Wall clock time and date at job start Tue Mar 9 2021 13:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 117.00112 * 2 1 4 4 O 1.20829 * 120.00219 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00204 * 180.02562 * 3 2 1 6 6 H 1.09006 * 109.47275 * 59.99396 * 5 3 2 7 7 C 1.52995 * 109.47437 * 179.97438 * 5 3 2 8 8 C 1.53003 * 109.47323 * 179.97438 * 7 5 3 9 9 C 1.53005 * 109.46729 * 300.00225 * 8 7 5 10 10 H 1.08996 * 109.47034 * 299.99296 * 9 8 7 11 11 N 1.46504 * 109.46790 * 180.02562 * 9 8 7 12 12 C 1.34776 * 120.00067 * 154.99957 * 11 9 8 13 13 O 1.21280 * 119.99842 * 359.97438 * 12 11 9 14 14 C 1.50694 * 119.99788 * 180.02562 * 12 11 9 15 15 C 1.53001 * 109.47324 * 65.00254 * 14 12 11 16 16 O 1.42898 * 109.47043 * 185.00039 * 14 12 11 17 17 C 1.35897 * 117.00184 * 155.32333 * 16 14 12 18 18 C 1.38730 * 120.05817 * 5.08490 * 17 16 14 19 19 C 1.38143 * 119.94425 * 179.74450 * 18 17 16 20 20 C 1.38259 * 120.05838 * 0.50662 * 19 18 17 21 21 C 1.50701 * 119.94863 * 179.74346 * 20 19 18 22 22 O 1.42898 * 109.47138 * 120.02009 * 21 20 19 23 23 Si 1.86309 * 109.46885 * 0.02562 * 21 20 19 24 24 C 1.38265 * 120.11278 * 359.76804 * 20 19 18 25 25 C 1.38144 * 120.05450 * 359.97438 * 24 20 19 26 26 C 1.52995 * 109.47077 * 60.00019 * 9 8 7 27 27 C 1.52994 * 109.47258 * 299.99602 * 26 9 8 28 28 H 1.08986 * 109.46869 * 60.00295 * 1 2 3 29 29 H 1.09006 * 109.46950 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46602 * 299.99931 * 1 2 3 31 31 H 1.09006 * 109.46949 * 59.99726 * 7 5 3 32 32 H 1.08995 * 109.47270 * 300.00086 * 7 5 3 33 33 H 1.08990 * 109.46795 * 60.00125 * 8 7 5 34 34 H 1.08993 * 109.46864 * 180.02562 * 8 7 5 35 35 H 0.97000 * 119.99992 * 334.99817 * 11 9 8 36 36 H 1.09000 * 109.47206 * 304.99880 * 14 12 11 37 37 H 1.09003 * 109.47448 * 180.02562 * 15 14 12 38 38 H 1.09005 * 109.46747 * 299.99538 * 15 14 12 39 39 H 1.09000 * 109.47284 * 59.99674 * 15 14 12 40 40 H 1.08002 * 120.02494 * 359.97438 * 18 17 16 41 41 H 1.08003 * 119.97207 * 180.23086 * 19 18 17 42 42 H 1.09004 * 109.47453 * 240.02704 * 21 20 19 43 43 H 0.96698 * 114.00643 * 300.00266 * 22 21 20 44 44 H 1.48500 * 109.99783 * 179.97438 * 23 21 20 45 45 H 1.48505 * 109.99686 * 301.31685 * 23 21 20 46 46 H 1.08004 * 119.97568 * 179.97438 * 24 20 19 47 47 H 1.08001 * 120.03074 * 179.97438 * 25 24 20 48 48 H 1.08998 * 109.47461 * 60.00161 * 26 9 8 49 49 H 1.09004 * 109.46832 * 179.97438 * 26 9 8 50 50 H 1.08998 * 109.47249 * 180.02562 * 27 26 9 51 51 H 1.09000 * 109.47213 * 299.99864 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9558 0.7808 -0.8908 7 6 4.0002 2.7420 -0.0011 8 6 5.5282 2.8220 -0.0011 9 6 6.0751 2.1288 1.2485 10 1 5.6854 2.6233 2.1382 11 7 7.5381 2.2060 1.2489 12 6 8.2161 2.1402 2.4118 13 8 7.6150 2.0175 3.4580 14 6 9.7209 2.2202 2.4122 15 6 10.1584 3.6009 1.9191 16 8 10.2086 2.0117 3.7391 17 6 11.4783 1.5433 3.8633 18 6 12.2753 1.3894 2.7383 19 6 13.5673 0.9180 2.8678 20 6 14.0629 0.5898 4.1162 21 6 15.4708 0.0703 4.2540 22 8 16.2216 0.9468 5.0966 23 14 16.2701 -0.0106 2.5730 24 6 13.2687 0.7369 5.2384 25 6 11.9777 1.2129 5.1148 26 6 5.6412 0.6617 1.2489 27 6 4.1134 0.5817 1.2489 28 1 -0.3632 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 3.6108 3.2363 0.8889 32 1 3.6102 3.2359 -0.8910 33 1 5.9178 2.3276 -0.8908 34 1 5.8372 3.8673 -0.0010 35 1 8.0188 2.3045 0.4121 36 1 10.1257 1.4533 1.7517 37 1 11.2469 3.6586 1.9189 38 1 9.7864 3.7598 0.9069 39 1 9.7536 4.3677 2.5795 40 1 11.8872 1.6414 1.7624 41 1 14.1895 0.8015 1.9927 42 1 15.4488 -0.9266 4.6942 43 1 16.2830 1.8534 4.7659 44 1 17.6593 -0.5209 2.6953 45 1 15.4809 -0.8941 1.6774 46 1 13.6579 0.4795 6.2124 47 1 11.3576 1.3273 5.9916 48 1 6.0310 0.1672 0.3592 49 1 6.0312 0.1678 2.1389 50 1 3.8043 -0.4636 1.2496 51 1 3.7236 1.0760 2.1387 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475160_10157680.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:29:08 Heat of formation + Delta-G solvation = -167.281923 kcal Electronic energy + Delta-G solvation = -32465.507785 eV Core-core repulsion = 27910.713512 eV Total energy + Delta-G solvation = -4554.794274 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.181 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.95263 -41.69489 -40.78007 -39.41856 -38.72134 -37.55748 -37.12996 -35.49172 -33.46136 -31.99399 -31.88341 -31.61308 -30.78539 -28.55392 -26.70035 -25.73181 -24.59643 -23.88629 -23.84029 -22.46807 -21.87689 -21.47949 -20.76374 -19.50962 -18.75927 -18.57434 -18.06934 -17.83429 -17.47282 -17.28751 -16.84667 -16.75877 -16.41351 -15.97950 -15.87062 -15.63145 -15.29030 -15.15122 -15.08020 -14.94840 -14.65395 -14.41737 -14.27255 -14.08257 -13.97698 -13.74163 -13.59473 -13.51074 -13.30747 -13.19327 -13.02674 -12.87692 -12.69178 -12.40510 -12.20152 -12.17175 -12.06975 -12.03704 -11.87025 -11.65962 -11.58741 -11.48836 -11.35713 -10.85886 -10.39554 -10.15889 -10.04049 -9.20843 -4.97537 0.27542 0.30493 1.08011 1.35557 1.43988 1.50340 1.65937 1.71588 2.00303 2.50657 2.66063 3.42361 3.49212 3.56714 3.58513 3.65796 3.72058 3.73768 3.86188 3.88502 3.91874 3.96099 4.07677 4.17335 4.25675 4.26718 4.29571 4.29850 4.32107 4.38077 4.42436 4.51267 4.60029 4.60501 4.66804 4.68429 4.73688 4.77863 4.92327 4.97062 5.04032 5.07465 5.10152 5.13191 5.20279 5.24272 5.26020 5.27112 5.34276 5.45259 5.50077 5.70772 6.28300 6.49280 6.63678 6.80902 7.14147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.460 3.540 4 O -0.541 6.541 5 C -0.074 4.074 6 H 0.141 0.859 7 C -0.100 4.100 8 C -0.112 4.112 9 C 0.143 3.857 10 H 0.061 0.939 11 N -0.701 5.701 12 C 0.515 3.485 13 O -0.571 6.571 14 C 0.063 3.937 15 C -0.173 4.173 16 O -0.315 6.315 17 C 0.122 3.878 18 C -0.201 4.201 19 C -0.074 4.074 20 C -0.161 4.161 21 C -0.075 4.075 22 O -0.559 6.559 23 Si 0.784 3.216 24 C -0.060 4.060 25 C -0.168 4.168 26 C -0.121 4.121 27 C -0.104 4.104 28 H 0.062 0.938 29 H 0.129 0.871 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.422 0.578 36 H 0.130 0.870 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.055 0.945 40 H 0.164 0.836 41 H 0.155 0.845 42 H 0.102 0.898 43 H 0.395 0.605 44 H -0.304 1.304 45 H -0.280 1.280 46 H 0.132 0.868 47 H 0.124 0.876 48 H 0.096 0.904 49 H 0.052 0.948 50 H 0.086 0.914 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.853 0.741 -9.842 10.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.305 3.695 4 O -0.431 6.431 5 C -0.093 4.093 6 H 0.158 0.842 7 C -0.139 4.139 8 C -0.149 4.149 9 C 0.038 3.962 10 H 0.079 0.921 11 N -0.355 5.355 12 C 0.301 3.699 13 O -0.449 6.449 14 C 0.003 3.997 15 C -0.230 4.230 16 O -0.228 6.228 17 C 0.076 3.924 18 C -0.219 4.219 19 C -0.091 4.091 20 C -0.162 4.162 21 C -0.184 4.184 22 O -0.367 6.367 23 Si 0.689 3.311 24 C -0.078 4.078 25 C -0.186 4.186 26 C -0.160 4.160 27 C -0.142 4.142 28 H 0.081 0.919 29 H 0.147 0.853 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.122 0.878 34 H 0.105 0.895 35 H 0.260 0.740 36 H 0.147 0.853 37 H 0.109 0.891 38 H 0.131 0.869 39 H 0.075 0.925 40 H 0.182 0.818 41 H 0.172 0.828 42 H 0.119 0.881 43 H 0.245 0.755 44 H -0.232 1.232 45 H -0.207 1.207 46 H 0.149 0.851 47 H 0.142 0.858 48 H 0.114 0.886 49 H 0.070 0.930 50 H 0.105 0.895 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.458 -0.039 -9.190 9.513 hybrid contribution -0.824 -0.269 0.811 1.187 sum 1.634 -0.308 -8.379 8.542 Atomic orbital electron populations 1.23512 0.75180 1.05580 1.02349 1.86506 1.24648 1.33209 1.83554 1.24431 0.93152 0.80962 0.70944 1.90675 1.68198 1.37458 1.46726 1.21265 0.84914 0.99937 1.03154 0.84175 1.21377 0.95877 0.93100 1.03504 1.21742 0.93783 1.02259 0.97161 1.21041 0.78980 0.96350 0.99817 0.92064 1.45735 1.07204 1.73888 1.08694 1.20575 0.89576 0.75673 0.84073 1.90760 1.71026 1.49663 1.33456 1.22472 0.90862 1.02210 0.84110 1.22384 1.04225 0.92944 1.03432 1.86199 1.27296 1.79839 1.29509 1.19233 0.83723 0.94373 0.95032 1.21498 0.95248 1.06586 0.98557 1.21065 0.95250 0.96066 0.96756 1.20356 0.97345 1.04553 0.93904 1.25206 0.90334 0.95381 1.07470 1.86462 1.73542 1.25451 1.51252 0.93746 0.75196 0.88139 0.73970 1.20891 0.91778 0.95837 0.99320 1.20617 0.96988 1.04942 0.96100 1.21853 0.94516 0.96257 1.03344 1.21428 0.95660 1.01625 0.95491 0.91898 0.85326 0.92402 0.92612 0.90030 0.87773 0.89483 0.73969 0.85296 0.89150 0.86922 0.92545 0.81834 0.82822 0.88072 0.75519 1.23247 1.20656 0.85056 0.85824 0.88573 0.92963 0.89512 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.36 -0.96 10.47 -51.35 -0.54 -1.50 16 3 C 0.46 1.74 7.25 71.24 0.52 2.26 16 4 O -0.54 -5.67 15.73 21.96 0.35 -5.32 16 5 C -0.07 0.25 2.63 -11.54 -0.03 0.22 16 6 H 0.14 -1.23 8.14 -2.38 -0.02 -1.25 16 7 C -0.10 0.36 4.49 30.59 0.14 0.50 16 8 C -0.11 0.98 5.39 30.60 0.16 1.14 16 9 C 0.14 -0.53 2.45 44.99 0.11 -0.42 16 10 H 0.06 0.21 7.58 -2.39 -0.02 0.19 16 11 N -0.70 4.30 5.04 -442.54 -2.23 2.07 16 12 C 0.52 1.13 7.14 87.66 0.63 1.76 16 13 O -0.57 -8.11 16.17 15.96 0.26 -7.85 16 14 C 0.06 -0.17 2.64 29.85 0.08 -0.09 16 15 C -0.17 1.37 9.12 71.98 0.66 2.02 16 16 O -0.32 -1.92 9.34 -73.40 -0.69 -2.61 16 17 C 0.12 0.41 6.60 22.51 0.15 0.56 16 18 C -0.20 0.61 8.24 22.36 0.18 0.79 16 19 C -0.07 0.26 8.66 22.25 0.19 0.45 16 20 C -0.16 0.02 5.39 -19.85 -0.11 -0.09 16 21 C -0.07 0.06 2.82 71.24 0.20 0.26 16 22 O -0.56 -0.21 12.77 -148.98 -1.90 -2.11 16 23 Si 0.78 -3.00 29.78 68.60 2.04 -0.96 16 24 C -0.06 -0.18 9.60 22.25 0.21 0.04 16 25 C -0.17 -0.86 9.99 22.37 0.22 -0.64 16 26 C -0.12 0.44 5.50 30.59 0.17 0.61 16 27 C -0.10 0.25 5.13 30.59 0.16 0.41 16 28 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 29 H 0.13 -0.82 8.14 -2.38 -0.02 -0.84 16 30 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 31 H 0.06 0.06 8.10 -2.38 -0.02 0.04 16 32 H 0.08 -0.26 8.10 -2.39 -0.02 -0.28 16 33 H 0.10 -1.45 8.14 -2.39 -0.02 -1.47 16 34 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 35 H 0.42 -6.10 8.39 -92.71 -0.78 -6.87 16 36 H 0.13 -1.19 6.31 -2.39 -0.02 -1.20 16 37 H 0.09 -0.86 6.91 -2.39 -0.02 -0.88 16 38 H 0.11 -1.65 7.93 -2.38 -0.02 -1.67 16 39 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.16 -1.64 5.43 -2.91 -0.02 -1.66 16 41 H 0.15 -1.37 4.87 -2.91 -0.01 -1.38 16 42 H 0.10 0.10 7.96 -2.38 -0.02 0.08 16 43 H 0.39 -3.10 8.70 -74.06 -0.64 -3.74 16 44 H -0.30 -1.34 7.11 99.48 0.71 -0.63 16 45 H -0.28 0.07 7.11 99.48 0.71 0.77 16 46 H 0.13 0.31 8.06 -2.91 -0.02 0.29 16 47 H 0.12 0.74 8.06 -2.91 -0.02 0.72 16 48 H 0.10 -0.81 8.14 -2.39 -0.02 -0.82 16 49 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 50 H 0.09 -0.26 8.11 -2.39 -0.02 -0.28 16 51 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 Total: 0.00 -30.84 413.02 1.71 -29.14 By element: Atomic # 1 Polarization: -21.39 SS G_CDS: -0.42 Total: -21.81 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 4.84 Total: 10.96 kcal Atomic # 7 Polarization: 4.30 SS G_CDS: -2.23 Total: 2.07 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -2.52 Total: -19.39 kcal Atomic # 14 Polarization: -3.00 SS G_CDS: 2.04 Total: -0.96 kcal Total: -30.84 1.71 -29.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475160_10157680.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.146 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds