Wall clock time and date at job start Tue Mar 9 2021 13:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 116.99884 * 2 1 4 4 O 1.20823 * 119.99922 * 359.72471 * 3 2 1 5 5 C 1.50701 * 120.00235 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47371 * 179.72822 * 5 3 2 7 7 C 1.52995 * 109.47079 * 180.02562 * 6 5 3 8 8 H 1.08998 * 112.84868 * 316.19054 * 7 6 5 9 9 C 1.53780 * 113.61822 * 87.50205 * 7 6 5 10 10 C 1.53780 * 87.08279 * 139.97880 * 9 7 6 11 11 H 1.09001 * 113.60892 * 89.11744 * 10 9 7 12 12 N 1.46491 * 113.68873 * 220.00800 * 10 9 7 13 13 C 1.34781 * 120.00063 * 252.53684 * 12 10 9 14 14 O 1.21702 * 120.00141 * 359.97438 * 13 12 10 15 15 C 1.46585 * 120.00243 * 180.02562 * 13 12 10 16 16 C 1.36648 * 125.45780 * 179.97438 * 15 13 12 17 17 C 1.37477 * 113.29414 * 179.97438 * 16 15 13 18 18 C 1.50699 * 122.44637 * 179.97438 * 17 16 15 19 19 C 1.33814 * 115.09950 * 0.02562 * 17 16 15 20 20 C 1.50702 * 124.51666 * 179.97438 * 19 17 16 21 21 O 1.42901 * 109.47201 * 246.66904 * 20 19 17 22 22 Si 1.86306 * 109.46909 * 126.67122 * 20 19 17 23 23 S 1.70609 * 110.95786 * 359.75769 * 19 17 16 24 24 C 1.53779 * 113.61350 * 184.99915 * 7 6 5 25 25 H 1.09000 * 109.47533 * 299.99771 * 1 2 3 26 26 H 1.08997 * 109.47563 * 60.00106 * 1 2 3 27 27 H 1.08999 * 109.46864 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46735 * 299.72666 * 5 3 2 29 29 H 1.08994 * 109.47123 * 59.72201 * 5 3 2 30 30 H 1.09000 * 109.46490 * 300.00240 * 6 5 3 31 31 H 1.09006 * 109.47105 * 59.99458 * 6 5 3 32 32 H 1.09004 * 113.61123 * 254.53239 * 9 7 6 33 33 H 1.09001 * 113.61059 * 25.42588 * 9 7 6 34 34 H 0.97006 * 120.00670 * 72.53652 * 12 10 9 35 35 H 1.08001 * 123.34906 * 359.97438 * 16 15 13 36 36 H 1.08993 * 109.47341 * 95.10043 * 18 17 16 37 37 H 1.08997 * 109.47011 * 215.10130 * 18 17 16 38 38 H 1.09008 * 109.47193 * 335.10076 * 18 17 16 39 39 H 1.09004 * 109.47328 * 6.67277 * 20 19 17 40 40 H 0.96701 * 113.99966 * 300.00903 * 21 20 19 41 41 H 1.48499 * 110.00015 * 58.68114 * 22 20 19 42 42 H 1.48504 * 109.99626 * 180.02562 * 22 20 19 43 43 H 1.09007 * 113.61575 * 334.56407 * 24 7 6 44 44 H 1.08999 * 113.61984 * 105.38226 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0050 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7422 -0.0073 7 6 5.5279 2.8222 -0.0085 8 1 5.9889 2.1236 0.6896 9 6 6.1456 2.7870 -1.4164 10 6 7.1378 3.8529 -0.9223 11 1 8.0400 3.4356 -0.4750 12 7 7.4229 4.8951 -1.9115 13 6 8.6180 4.9245 -2.5340 14 8 9.4605 4.0856 -2.2739 15 6 8.9036 5.9677 -3.5234 16 6 10.0726 6.1029 -4.2179 17 6 10.0702 7.1706 -5.0839 18 6 11.2545 7.5105 -5.9516 19 6 8.9397 7.8864 -5.0992 20 6 8.7075 9.0974 -5.9657 21 8 8.5916 10.2584 -5.1407 22 14 7.1372 8.8702 -6.9422 23 16 7.7944 7.2418 -4.0113 24 6 6.0696 4.2568 0.1076 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.9561 0.7849 0.8917 29 1 3.9559 0.7768 -0.8883 30 1 3.6101 3.2321 -0.8995 31 1 3.6103 3.2403 0.8805 32 1 6.6148 1.8346 -1.6636 33 1 5.4738 3.1441 -2.1969 34 1 6.7517 5.5641 -2.1186 35 1 10.9146 5.4372 -4.0983 36 1 11.1242 7.0618 -6.9363 37 1 11.3318 8.5930 -6.0530 38 1 12.1642 7.1226 -5.4931 39 1 9.5466 9.2205 -6.6505 40 1 7.8638 10.2182 -4.5052 41 1 5.9904 8.6695 -6.0204 42 1 6.8972 10.0575 -7.8013 43 1 5.3771 5.0159 -0.2563 44 1 6.4764 4.4917 1.0912 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475074_6739946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:28:39 Heat of formation + Delta-G solvation = -106.170239 kcal Electronic energy + Delta-G solvation = -26193.132819 eV Core-core repulsion = 22204.360604 eV Total energy + Delta-G solvation = -3988.772215 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.59997 -41.25237 -40.08041 -39.32113 -37.71819 -37.61850 -35.28344 -33.48496 -32.32543 -29.83644 -29.15019 -27.47951 -26.69944 -26.19832 -24.53459 -23.01111 -21.89299 -21.48953 -20.75731 -20.19884 -19.35747 -18.62464 -17.92230 -17.69056 -17.54604 -17.49589 -17.12793 -16.31042 -16.25746 -16.01663 -15.85087 -15.45272 -15.30852 -14.80561 -14.59168 -14.39445 -14.13931 -14.05155 -13.84908 -13.47107 -13.42141 -13.40490 -13.16732 -13.05840 -13.00293 -12.73982 -12.48641 -12.35021 -12.26493 -11.92871 -11.82841 -11.79247 -11.71048 -11.41552 -11.26027 -11.13644 -10.95615 -10.21466 -9.73094 -9.45698 -5.00887 -0.71121 0.26203 0.67385 1.08140 1.15318 1.25030 1.50764 1.77133 1.87209 2.00913 2.03231 3.24901 3.47526 3.50601 3.51563 3.65355 3.74293 3.83579 3.84888 4.07957 4.15691 4.22604 4.24593 4.25801 4.30248 4.43853 4.50378 4.52997 4.64247 4.66036 4.69882 4.76591 4.78809 4.86188 4.87421 4.93312 5.00689 5.05627 5.06474 5.22869 5.29963 5.31483 5.40467 5.41109 5.58158 6.29902 6.30878 6.69153 6.97810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.455 3.545 4 O -0.545 6.545 5 C -0.110 4.110 6 C -0.091 4.091 7 C -0.095 4.095 8 H 0.112 0.888 9 C -0.146 4.146 10 C 0.111 3.889 11 H 0.103 0.897 12 N -0.706 5.706 13 C 0.590 3.410 14 O -0.569 6.569 15 C -0.280 4.280 16 C -0.053 4.053 17 C -0.099 4.099 18 C -0.102 4.102 19 C -0.230 4.230 20 C -0.049 4.049 21 O -0.540 6.540 22 Si 0.739 3.261 23 S 0.220 5.780 24 C -0.135 4.135 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.408 0.592 35 H 0.152 0.848 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.141 0.859 40 H 0.384 0.616 41 H -0.259 1.259 42 H -0.279 1.279 43 H 0.095 0.905 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 -1.726 -1.678 3.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C 0.301 3.699 4 O -0.435 6.435 5 C -0.147 4.147 6 C -0.129 4.129 7 C -0.114 4.114 8 H 0.130 0.870 9 C -0.184 4.184 10 C 0.007 3.993 11 H 0.121 0.879 12 N -0.356 5.356 13 C 0.377 3.623 14 O -0.450 6.450 15 C -0.400 4.400 16 C -0.087 4.087 17 C -0.112 4.112 18 C -0.161 4.161 19 C -0.350 4.350 20 C -0.159 4.159 21 O -0.348 6.348 22 Si 0.640 3.360 23 S 0.490 5.510 24 C -0.173 4.173 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.142 0.858 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.245 0.755 35 H 0.169 0.831 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.159 0.841 40 H 0.233 0.767 41 H -0.184 1.184 42 H -0.205 1.205 43 H 0.114 0.886 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.490 -1.146 -1.562 3.991 hybrid contribution 0.827 0.539 0.614 1.162 sum -2.663 -0.608 -0.949 2.891 Atomic orbital electron populations 1.23485 0.75267 1.05480 1.02318 1.86518 1.24667 1.33567 1.83739 1.24603 0.93613 0.80796 0.70918 1.90670 1.68402 1.37437 1.47032 1.21565 0.84808 1.00461 1.07865 1.21324 0.94480 0.93878 1.03225 1.22311 0.94111 0.97492 0.97460 0.86982 1.23582 0.97856 0.99347 0.97638 1.22691 0.98007 0.88924 0.89648 0.87906 1.45849 1.15304 1.32512 1.41935 1.17203 0.82228 0.83002 0.79846 1.90821 1.47692 1.40870 1.65632 1.24517 1.01671 1.04946 1.08845 1.20839 0.97175 0.97181 0.93477 1.18834 0.96979 0.95405 0.99979 1.20688 0.93692 1.02676 0.99000 1.24546 0.99404 1.04637 1.06400 1.24802 1.14047 0.81407 0.95691 1.86651 1.56088 1.39083 1.52972 0.93897 0.73305 0.86174 0.82591 1.82702 1.14349 1.19805 1.34163 1.23405 0.96767 0.97802 0.99331 0.92158 0.92180 0.85482 0.85394 0.85821 0.91635 0.91355 0.90740 0.89188 0.75548 0.83059 0.88855 0.90680 0.90830 0.84103 0.76663 1.18392 1.20515 0.88648 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.87 10.57 -51.41 -0.54 -1.41 16 3 C 0.46 1.27 7.96 71.24 0.57 1.84 16 4 O -0.55 -5.18 15.73 21.97 0.35 -4.83 16 5 C -0.11 0.55 5.80 29.85 0.17 0.72 16 6 C -0.09 0.39 4.34 30.59 0.13 0.53 16 7 C -0.10 0.60 3.65 -10.27 -0.04 0.56 16 8 H 0.11 -0.93 8.13 -2.39 -0.02 -0.95 16 9 C -0.15 0.56 7.43 31.12 0.23 0.80 16 10 C 0.11 -0.12 4.24 45.52 0.19 0.08 16 11 H 0.10 0.28 7.46 -2.39 -0.02 0.26 16 12 N -0.71 -0.35 5.35 -444.10 -2.38 -2.72 16 13 C 0.59 3.96 7.78 86.42 0.67 4.64 16 14 O -0.57 -8.21 16.44 -4.36 -0.07 -8.28 16 15 C -0.28 -1.03 6.45 24.08 0.16 -0.87 16 16 C -0.05 -0.18 9.78 21.72 0.21 0.03 16 17 C -0.10 -0.03 5.78 -21.05 -0.12 -0.15 16 18 C -0.10 0.38 9.48 71.24 0.68 1.05 16 19 C -0.23 0.21 4.83 24.68 0.12 0.33 16 20 C -0.05 0.12 2.77 71.24 0.20 0.31 16 21 O -0.54 -0.38 12.88 -148.98 -1.92 -2.30 16 22 Si 0.74 -2.71 32.12 68.60 2.20 -0.51 16 23 S 0.22 -0.37 20.82 -56.49 -1.18 -1.54 16 24 C -0.13 0.70 7.39 31.12 0.23 0.93 16 25 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 26 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 27 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 28 H 0.13 -1.13 8.14 -2.38 -0.02 -1.15 16 29 H 0.12 -0.98 8.14 -2.39 -0.02 -1.00 16 30 H 0.06 -0.14 7.80 -2.39 -0.02 -0.16 16 31 H 0.07 -0.15 8.10 -2.38 -0.02 -0.17 16 32 H 0.07 -0.22 8.14 -2.38 -0.02 -0.24 16 33 H 0.09 -0.38 7.89 -2.39 -0.02 -0.39 16 34 H 0.41 -1.60 7.84 -92.70 -0.73 -2.33 16 35 H 0.15 0.58 8.06 -2.91 -0.02 0.55 16 36 H 0.09 -0.64 8.14 -2.39 -0.02 -0.65 16 37 H 0.07 -0.30 6.99 -2.39 -0.02 -0.32 16 38 H 0.07 -0.28 8.10 -2.38 -0.02 -0.29 16 39 H 0.14 -0.66 6.25 -2.38 -0.01 -0.67 16 40 H 0.38 -1.84 8.70 -74.06 -0.64 -2.48 16 41 H -0.26 0.30 7.11 99.48 0.71 1.01 16 42 H -0.28 -0.80 7.11 99.48 0.71 -0.09 16 43 H 0.10 -0.60 8.08 -2.38 -0.02 -0.62 16 44 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 Total: 0.00 -21.52 384.88 0.76 -20.76 By element: Atomic # 1 Polarization: -10.81 SS G_CDS: -0.30 Total: -11.11 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: 4.60 Total: 11.95 kcal Atomic # 7 Polarization: -0.35 SS G_CDS: -2.38 Total: -2.72 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -2.19 Total: -16.83 kcal Atomic # 14 Polarization: -2.71 SS G_CDS: 2.20 Total: -0.51 kcal Atomic # 16 Polarization: -0.37 SS G_CDS: -1.18 Total: -1.54 kcal Total: -21.52 0.76 -20.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_6739946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.411 kcal (2) G-P(sol) polarization free energy of solvation -21.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds