.202 6.202 17 C 0.144 3.856 18 C -0.191 4.191 19 N 0.544 4.456 20 O -0.411 6.411 21 O -0.387 6.387 22 C -0.023 4.023 23 C -0.152 4.152 24 C -0.190 4.190 25 O -0.366 6.366 26 Si 0.703 3.297 27 C -0.020 4.020 28 C -0.207 4.207 29 C -0.185 4.185 30 H 0.144 0.856 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.123 0.877 38 H 0.097 0.903 39 H 0.261 0.739 40 H 0.160 0.840 41 H 0.164 0.836 42 H 0.167 0.833 43 H 0.126 0.874 44 H 0.248 0.752 45 H -0.193 1.193 46 H -0.234 1.234 47 H 0.207 0.793 48 H 0.224 0.776 49 H 0.082 0.918 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.892 8.018 0.254 14.345 hybrid contribution 0.648 -1.040 0.149 1.234 sum -11.244 6.978 0.403 13.239 Atomic orbital electron populations 1.23488 0.75230 1.05450 1.02374 1.86521 1.24712 1.33676 1.83745 1.24585 0.93575 0.80792 0.70943 1.90667 1.68361 1.37335 1.46991 1.21575 0.84849 1.00804 1.07641 1.21315 0.94398 0.93568 1.03399 1.22322 0.94133 0.97998 0.97494 0.87825 1.23373 0.96652 0.97475 0.99152 1.22536 0.97439 0.89112 0.89974 0.89102 1.45677 1.15324 1.32433 1.41756 1.20556 0.82434 0.85666 0.82063 1.90844 1.47694 1.41361 1.64649 1.23153 0.82853 1.00574 0.98748 1.86476 1.33480 1.48448 1.51784 1.18981 0.90116 0.89373 0.87125 1.20872 0.91573 0.96546 1.10080 1.43903 1.01129 1.01612 0.98908 1.94502 1.07154 1.80546 1.58925 1.94679 1.79525 1.37952 1.26562 1.20851 1.01191 0.89811 0.90479 1.20457 0.95100 0.97735 1.01946 1.25472 1.00519 0.96761 0.96269 1.86535 1.36794 1.64364 1.48895 0.93855 0.73594 0.77053 0.85188 1.21720 0.93521 0.96535 0.90235 1.21828 1.02445 0.94350 1.02049 1.23587 0.98027 0.99247 0.97654 0.85597 0.92090 0.92095 0.85729 0.86039 0.91191 0.91320 0.87662 0.90275 0.73935 0.83996 0.83644 0.83333 0.87434 0.75160 1.19282 1.23383 0.79259 0.77584 0.91782 0.88524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.37 -0.68 10.57 -51.39 -0.54 -1.23 16 3 C 0.46 0.86 7.96 71.23 0.57 1.43 16 4 O -0.54 -4.40 15.73 21.95 0.35 -4.06 16 5 C -0.11 0.64 5.80 29.84 0.17 0.81 16 6 C -0.09 0.54 4.34 30.59 0.13 0.67 16 7 C -0.10 0.79 3.65 -10.27 -0.04 0.75 16 8 H 0.10 -0.86 8.13 -2.38 -0.02 -0.88 16 9 C -0.13 1.10 7.39 31.12 0.23 1.33 16 10 C 0.11 -0.48 4.24 45.52 0.19 -0.29 16 11 H 0.09 0.19 7.46 -2.39 -0.02 0.17 16 12 N -0.70 4.92 5.35 -440.03 -2.36 2.56 16 13 C 0.51 0.23 7.91 87.66 0.69 0.92 16 14 O -0.57 -8.20 16.10 16.00 0.26 -7.94 16 15 C 0.02 -0.19 5.22 71.24 0.37 0.19 16 16 O -0.29 -1.20 7.68 -63.43 -0.49 -1.69 16 17 C 0.19 0.04 6.67 22.51 0.15 0.19 16 18 C -0.11 -0.73 6.87 36.47 0.25 -0.48 16 19 N 0.03 0.58 4.45 -46.24 -0.21 0.38 16 20 O -0.20 -3.86 18.45 18.89 0.35 -3.51 16 21 O -0.17 -3.76 17.24 25.60 0.44 -3.32 16 22 C 0.00 -0.01 9.19 22.25 0.20 0.20 16 23 C -0.15 0.88 5.35 -19.85 -0.11 0.77 16 24 C -0.08 0.51 2.80 71.24 0.20 0.71 16 25 O -0.56 2.05 12.83 -148.98 -1.91 0.14 16 26 Si 0.80 -8.20 29.80 68.60 2.04 -6.16 16 27 C 0.00 0.04 8.66 22.26 0.19 0.23 16 28 C -0.19 2.14 9.04 22.37 0.20 2.35 16 29 C -0.15 0.86 7.43 31.12 0.23 1.10 16 30 H 0.13 -0.88 8.14 -2.39 -0.02 -0.90 16 31 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 32 H 0.06 -0.07 8.13 -2.39 -0.02 -0.09 16 33 H 0.12 -1.10 8.14 -2.39 -0.02 -1.12 16 34 H 0.12 -1.01 8.14 -2.39 -0.02 -1.03 16 35 H 0.07 -0.34 7.80 -2.38 -0.02 -0.36 16 36 H 0.07 -0.27 8.10 -2.39 -0.02 -0.29 16 37 H 0.11 -1.21 8.08 -2.38 -0.02 -1.23 16 38 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H 0.42 -6.54 8.73 -92.71 -0.81 -7.35 16 40 H 0.14 -2.33 7.66 -2.38 -0.02 -2.35 16 41 H 0.15 -2.46 7.66 -2.39 -0.02 -2.48 16 42 H 0.15 0.60 7.61 -2.91 -0.02 0.58 16 43 H 0.11 -0.43 7.96 -2.39 -0.02 -0.45 16 44 H 0.40 -5.02 8.70 -74.06 -0.64 -5.66 16 45 H -0.27 2.06 7.11 99.48 0.71 2.76 16 46 H -0.31 0.13 7.11 99.48 0.71 0.84 16 47 H 0.19 -3.86 4.90 -2.91 -0.01 -3.87 16 48 H 0.21 -4.46 6.30 -2.91 -0.02 -4.48 16 49 H 0.06 -0.19 8.14 -2.38 -0.02 -0.21 16 50 H 0.10 -0.74 7.89 -2.39 -0.02 -0.76 16 Total: 0.00 -45.08 429.45 2.38 -42.70 By element: Atomic # 1 Polarization: -29.49 SS G_CDS: -0.40 Total: -29.88 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 4.84 Total: 12.01 kcal Atomic # 7 Polarization: 5.50 SS G_CDS: -2.56 Total: 2.94 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -1.55 Total: -21.61 kcal Atomic # 14 Polarization: -8.20 SS G_CDS: 2.04 Total: -6.16 kcal Total: -45.08 2.38 -42.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_4549638.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.851 kcal (2) G-P(sol) polarization free energy of solvation -45.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds