Wall clock time and date at job start Tue Mar 9 2021 13:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34232 * 116.99878 * 2 1 4 4 O 1.20825 * 120.00049 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99727 * 180.02562 * 3 2 1 6 6 C 1.53009 * 109.47097 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47123 * 179.97438 * 6 5 3 8 8 H 1.09002 * 112.84583 * 43.80607 * 7 6 5 9 9 C 1.53782 * 113.61127 * 174.99960 * 7 6 5 10 10 C 1.53779 * 87.07946 * 139.98481 * 9 7 6 11 11 H 1.08998 * 113.61522 * 89.20162 * 10 9 7 12 12 N 1.46505 * 113.61212 * 220.01672 * 10 9 7 13 13 C 1.34773 * 119.99741 * 204.99862 * 12 10 9 14 14 O 1.21279 * 120.00626 * 0.02562 * 13 12 10 15 15 C 1.50701 * 119.99766 * 180.02562 * 13 12 10 16 16 O 1.42904 * 109.47088 * 179.97438 * 15 13 12 17 17 C 1.35899 * 116.99632 * 180.02562 * 16 15 13 18 18 C 1.38753 * 120.02345 * 179.73208 * 17 16 15 19 19 C 1.50705 * 119.97232 * 359.96896 * 18 17 16 20 20 O 1.42891 * 109.46937 * 75.00456 * 19 18 17 21 21 Si 1.86308 * 109.46861 * 195.00396 * 19 18 17 22 22 C 1.38198 * 120.05107 * 179.71728 * 18 17 16 23 23 C 1.38149 * 120.11195 * 0.54769 * 22 18 17 24 24 C 1.38796 * 120.05578 * 359.72688 * 23 22 18 25 25 O 1.35894 * 120.03050 * 180.02562 * 24 23 22 26 26 C 1.42898 * 117.00054 * 359.97064 * 25 24 23 27 27 C 1.38617 * 119.94129 * 359.97438 * 24 23 22 28 28 C 1.53779 * 113.61431 * 272.49617 * 7 6 5 29 29 H 1.09001 * 109.47157 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47122 * 299.99817 * 1 2 3 31 31 H 1.09000 * 109.47070 * 59.99842 * 1 2 3 32 32 H 1.09003 * 109.47178 * 299.99681 * 5 3 2 33 33 H 1.09001 * 109.47646 * 60.00176 * 5 3 2 34 34 H 1.08995 * 109.46886 * 300.00093 * 6 5 3 35 35 H 1.09001 * 109.46838 * 59.99548 * 6 5 3 36 36 H 1.09007 * 113.61104 * 254.53147 * 9 7 6 37 37 H 1.08996 * 113.61817 * 25.35007 * 9 7 6 38 38 H 0.96997 * 119.99922 * 25.00313 * 12 10 9 39 39 H 1.08992 * 109.47363 * 300.00326 * 15 13 12 40 40 H 1.09008 * 109.47008 * 60.00453 * 15 13 12 41 41 H 1.08992 * 109.47088 * 315.00335 * 19 18 17 42 42 H 0.96702 * 114.00532 * 59.99636 * 20 19 18 43 43 H 1.48501 * 109.99974 * 58.67849 * 21 19 18 44 44 H 1.48496 * 109.99844 * 180.02562 * 21 19 18 45 45 H 1.08005 * 119.94392 * 180.27275 * 22 18 17 46 46 H 1.08000 * 119.97886 * 179.69980 * 23 22 18 47 47 H 1.08993 * 109.47592 * 300.00854 * 26 25 24 48 48 H 1.09004 * 109.46342 * 60.00532 * 26 25 24 49 49 H 1.08997 * 109.47116 * 179.97438 * 26 25 24 50 50 H 1.08004 * 120.05537 * 179.97438 * 27 24 23 51 51 H 1.08995 * 113.61396 * 334.56702 * 28 7 6 52 52 H 1.09002 * 113.61261 * 105.47440 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0002 2.7421 0.0002 7 6 5.5281 2.8222 0.0002 8 1 5.9886 2.1207 -0.6955 9 6 6.0697 4.2563 -0.1218 10 6 7.1384 3.8563 0.9090 11 1 8.0409 3.4387 0.4627 12 7 7.4229 4.9018 1.8952 13 6 8.6180 4.9342 2.5172 14 8 9.4582 4.0982 2.2604 15 6 8.9103 6.0092 3.5320 16 8 10.2312 5.8312 4.0475 17 6 10.6547 6.7236 4.9809 18 6 11.9245 6.6063 5.5278 19 6 12.8338 5.4883 5.0868 20 8 13.3506 5.7794 3.7869 21 14 14.2440 5.3226 6.2931 22 6 12.3578 7.5169 6.4727 23 6 11.5243 8.5392 6.8834 24 6 10.2512 8.6575 6.3436 25 8 9.4319 9.6636 6.7476 26 6 9.9458 10.5631 7.7318 27 6 9.8164 7.7490 5.3911 28 6 6.1464 2.7924 1.4079 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.9564 0.7806 0.8892 33 1 3.9558 0.7810 -0.8908 34 1 3.6101 3.2368 -0.8893 35 1 3.6108 3.2357 0.8906 36 1 6.4772 4.4867 -1.1062 37 1 5.3769 5.0169 0.2381 38 1 6.7510 5.5706 2.1004 39 1 8.8340 6.9874 3.0574 40 1 8.1905 5.9441 4.3480 41 1 12.2723 4.5548 5.0539 42 1 13.8627 6.5985 3.7414 43 1 13.7181 5.0514 7.6551 44 1 15.1484 4.2238 5.8691 45 1 13.3482 7.4266 6.8940 46 1 11.8634 9.2468 7.6256 47 1 10.1961 10.0082 8.6359 48 1 10.8407 11.0513 7.3457 49 1 9.1930 11.3164 7.9640 50 1 8.8259 7.8391 4.9701 51 1 5.4751 3.1527 2.1874 52 1 6.6159 1.8411 1.6585 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475074_4974312.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:28:01 Heat of formation + Delta-G solvation = -175.678347 kcal Electronic energy + Delta-G solvation = -33985.018208 eV Core-core repulsion = 29111.177645 eV Total energy + Delta-G solvation = -4873.840562 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.181 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.87417 -41.58001 -41.15472 -40.15092 -39.40554 -38.25778 -37.64635 -36.92082 -35.27974 -33.44114 -32.28535 -31.42269 -29.72881 -28.93157 -28.34781 -26.81461 -26.54430 -26.11700 -24.08044 -22.98408 -22.49099 -21.79541 -21.47490 -20.61065 -19.94721 -18.64038 -18.55346 -18.02626 -17.88864 -17.70507 -17.56326 -17.52229 -17.19155 -16.95610 -16.67405 -16.50896 -16.24049 -15.96814 -15.66004 -15.51514 -15.21792 -15.13713 -14.67427 -14.52634 -14.46201 -14.15904 -13.89737 -13.83779 -13.56215 -13.41571 -13.33416 -13.32539 -13.16665 -13.05201 -12.72913 -12.49215 -12.30940 -12.26923 -12.02794 -11.92405 -11.86908 -11.83763 -11.71628 -11.63001 -11.41297 -11.21570 -10.97804 -10.35682 -10.13639 -9.70810 -9.10645 -5.03671 0.20177 0.29595 1.13616 1.31636 1.37750 1.44358 1.64850 1.76894 1.98529 2.25111 2.56344 2.58712 3.46310 3.50436 3.53571 3.60326 3.72117 3.73232 3.81161 3.82905 3.84041 3.91847 4.01085 4.07933 4.14159 4.16004 4.23289 4.24412 4.28896 4.34222 4.39135 4.43694 4.46067 4.51194 4.61092 4.63040 4.66547 4.68610 4.77074 4.79776 4.86110 4.92676 5.01775 5.04838 5.07298 5.22072 5.23076 5.27388 5.31529 5.40157 5.47304 5.58671 6.11769 6.35608 6.42762 6.67509 6.86341 7.08202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.456 3.544 4 O -0.544 6.544 5 C -0.111 4.111 6 C -0.090 4.090 7 C -0.098 4.098 8 H 0.107 0.893 9 C -0.130 4.130 10 C 0.113 3.887 11 H 0.094 0.906 12 N -0.700 5.700 13 C 0.514 3.486 14 O -0.570 6.570 15 C 0.034 3.966 16 O -0.305 6.305 17 C 0.173 3.827 18 C -0.203 4.203 19 C -0.069 4.069 20 O -0.558 6.558 21 Si 0.795 3.205 22 C -0.031 4.031 23 C -0.237 4.237 24 C 0.163 3.837 25 O -0.331 6.331 26 C 0.015 3.985 27 C -0.255 4.255 28 C -0.146 4.146 29 H 0.127 0.873 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.420 0.580 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.080 0.920 42 H 0.391 0.609 43 H -0.280 1.280 44 H -0.303 1.303 45 H 0.167 0.833 46 H 0.162 0.838 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.115 0.885 50 H 0.151 0.849 51 H 0.093 0.907 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.716 5.681 2.721 6.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C 0.301 3.699 4 O -0.434 6.434 5 C -0.148 4.148 6 C -0.128 4.128 7 C -0.116 4.116 8 H 0.126 0.874 9 C -0.168 4.168 10 C 0.008 3.992 11 H 0.112 0.888 12 N -0.353 5.353 13 C 0.300 3.700 14 O -0.449 6.449 15 C -0.044 4.044 16 O -0.217 6.217 17 C 0.126 3.874 18 C -0.205 4.205 19 C -0.177 4.177 20 O -0.365 6.365 21 Si 0.700 3.300 22 C -0.048 4.048 23 C -0.256 4.256 24 C 0.117 3.883 25 O -0.245 6.245 26 C -0.079 4.079 27 C -0.274 4.274 28 C -0.185 4.185 29 H 0.145 0.855 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.258 0.742 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.098 0.902 42 H 0.240 0.760 43 H -0.207 1.207 44 H -0.232 1.232 45 H 0.184 0.816 46 H 0.179 0.821 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.134 0.866 50 H 0.168 0.832 51 H 0.112 0.888 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.363 4.202 2.811 5.236 hybrid contribution -1.402 0.041 -0.117 1.407 sum -2.765 4.243 2.695 5.736 Atomic orbital electron populations 1.23493 0.75217 1.05487 1.02358 1.86520 1.24721 1.33596 1.83745 1.24576 0.93566 0.80809 0.70945 1.90669 1.68369 1.37380 1.46991 1.21569 0.84885 1.00619 1.07722 1.21318 0.94370 0.93739 1.03344 1.22315 0.94170 0.97787 0.97362 0.87438 1.23380 0.96638 0.97629 0.99183 1.22598 0.97593 0.89075 0.89921 0.88821 1.45733 1.15293 1.32529 1.41776 1.20489 0.82366 0.85366 0.81804 1.90767 1.47666 1.41450 1.64974 1.22748 0.84407 0.99409 0.97823 1.86225 1.31812 1.50101 1.53576 1.18640 0.92828 0.87919 0.87978 1.19763 0.94554 1.02485 1.03673 1.25147 1.02827 0.96816 0.92902 1.86540 1.73098 1.47476 1.29412 0.94117 0.76562 0.85758 0.73579 1.20868 0.99739 0.91349 0.92863 1.21453 0.93902 1.03593 1.06633 1.18879 0.89621 0.87524 0.92267 1.86054 1.41987 1.38615 1.57800 1.23415 1.02191 0.92214 0.90031 1.20545 1.02814 0.98577 1.05440 1.23586 0.97967 0.99221 0.97736 0.85501 0.92146 0.92098 0.86022 0.85529 0.91256 0.91429 0.90084 0.88013 0.74243 0.86141 0.86257 0.90230 0.76008 1.20671 1.23164 0.81575 0.82069 0.91308 0.90998 0.86638 0.83154 0.88822 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.37 -1.07 10.57 -51.44 -0.54 -1.61 16 3 C 0.46 1.47 7.96 71.23 0.57 2.04 16 4 O -0.54 -5.26 15.73 21.97 0.35 -4.92 16 5 C -0.11 0.48 5.80 29.85 0.17 0.65 16 6 C -0.09 0.37 4.34 30.60 0.13 0.50 16 7 C -0.10 0.56 3.65 -10.27 -0.04 0.52 16 8 H 0.11 -0.75 8.13 -2.39 -0.02 -0.77 16 9 C -0.13 0.73 7.39 31.12 0.23 0.96 16 10 C 0.11 -0.11 4.24 45.52 0.19 0.08 16 11 H 0.09 0.42 7.46 -2.39 -0.02 0.40 16 12 N -0.70 1.24 5.35 -440.03 -2.36 -1.12 16 13 C 0.51 3.08 7.91 87.66 0.69 3.77 16 14 O -0.57 -10.09 16.10 16.01 0.26 -9.83 16 15 C 0.03 0.04 5.22 71.24 0.37 0.41 16 16 O -0.30 -3.02 8.99 -73.38 -0.66 -3.68 16 17 C 0.17 1.14 6.66 22.49 0.15 1.29 16 18 C -0.20 -0.97 5.27 -19.75 -0.10 -1.08 16 19 C -0.07 -0.46 2.37 71.24 0.17 -0.29 16 20 O -0.56 -4.58 12.88 -148.98 -1.92 -6.50 16 21 Si 0.80 0.71 29.92 68.60 2.05 2.76 16 22 C -0.03 0.03 8.65 22.24 0.19 0.23 16 23 C -0.24 0.38 9.04 22.38 0.20 0.58 16 24 C 0.16 0.30 6.68 22.49 0.15 0.46 16 25 O -0.33 -0.31 10.49 -92.36 -0.97 -1.28 16 26 C 0.02 -0.10 9.81 113.37 1.11 1.01 16 27 C -0.25 -0.77 8.97 22.46 0.20 -0.56 16 28 C -0.15 0.49 7.43 31.12 0.23 0.72 16 29 H 0.13 -0.78 8.14 -2.39 -0.02 -0.80 16 30 H 0.06 -0.01 8.13 -2.38 -0.02 -0.03 16 31 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 32 H 0.12 -0.85 8.14 -2.39 -0.02 -0.87 16 33 H 0.13 -1.00 8.14 -2.39 -0.02 -1.02 16 34 H 0.07 -0.14 8.10 -2.39 -0.02 -0.16 16 35 H 0.07 -0.16 7.80 -2.39 -0.02 -0.17 16 36 H 0.08 -0.43 8.14 -2.38 -0.02 -0.45 16 37 H 0.10 -0.79 8.08 -2.39 -0.02 -0.81 16 38 H 0.42 -3.75 8.73 -92.71 -0.81 -4.55 16 39 H 0.12 -0.52 7.66 -2.39 -0.02 -0.54 16 40 H 0.12 -0.53 7.66 -2.38 -0.02 -0.55 16 41 H 0.08 1.00 7.82 -2.39 -0.02 0.98 16 42 H 0.39 -0.73 8.70 -74.06 -0.64 -1.38 16 43 H -0.28 -1.28 7.11 99.48 0.71 -0.57 16 44 H -0.30 -2.71 7.11 99.48 0.71 -2.00 16 45 H 0.17 -1.29 5.13 -2.91 -0.01 -1.31 16 46 H 0.16 -1.19 6.29 -2.91 -0.02 -1.21 16 47 H 0.07 -0.58 7.66 -2.39 -0.02 -0.60 16 48 H 0.07 -0.64 7.66 -2.38 -0.02 -0.66 16 49 H 0.12 -1.08 8.14 -2.39 -0.02 -1.10 16 50 H 0.15 -0.16 6.30 -2.91 -0.02 -0.18 16 51 H 0.09 -0.41 7.89 -2.39 -0.02 -0.43 16 52 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 Total: 0.00 -34.22 432.40 1.58 -32.63 By element: Atomic # 1 Polarization: -18.47 SS G_CDS: -0.45 Total: -18.92 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 5.82 Total: 12.47 kcal Atomic # 7 Polarization: 1.24 SS G_CDS: -2.36 Total: -1.12 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -3.49 Total: -27.82 kcal Atomic # 14 Polarization: 0.71 SS G_CDS: 2.05 Total: 2.76 kcal Total: -34.22 1.58 -32.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_4974312.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.044 kcal (2) G-P(sol) polarization free energy of solvation -34.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds