Wall clock time and date at job start Tue Mar 9 2021 13:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 116.99579 * 2 1 4 4 O 1.20819 * 120.00199 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99505 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.46735 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47060 * 180.02562 * 6 5 3 8 8 H 1.09006 * 112.85174 * 314.67202 * 7 6 5 9 9 C 1.53785 * 113.61469 * 85.86121 * 7 6 5 10 10 C 1.53960 * 87.01698 * 139.95194 * 9 7 6 11 11 H 1.09004 * 113.53363 * 89.19349 * 10 9 7 12 12 N 1.46492 * 113.66740 * 220.06706 * 10 9 7 13 13 C 1.34777 * 120.00298 * 252.56118 * 12 10 9 14 14 O 1.21281 * 120.00050 * 0.02562 * 13 12 10 15 15 C 1.50704 * 120.00268 * 179.97438 * 13 12 10 16 16 N 1.46503 * 109.47165 * 179.97438 * 15 13 12 17 17 C 1.36831 * 125.06471 * 265.02951 * 16 15 13 18 18 C 1.34234 * 109.93688 * 180.02562 * 17 16 15 19 19 C 1.50701 * 126.49981 * 180.02562 * 18 17 16 20 20 O 1.42893 * 109.46994 * 255.02025 * 19 18 17 21 21 Si 1.86305 * 109.47059 * 15.01766 * 19 18 17 22 22 C 1.46486 * 107.00209 * 359.97438 * 18 17 16 23 23 C 1.39592 * 134.04035 * 180.02562 * 22 18 17 24 24 C 1.36667 * 119.76138 * 179.24221 * 23 22 18 25 25 C 1.38786 * 120.53169 * 0.65010 * 24 23 22 26 26 C 1.37792 * 120.66335 * 359.58945 * 25 24 23 27 27 C 1.37694 * 125.05897 * 84.72728 * 16 15 13 28 28 C 1.53781 * 113.61747 * 183.47449 * 7 6 5 29 29 H 1.09000 * 109.47246 * 299.99833 * 1 2 3 30 30 H 1.09003 * 109.47398 * 60.00020 * 1 2 3 31 31 H 1.09001 * 109.46940 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46797 * 60.00347 * 5 3 2 33 33 H 1.08992 * 109.47518 * 300.00344 * 5 3 2 34 34 H 1.09002 * 109.47398 * 300.00410 * 6 5 3 35 35 H 1.09001 * 109.47194 * 60.00591 * 6 5 3 36 36 H 1.08990 * 113.61776 * 254.52903 * 9 7 6 37 37 H 1.09003 * 113.61076 * 25.43911 * 9 7 6 38 38 H 0.97001 * 120.00324 * 72.56172 * 12 10 9 39 39 H 1.09001 * 109.47099 * 300.00618 * 15 13 12 40 40 H 1.09007 * 109.46642 * 60.00122 * 15 13 12 41 41 H 1.08005 * 125.02896 * 359.97438 * 17 16 15 42 42 H 1.08996 * 109.47212 * 135.01777 * 19 18 17 43 43 H 0.96701 * 114.00297 * 59.99856 * 20 19 18 44 44 H 1.48497 * 109.99913 * 179.97438 * 21 19 18 45 45 H 1.48501 * 110.00114 * 301.32339 * 21 19 18 46 46 H 1.07998 * 120.11692 * 359.97438 * 23 22 18 47 47 H 1.08000 * 119.73324 * 180.21442 * 24 23 22 48 48 H 1.07998 * 119.66895 * 179.55792 * 25 24 23 49 49 H 1.08000 * 120.10792 * 180.02562 * 26 25 24 50 50 H 1.09004 * 113.61304 * 334.56532 * 28 7 6 51 51 H 1.08993 * 113.61499 * 105.38745 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 6 5.5279 2.8223 -0.0002 8 1 5.9877 2.1396 0.7145 9 6 6.1484 2.7522 -1.4056 10 6 7.1396 3.8319 -0.9341 11 1 8.0409 3.4249 -0.4757 12 7 7.4253 4.8506 -1.9473 13 6 8.6213 4.8666 -2.5684 14 8 9.4609 4.0372 -2.2889 15 6 8.9150 5.9142 -3.6111 16 7 10.2704 5.7185 -4.1318 17 6 11.3877 6.3652 -3.6783 18 6 12.4644 5.9573 -4.3685 19 6 13.8833 6.4271 -4.1759 20 8 14.2400 7.3133 -5.2387 21 14 14.0260 7.3211 -2.5476 22 6 11.9988 4.9682 -5.3434 23 6 12.6296 4.2009 -6.3242 24 6 11.8956 3.3328 -7.0827 25 6 10.5253 3.2173 -6.8949 26 6 9.8817 3.9687 -5.9358 27 6 10.6104 4.8521 -5.1465 28 6 6.0695 4.2591 0.0844 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9563 0.7806 -0.8892 33 1 3.9557 0.7810 0.8907 34 1 3.6106 3.2357 -0.8906 35 1 3.6100 3.2368 0.8894 36 1 6.6182 1.7943 -1.6283 37 1 5.4783 3.0902 -2.1961 38 1 6.7537 5.5138 -2.1712 39 1 8.1962 5.8274 -4.4260 40 1 8.8380 6.9048 -3.1626 41 1 11.4012 7.0962 -2.8833 42 1 14.5540 5.5680 -4.1787 43 1 13.6836 8.1021 -5.2965 44 1 15.4207 7.7889 -2.3456 45 1 13.0930 8.4762 -2.5189 46 1 13.6957 4.2844 -6.4751 47 1 12.3847 2.7369 -7.8391 48 1 9.9577 2.5320 -7.5069 49 1 8.8151 3.8714 -5.7970 50 1 5.3777 5.0097 -0.2980 51 1 6.4743 4.5161 1.0632 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475074_9818708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:28:59 Heat of formation + Delta-G solvation = -61.901888 kcal Electronic energy + Delta-G solvation = -32907.547699 eV Core-core repulsion = 28354.127046 eV Total energy + Delta-G solvation = -4553.420652 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.53519 -41.57008 -41.02581 -39.51572 -38.14837 -37.70594 -37.60612 -35.19800 -34.12567 -33.26088 -31.41686 -30.24052 -29.32747 -28.78976 -26.86982 -26.57287 -25.70809 -23.89062 -23.31492 -22.50205 -21.72954 -21.43233 -20.76320 -20.49572 -18.65777 -18.61413 -18.35639 -17.77495 -17.68575 -17.51613 -17.38929 -16.80764 -16.41372 -16.26632 -16.23216 -16.06973 -15.55023 -15.41487 -15.29731 -14.85396 -14.71323 -14.57904 -14.37232 -14.15127 -14.07376 -13.81247 -13.65236 -13.41416 -13.36946 -13.14206 -12.99671 -12.72789 -12.67397 -12.56748 -12.39838 -12.28347 -12.00243 -11.89943 -11.81800 -11.73553 -11.69276 -11.37663 -11.18807 -11.02749 -10.53662 -10.44955 -10.03733 -9.15813 -8.63099 -4.86412 0.14381 0.64459 1.15032 1.35169 1.42622 1.48700 1.58408 1.69196 1.78122 1.97192 2.27729 2.95494 3.53057 3.53958 3.55169 3.62569 3.67342 3.71390 3.77943 3.83687 3.87322 3.89522 4.03793 4.14433 4.17441 4.22152 4.24835 4.26386 4.30125 4.30689 4.50172 4.54134 4.59214 4.65359 4.69899 4.70722 4.72005 4.79165 4.81477 4.89490 4.90062 4.96095 5.09129 5.12980 5.14066 5.25266 5.36047 5.43665 5.51191 5.63873 5.66745 5.73995 5.75519 6.19512 6.24130 6.52047 6.60293 6.68875 7.18253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.370 6.370 3 C 0.455 3.545 4 O -0.544 6.544 5 C -0.111 4.111 6 C -0.090 4.090 7 C -0.100 4.100 8 H 0.105 0.895 9 C -0.146 4.146 10 C 0.117 3.883 11 H 0.094 0.906 12 N -0.703 5.703 13 C 0.492 3.508 14 O -0.568 6.568 15 C 0.086 3.914 16 N -0.466 5.466 17 C 0.074 3.926 18 C -0.216 4.216 19 C -0.050 4.050 20 O -0.553 6.553 21 Si 0.765 3.235 22 C -0.116 4.116 23 C -0.088 4.088 24 C -0.154 4.154 25 C -0.107 4.107 26 C -0.134 4.134 27 C 0.091 3.909 28 C -0.130 4.130 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.419 0.581 39 H 0.141 0.859 40 H 0.160 0.840 41 H 0.197 0.803 42 H 0.104 0.896 43 H 0.384 0.616 44 H -0.301 1.301 45 H -0.260 1.260 46 H 0.119 0.881 47 H 0.136 0.864 48 H 0.145 0.855 49 H 0.132 0.868 50 H 0.100 0.900 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.642 0.555 3.059 7.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C 0.301 3.699 4 O -0.434 6.434 5 C -0.148 4.148 6 C -0.128 4.128 7 C -0.119 4.119 8 H 0.123 0.877 9 C -0.185 4.185 10 C 0.012 3.988 11 H 0.112 0.888 12 N -0.355 5.355 13 C 0.278 3.722 14 O -0.446 6.446 15 C -0.039 4.039 16 N -0.148 5.148 17 C -0.052 4.052 18 C -0.223 4.223 19 C -0.159 4.159 20 O -0.361 6.361 21 Si 0.668 3.332 22 C -0.120 4.120 23 C -0.106 4.106 24 C -0.172 4.172 25 C -0.126 4.126 26 C -0.154 4.154 27 C -0.014 4.014 28 C -0.168 4.168 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.257 0.743 39 H 0.158 0.842 40 H 0.177 0.823 41 H 0.213 0.787 42 H 0.122 0.878 43 H 0.232 0.768 44 H -0.229 1.229 45 H -0.185 1.185 46 H 0.137 0.863 47 H 0.154 0.846 48 H 0.163 0.837 49 H 0.150 0.850 50 H 0.118 0.882 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.961 0.615 3.685 7.035 hybrid contribution -0.681 0.717 -1.169 1.531 sum -6.642 1.332 2.516 7.226 Atomic orbital electron populations 1.23488 0.75238 1.05476 1.02350 1.86520 1.24700 1.33629 1.83741 1.24597 0.93601 0.80796 0.70941 1.90667 1.68377 1.37383 1.46995 1.21568 0.84820 1.00716 1.07672 1.21317 0.94594 0.93610 1.03250 1.22322 0.93983 0.97916 0.97639 0.87689 1.23591 0.98091 0.99240 0.97574 1.22518 0.97338 0.89500 0.89463 0.88817 1.45856 1.15745 1.33700 1.40233 1.21378 0.82254 0.85878 0.82707 1.90797 1.47717 1.40929 1.65197 1.21986 0.82772 1.00862 0.98244 1.43439 1.07157 1.34775 1.29433 1.22005 0.84364 0.99039 0.99745 1.20705 0.95803 1.03938 1.01848 1.24578 0.92504 0.97597 1.01196 1.86560 1.60258 1.36599 1.52678 0.94044 0.77851 0.81455 0.79895 1.19337 0.92809 1.00420 0.99432 1.20452 0.99885 0.95509 0.94778 1.20918 0.94642 1.00305 1.01382 1.21128 0.94717 0.99094 0.97672 1.20239 0.99861 0.97780 0.97542 1.18399 0.94168 0.95760 0.93052 1.23355 0.96808 0.97294 0.99390 0.92118 0.92138 0.85530 0.86026 0.85628 0.91444 0.91427 0.91682 0.88973 0.74339 0.84152 0.82252 0.78680 0.87829 0.76759 1.22889 1.18549 0.86330 0.84577 0.83706 0.85024 0.88170 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.37 -0.67 10.57 -51.40 -0.54 -1.22 16 3 C 0.46 0.92 7.96 71.24 0.57 1.48 16 4 O -0.54 -4.61 15.73 21.99 0.35 -4.26 16 5 C -0.11 0.64 5.81 29.85 0.17 0.81 16 6 C -0.09 0.52 4.33 30.59 0.13 0.66 16 7 C -0.10 0.81 3.64 -10.27 -0.04 0.77 16 8 H 0.10 -0.94 8.14 -2.38 -0.02 -0.96 16 9 C -0.15 0.93 7.45 31.18 0.23 1.16 16 10 C 0.12 -0.61 4.24 45.58 0.19 -0.41 16 11 H 0.09 0.01 7.47 -2.39 -0.02 -0.01 16 12 N -0.70 5.24 5.36 -439.75 -2.36 2.89 16 13 C 0.49 -0.79 7.90 87.66 0.69 -0.10 16 14 O -0.57 -5.47 16.02 -3.03 -0.05 -5.52 16 15 C 0.09 -0.60 6.48 85.63 0.56 -0.04 16 16 N -0.47 -0.85 2.27 -519.96 -1.18 -2.03 16 17 C 0.07 0.11 9.89 83.00 0.82 0.93 16 18 C -0.22 -1.27 5.57 -18.63 -0.10 -1.37 16 19 C -0.05 -0.22 3.06 71.24 0.22 0.00 16 20 O -0.55 -3.77 12.88 -148.98 -1.92 -5.69 16 21 Si 0.76 -0.13 30.82 68.60 2.11 1.99 16 22 C -0.12 -1.15 6.35 -20.20 -0.13 -1.28 16 23 C -0.09 -0.84 10.05 22.23 0.22 -0.62 16 24 C -0.15 -1.02 9.97 22.03 0.22 -0.80 16 25 C -0.11 -0.53 10.01 22.30 0.22 -0.30 16 26 C -0.13 -0.71 10.00 22.37 0.22 -0.49 16 27 C 0.09 0.67 6.79 39.03 0.27 0.94 16 28 C -0.13 1.13 7.40 31.12 0.23 1.36 16 29 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 30 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 31 H 0.13 -0.89 8.14 -2.39 -0.02 -0.91 16 32 H 0.12 -1.03 8.14 -2.39 -0.02 -1.05 16 33 H 0.13 -1.15 8.14 -2.39 -0.02 -1.17 16 34 H 0.07 -0.28 7.83 -2.39 -0.02 -0.30 16 35 H 0.07 -0.24 8.10 -2.39 -0.02 -0.26 16 36 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 37 H 0.09 -0.67 7.92 -2.39 -0.02 -0.69 16 38 H 0.42 -5.94 8.73 -92.71 -0.81 -6.75 16 39 H 0.14 -1.62 8.14 -2.39 -0.02 -1.64 16 40 H 0.16 -2.34 8.12 -2.38 -0.02 -2.36 16 41 H 0.20 -1.03 6.27 -2.91 -0.02 -1.05 16 42 H 0.10 0.55 7.96 -2.39 -0.02 0.53 16 43 H 0.38 0.07 8.70 -74.06 -0.64 -0.57 16 44 H -0.30 -2.23 7.11 99.48 0.71 -1.52 16 45 H -0.26 0.05 7.00 99.48 0.70 0.74 16 46 H 0.12 1.02 8.06 -2.91 -0.02 1.00 16 47 H 0.14 0.34 8.06 -2.91 -0.02 0.32 16 48 H 0.15 -0.04 8.06 -2.91 -0.02 -0.06 16 49 H 0.13 0.08 8.06 -2.91 -0.02 0.05 16 50 H 0.10 -1.06 8.08 -2.38 -0.02 -1.08 16 51 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 Total: 0.00 -30.67 429.85 1.84 -28.83 By element: Atomic # 1 Polarization: -18.35 SS G_CDS: -0.47 Total: -18.82 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 5.90 Total: 3.84 kcal Atomic # 7 Polarization: 4.39 SS G_CDS: -3.54 Total: 0.86 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -2.16 Total: -16.69 kcal Atomic # 14 Polarization: -0.13 SS G_CDS: 2.11 Total: 1.99 kcal Total: -30.67 1.84 -28.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475074_9818708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.072 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds