Wall clock time and date at job start Tue Mar 9 2021 13:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34223 * 117.00192 * 2 1 4 4 O 1.20827 * 120.00059 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00347 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47194 * 300.00481 * 5 3 2 7 7 C 1.53004 * 109.46989 * 59.99736 * 5 3 2 8 8 C 1.52993 * 109.47068 * 179.97438 * 7 5 3 9 9 C 1.52998 * 109.47655 * 300.00448 * 8 7 5 10 10 H 1.09001 * 109.46794 * 299.99886 * 9 8 7 11 11 N 1.46504 * 109.47237 * 179.97438 * 9 8 7 12 12 C 1.34771 * 119.99941 * 84.99980 * 11 9 8 13 13 O 1.21589 * 119.99818 * 359.97438 * 12 11 9 14 14 C 1.47541 * 119.99780 * 180.02562 * 12 11 9 15 15 C 1.40136 * 120.18807 * 179.97438 * 14 12 11 16 16 O 1.35651 * 120.15540 * 359.97438 * 15 14 12 17 17 C 1.42899 * 117.00666 * 179.97438 * 16 15 14 18 18 C 1.38707 * 119.69723 * 180.02562 * 15 14 12 19 19 C 1.38056 * 120.08529 * 359.74292 * 18 15 14 20 20 C 1.38550 * 120.38681 * 0.51809 * 19 18 15 21 21 C 1.50698 * 119.84608 * 179.76250 * 20 19 18 22 22 O 1.42905 * 109.47321 * 119.72092 * 21 20 19 23 23 Si 1.86295 * 109.47516 * 359.71982 * 21 20 19 24 24 C 1.37783 * 120.30088 * 359.47922 * 20 19 18 25 25 C 1.53001 * 109.46764 * 59.99853 * 9 8 7 26 26 C 1.52992 * 109.47295 * 299.99914 * 25 9 8 27 27 H 1.08993 * 109.47104 * 300.00050 * 1 2 3 28 28 H 1.09000 * 109.46616 * 60.00071 * 1 2 3 29 29 H 1.08995 * 109.46864 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46993 * 300.00450 * 7 5 3 31 31 H 1.09002 * 109.46544 * 60.00347 * 7 5 3 32 32 H 1.08996 * 109.47120 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47037 * 60.00793 * 8 7 5 34 34 H 0.97005 * 119.99752 * 265.00153 * 11 9 8 35 35 H 1.09000 * 109.46919 * 300.00095 * 17 16 15 36 36 H 1.09004 * 109.46456 * 59.99628 * 17 16 15 37 37 H 1.08997 * 109.47146 * 179.97438 * 17 16 15 38 38 H 1.08004 * 119.95769 * 179.97438 * 18 15 14 39 39 H 1.08002 * 119.80705 * 180.27437 * 19 18 15 40 40 H 1.09001 * 109.47122 * 239.72192 * 21 20 19 41 41 H 0.96696 * 114.00036 * 299.99741 * 22 21 20 42 42 H 1.48496 * 110.00262 * 180.02562 * 23 21 20 43 43 H 1.48497 * 109.99780 * 301.32070 * 23 21 20 44 44 H 1.08001 * 120.04600 * 180.23462 * 24 20 19 45 45 H 1.09001 * 109.47438 * 60.00428 * 25 9 8 46 46 H 1.09003 * 109.46845 * 180.02562 * 25 9 8 47 47 H 1.09001 * 109.47358 * 180.02562 * 26 25 9 48 48 H 1.09001 * 109.47297 * 300.00600 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9558 0.7808 0.8908 7 6 4.1140 0.5809 -1.2483 8 6 5.6418 0.6616 -1.2481 9 6 6.0751 2.1289 -1.2485 10 1 5.6854 2.6226 -2.1387 11 7 7.5381 2.2060 -1.2476 12 6 8.2171 2.1394 -2.4099 13 8 7.6155 2.0148 -3.4591 14 6 9.6905 2.2165 -2.4089 15 6 10.4006 2.1471 -3.6151 16 8 9.7365 2.0081 -4.7897 17 6 10.5269 1.9450 -5.9785 18 6 11.7856 2.2201 -3.6023 19 6 12.4600 2.3658 -2.4065 20 6 11.7618 2.4295 -1.2114 21 6 12.5106 2.5833 0.0873 22 8 12.1034 3.7921 0.7316 23 14 14.3407 2.6480 -0.2548 24 6 10.3858 2.3586 -1.2056 25 6 5.5276 2.8227 0.0005 26 6 3.9998 2.7421 0.0002 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.8049 -0.4643 -1.2482 31 1 3.7246 1.0749 -2.1385 32 1 6.0319 0.1669 -2.1375 33 1 6.0315 0.1679 -0.3578 34 1 8.0181 2.3051 -0.4104 35 1 11.1081 2.8618 -6.0774 36 1 11.2021 1.0912 -5.9209 37 1 9.8736 1.8334 -6.8438 38 1 12.3371 2.1666 -4.5294 39 1 13.5383 2.4266 -2.4022 40 1 12.2919 1.7346 0.7354 41 1 12.2683 4.5901 0.2111 42 1 15.0903 2.7989 1.0182 43 1 14.7709 1.4101 -0.9533 44 1 9.8456 2.4124 -0.2720 45 1 5.9173 2.3290 0.8907 46 1 5.8359 3.8682 0.0000 47 1 3.6097 3.2368 0.8897 48 1 3.6101 3.2358 -0.8901 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475160_12496546.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:30:41 Heat of formation + Delta-G solvation = -164.245345 kcal Electronic energy + Delta-G solvation = -31244.229559 eV Core-core repulsion = 26845.104581 eV Total energy + Delta-G solvation = -4399.124979 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.165 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.94032 -41.67353 -40.44104 -39.17327 -38.88253 -37.54626 -37.07537 -35.34997 -32.93266 -31.90844 -31.81880 -30.88671 -28.65304 -28.39736 -26.12689 -25.66008 -24.29560 -23.83762 -22.63438 -21.82610 -21.47874 -20.81523 -19.48782 -18.65920 -18.34851 -18.08661 -17.86103 -17.51747 -17.30824 -16.84997 -16.72115 -16.19770 -15.94512 -15.86355 -15.82822 -15.33494 -15.16883 -14.95101 -14.74619 -14.52204 -14.47475 -14.26551 -13.94722 -13.73397 -13.60364 -13.38374 -13.29681 -13.10096 -13.00742 -12.68038 -12.44099 -12.36976 -12.20531 -12.08162 -12.03328 -11.86585 -11.76623 -11.58619 -11.48000 -11.36048 -10.93943 -10.37063 -10.25836 -10.00434 -9.26538 -4.96087 -0.24385 0.23600 1.08040 1.35931 1.66176 1.69463 1.80438 2.01446 2.10307 2.28458 2.70782 3.46452 3.50072 3.53719 3.60632 3.66850 3.72200 3.78310 3.92183 4.01119 4.07779 4.15143 4.19614 4.26136 4.27176 4.29394 4.31141 4.32982 4.36297 4.41658 4.42895 4.58418 4.61853 4.67109 4.69194 4.74594 4.76988 4.90917 4.95623 5.02856 5.07180 5.09199 5.12884 5.24672 5.28376 5.30049 5.34565 5.50929 5.58665 6.31733 6.55297 6.63874 6.83071 7.25076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.462 3.538 4 O -0.540 6.540 5 C -0.075 4.075 6 H 0.138 0.862 7 C -0.102 4.102 8 C -0.120 4.120 9 C 0.144 3.856 10 H 0.063 0.937 11 N -0.712 5.712 12 C 0.557 3.443 13 O -0.564 6.564 14 C -0.196 4.196 15 C 0.170 3.830 16 O -0.313 6.313 17 C 0.011 3.989 18 C -0.213 4.213 19 C -0.044 4.044 20 C -0.167 4.167 21 C -0.062 4.062 22 O -0.553 6.553 23 Si 0.768 3.232 24 C -0.015 4.015 25 C -0.114 4.114 26 C -0.098 4.098 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.129 0.871 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.412 0.588 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.106 0.894 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.114 0.886 41 H 0.396 0.604 42 H -0.303 1.303 43 H -0.284 1.284 44 H 0.152 0.848 45 H 0.098 0.902 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.846 -0.256 1.491 6.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.307 3.693 4 O -0.430 6.430 5 C -0.093 4.093 6 H 0.156 0.844 7 C -0.140 4.140 8 C -0.158 4.158 9 C 0.040 3.960 10 H 0.082 0.918 11 N -0.365 5.365 12 C 0.346 3.654 13 O -0.443 6.443 14 C -0.200 4.200 15 C 0.121 3.879 16 O -0.225 6.225 17 C -0.083 4.083 18 C -0.231 4.231 19 C -0.061 4.061 20 C -0.168 4.168 21 C -0.173 4.173 22 O -0.361 6.361 23 Si 0.675 3.325 24 C -0.034 4.034 25 C -0.152 4.152 26 C -0.136 4.136 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.147 0.853 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.250 0.750 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.124 0.876 38 H 0.179 0.821 39 H 0.173 0.827 40 H 0.131 0.869 41 H 0.246 0.754 42 H -0.231 1.231 43 H -0.211 1.211 44 H 0.170 0.830 45 H 0.117 0.883 46 H 0.102 0.898 47 H 0.099 0.901 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.549 -0.849 1.281 5.758 hybrid contribution -0.660 -0.283 0.039 0.719 sum 4.889 -1.132 1.320 5.190 Atomic orbital electron populations 1.23516 0.75143 1.05587 1.02371 1.86508 1.24676 1.33133 1.83551 1.24355 0.93005 0.80998 0.70960 1.90671 1.68140 1.37439 1.46709 1.21252 0.85103 0.99825 1.03159 0.84434 1.21421 0.95400 1.01653 0.95527 1.21834 0.94662 0.96212 1.03113 1.21008 0.79056 0.96338 0.99630 0.91844 1.45845 1.07267 1.74517 1.08867 1.18299 0.87346 0.75970 0.83836 1.90815 1.70601 1.50299 1.32606 1.19431 0.92595 1.15177 0.92810 1.19432 0.91293 0.91437 0.85727 1.86336 1.36601 1.85848 1.13713 1.23436 0.97341 1.02809 0.84684 1.21465 0.91662 1.08816 1.01178 1.21278 1.00608 0.93274 0.90959 1.20249 0.94078 1.06627 0.95848 1.25015 1.09474 0.90268 0.92497 1.86470 1.86672 1.16058 1.46938 0.93838 0.72580 0.85750 0.80316 1.21106 0.93975 0.92345 0.95982 1.21746 0.94137 1.02053 0.97223 1.21354 0.95493 0.93223 1.03570 0.91928 0.92328 0.85306 0.89392 0.92506 0.92856 0.89183 0.74979 0.90676 0.91031 0.87566 0.82131 0.82653 0.86908 0.75439 1.23094 1.21116 0.83017 0.88343 0.89838 0.90063 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 113.37 1.20 1.20 16 2 O -0.36 -1.39 10.47 -51.34 -0.54 -1.93 16 3 C 0.46 2.44 7.26 71.24 0.52 2.96 16 4 O -0.54 -6.36 15.73 21.96 0.35 -6.01 16 5 C -0.07 0.08 2.63 -11.54 -0.03 0.05 16 6 H 0.14 -0.83 8.14 -2.39 -0.02 -0.85 16 7 C -0.10 0.03 5.14 30.59 0.16 0.18 16 8 C -0.12 0.02 5.49 30.59 0.17 0.18 16 9 C 0.14 0.09 2.45 44.99 0.11 0.21 16 10 H 0.06 0.44 7.58 -2.39 -0.02 0.42 16 11 N -0.71 -0.35 5.03 -445.69 -2.24 -2.59 16 12 C 0.56 4.50 7.73 86.70 0.67 5.17 16 13 O -0.56 -9.61 14.82 16.92 0.25 -9.36 16 14 C -0.20 -0.87 5.89 -20.01 -0.12 -0.99 16 15 C 0.17 0.83 6.70 22.84 0.15 0.98 16 16 O -0.31 -2.62 8.57 -68.75 -0.59 -3.21 16 17 C 0.01 -0.02 9.81 113.37 1.11 1.10 16 18 C -0.21 0.38 9.03 22.34 0.20 0.58 16 19 C -0.04 0.20 8.66 22.30 0.19 0.39 16 20 C -0.17 0.61 5.39 -19.90 -0.11 0.50 16 21 C -0.06 0.31 2.81 71.24 0.20 0.51 16 22 O -0.55 2.51 12.76 -148.98 -1.90 0.61 16 23 Si 0.77 -4.31 29.77 68.60 2.04 -2.27 16 24 C -0.02 0.03 9.08 22.52 0.20 0.23 16 25 C -0.11 0.50 5.39 30.59 0.16 0.67 16 26 C -0.10 0.08 4.49 30.59 0.14 0.22 16 27 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 28 H 0.06 0.07 8.13 -2.39 -0.02 0.05 16 29 H 0.13 -0.72 8.14 -2.39 -0.02 -0.74 16 30 H 0.09 -0.11 8.11 -2.39 -0.02 -0.13 16 31 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 34 H 0.41 -2.34 6.63 -92.70 -0.61 -2.95 16 35 H 0.07 -0.39 7.67 -2.39 -0.02 -0.40 16 36 H 0.07 -0.33 7.66 -2.38 -0.02 -0.35 16 37 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 38 H 0.16 -1.08 6.30 -2.91 -0.02 -1.10 16 39 H 0.16 -1.49 4.85 -2.91 -0.01 -1.50 16 40 H 0.11 -0.51 7.96 -2.39 -0.02 -0.53 16 41 H 0.40 -4.69 8.70 -74.06 -0.64 -5.34 16 42 H -0.30 -0.84 7.11 99.48 0.71 -0.13 16 43 H -0.28 0.30 7.11 99.48 0.71 1.01 16 44 H 0.15 -0.91 6.40 -2.91 -0.02 -0.93 16 45 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 46 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 47 H 0.08 -0.05 8.10 -2.39 -0.02 -0.07 16 48 H 0.06 0.19 8.10 -2.39 -0.02 0.17 16 Total: 0.00 -27.60 389.33 2.08 -25.52 By element: Atomic # 1 Polarization: -14.68 SS G_CDS: -0.22 Total: -14.90 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 4.93 Total: 14.14 kcal Atomic # 7 Polarization: -0.35 SS G_CDS: -2.24 Total: -2.59 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -2.43 Total: -19.89 kcal Atomic # 14 Polarization: -4.31 SS G_CDS: 2.04 Total: -2.27 kcal Total: -27.60 2.08 -25.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475160_12496546.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.721 kcal (2) G-P(sol) polarization free energy of solvation -27.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds