Wall clock time and date at job start Tue Mar 9 2021 13:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34223 * 117.00340 * 2 1 4 4 O 1.20832 * 119.99425 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00501 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.46742 * 299.99669 * 5 3 2 7 7 C 1.52999 * 109.47007 * 59.99682 * 5 3 2 8 8 C 1.53005 * 109.47221 * 180.02562 * 7 5 3 9 9 C 1.52999 * 109.46747 * 300.00064 * 8 7 5 10 10 H 1.08994 * 109.47198 * 299.99585 * 9 8 7 11 11 N 1.46502 * 109.47101 * 179.97438 * 9 8 7 12 12 C 1.34778 * 120.00304 * 154.99846 * 11 9 8 13 13 O 1.21282 * 119.99748 * 0.02562 * 12 11 9 14 14 C 1.50696 * 120.00421 * 180.02562 * 12 11 9 15 15 N 1.46498 * 109.47310 * 180.02562 * 14 12 11 16 16 C 1.35033 * 125.93040 * 124.71633 * 15 14 12 17 17 C 1.35082 * 107.98330 * 179.89396 * 16 15 14 18 18 C 1.50696 * 126.08318 * 180.14003 * 17 16 15 19 19 O 1.42897 * 109.47255 * 105.22960 * 18 17 16 20 20 Si 1.86305 * 109.46657 * 345.23188 * 18 17 16 21 21 C 1.40853 * 107.84372 * 0.36876 * 17 16 15 22 22 C 1.48415 * 126.03755 * 179.75465 * 21 17 16 23 23 C 1.39330 * 120.11730 * 316.94157 * 22 21 17 24 24 C 1.38021 * 119.87776 * 179.69911 * 23 22 21 25 25 C 1.38321 * 120.11978 * 0.57921 * 24 23 22 26 26 C 1.38323 * 120.24221 * 359.72231 * 25 24 23 27 27 C 1.38021 * 120.11861 * 359.97259 * 26 25 24 28 28 N 1.31618 * 107.92452 * 359.76646 * 21 17 16 29 29 C 1.52999 * 109.47312 * 59.99991 * 9 8 7 30 30 C 1.52994 * 109.47386 * 179.97438 * 5 3 2 31 31 H 1.09001 * 109.47291 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47687 * 300.00340 * 1 2 3 33 33 H 1.08999 * 109.46938 * 60.00848 * 1 2 3 34 34 H 1.08994 * 109.47218 * 299.99935 * 7 5 3 35 35 H 1.08994 * 109.47321 * 60.00361 * 7 5 3 36 36 H 1.09004 * 109.46890 * 59.99765 * 8 7 5 37 37 H 1.08992 * 109.47158 * 180.02562 * 8 7 5 38 38 H 0.97005 * 120.00296 * 335.00382 * 11 9 8 39 39 H 1.09003 * 109.47170 * 300.00648 * 14 12 11 40 40 H 1.09004 * 109.46694 * 59.99933 * 14 12 11 41 41 H 1.08007 * 126.00932 * 359.97438 * 16 15 14 42 42 H 1.09003 * 109.47298 * 225.23465 * 18 17 16 43 43 H 0.96706 * 113.99859 * 300.00497 * 19 18 17 44 44 H 1.48506 * 109.99724 * 179.97438 * 20 18 17 45 45 H 1.48504 * 109.99880 * 301.31548 * 20 18 17 46 46 H 1.08000 * 120.06333 * 359.97438 * 23 22 21 47 47 H 1.07999 * 119.94531 * 180.30018 * 24 23 22 48 48 H 1.08001 * 119.88145 * 179.69997 * 25 24 23 49 49 H 1.07996 * 119.94358 * 180.02562 * 26 25 24 50 50 H 1.07995 * 120.06284 * 180.02562 * 27 26 25 51 51 H 1.09002 * 109.47091 * 179.97438 * 29 9 8 52 52 H 1.09004 * 109.47380 * 59.99653 * 29 9 8 53 53 H 1.08996 * 109.47458 * 300.00296 * 30 5 3 54 54 H 1.09001 * 109.47045 * 59.99941 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9556 0.7809 0.8909 7 6 4.1138 0.5809 -1.2483 8 6 5.6418 0.6605 -1.2474 9 6 6.0761 2.1275 -1.2473 10 1 5.6871 2.6217 -2.1375 11 7 7.5391 2.2038 -1.2458 12 6 8.1576 3.2951 -1.7387 13 8 7.5029 4.2143 -2.1831 14 6 9.6625 3.3733 -1.7378 15 7 10.0856 4.6490 -2.3207 16 6 10.8903 5.5605 -1.7333 17 6 11.0441 6.5941 -2.5893 18 6 11.8655 7.8338 -2.3453 19 8 13.0721 7.7633 -3.1077 20 14 12.2819 7.9561 -0.5335 21 6 10.2960 6.3098 -3.7483 22 6 10.1769 7.1785 -4.9457 23 6 9.9919 8.5515 -4.7977 24 6 9.8881 9.3556 -5.9146 25 6 9.9553 8.7992 -7.1792 26 6 10.1325 7.4359 -7.3319 27 6 10.2439 6.6233 -6.2218 28 7 9.7209 5.1376 -3.5818 29 6 5.5285 2.8214 0.0016 30 6 4.0001 2.7420 -0.0002 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 3.8048 -0.4643 -1.2481 35 1 3.7245 1.0748 -2.1385 36 1 6.0308 0.1663 -0.3571 37 1 6.0318 0.1666 -2.1373 38 1 8.0628 1.4688 -0.8902 39 1 10.0294 3.3027 -0.7138 40 1 10.0694 2.5514 -2.3270 41 1 11.3340 5.4772 -0.7521 42 1 11.2957 8.7125 -2.6473 43 1 13.6303 7.0039 -2.8912 44 1 13.0925 9.1743 -0.2799 45 1 11.0353 7.9981 0.2724 46 1 9.9344 8.9864 -3.8108 47 1 9.7495 10.4207 -5.8012 48 1 9.8687 9.4314 -8.0506 49 1 10.1847 7.0066 -8.3215 50 1 10.3827 5.5591 -6.3421 51 1 5.8383 3.8665 0.0018 52 1 5.9175 2.3273 0.8919 53 1 3.6108 3.2355 -0.8906 54 1 3.6100 3.2366 0.8893 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475160_12622748.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:30:53 Heat of formation + Delta-G solvation = -48.736532 kcal Electronic energy + Delta-G solvation = -37221.059146 eV Core-core repulsion = 32319.019716 eV Total energy + Delta-G solvation = -4902.039430 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.188 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.48243 -41.87870 -40.91677 -39.83741 -39.03813 -37.67159 -37.57105 -35.39107 -34.76897 -32.41609 -32.10651 -31.90811 -31.53819 -31.11152 -28.90927 -28.22921 -26.06769 -24.93117 -23.96700 -23.85987 -23.47458 -22.08744 -21.71395 -21.50460 -21.08196 -20.78019 -18.78174 -18.68283 -18.37909 -17.89530 -17.71438 -17.49693 -17.37748 -16.94222 -16.49850 -16.30459 -16.16688 -15.78737 -15.65787 -15.43347 -15.23228 -15.15262 -15.00293 -14.89376 -14.45507 -14.37867 -14.30486 -14.16747 -14.01311 -13.95485 -13.71069 -13.59805 -13.33203 -13.25695 -13.04954 -12.73448 -12.48830 -12.43806 -12.39389 -12.22582 -12.16134 -11.89006 -11.87693 -11.72521 -11.65489 -11.47207 -11.40560 -11.18376 -10.60943 -10.22327 -10.12369 -9.92351 -9.77010 -9.31666 -5.02385 0.08677 0.41789 0.82402 1.05806 1.31884 1.41779 1.52125 1.63289 1.66775 1.75934 2.03386 2.11301 2.84784 3.34332 3.40781 3.57803 3.59919 3.64853 3.68374 3.74766 3.89368 3.93829 3.96737 4.02608 4.07189 4.16344 4.17330 4.18984 4.22643 4.24645 4.24963 4.28753 4.29914 4.38784 4.43441 4.50087 4.52989 4.59600 4.65859 4.76121 4.77209 4.83278 4.90570 4.95305 4.99448 5.05861 5.06644 5.07938 5.21916 5.26038 5.27317 5.32012 5.46859 5.51816 5.52819 5.58210 5.94917 5.99312 6.51958 6.60446 6.61594 6.91155 7.22616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.460 3.540 4 O -0.546 6.546 5 C -0.073 4.073 6 H 0.143 0.857 7 C -0.105 4.105 8 C -0.112 4.112 9 C 0.145 3.855 10 H 0.052 0.948 11 N -0.705 5.705 12 C 0.492 3.508 13 O -0.569 6.569 14 C 0.110 3.890 15 N -0.359 5.359 16 C 0.080 3.920 17 C -0.271 4.271 18 C -0.044 4.044 19 O -0.558 6.558 20 Si 0.804 3.196 21 C 0.105 3.895 22 C -0.025 4.025 23 C -0.110 4.110 24 C -0.126 4.126 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.110 4.110 28 N -0.293 5.293 29 C -0.117 4.117 30 C -0.100 4.100 31 H 0.132 0.868 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.053 0.947 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.424 0.576 39 H 0.184 0.816 40 H 0.145 0.855 41 H 0.230 0.770 42 H 0.091 0.909 43 H 0.391 0.609 44 H -0.301 1.301 45 H -0.286 1.286 46 H 0.122 0.878 47 H 0.144 0.856 48 H 0.148 0.852 49 H 0.145 0.855 50 H 0.120 0.880 51 H 0.045 0.955 52 H 0.098 0.902 53 H 0.046 0.954 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.718 -10.972 6.245 13.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.305 3.695 4 O -0.436 6.436 5 C -0.091 4.091 6 H 0.161 0.839 7 C -0.144 4.144 8 C -0.149 4.149 9 C 0.040 3.960 10 H 0.070 0.930 11 N -0.359 5.359 12 C 0.278 3.722 13 O -0.447 6.447 14 C -0.014 4.014 15 N -0.140 5.140 16 C -0.065 4.065 17 C -0.282 4.282 18 C -0.154 4.154 19 O -0.365 6.365 20 Si 0.708 3.292 21 C -0.060 4.060 22 C -0.027 4.027 23 C -0.130 4.130 24 C -0.143 4.143 25 C -0.137 4.137 26 C -0.142 4.142 27 C -0.129 4.129 28 N -0.115 5.115 29 C -0.155 4.155 30 C -0.138 4.138 31 H 0.150 0.850 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.072 0.928 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.263 0.737 39 H 0.201 0.799 40 H 0.163 0.837 41 H 0.246 0.754 42 H 0.108 0.892 43 H 0.241 0.759 44 H -0.228 1.228 45 H -0.213 1.213 46 H 0.140 0.860 47 H 0.162 0.838 48 H 0.165 0.835 49 H 0.162 0.838 50 H 0.138 0.862 51 H 0.064 0.936 52 H 0.117 0.883 53 H 0.065 0.935 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.903 -10.127 5.960 12.381 hybrid contribution -0.690 1.106 -0.348 1.349 sum 3.213 -9.020 5.612 11.099 Atomic orbital electron populations 1.23518 0.75214 1.05692 1.02220 1.86495 1.24564 1.32841 1.83523 1.24458 0.93189 0.81003 0.70888 1.90686 1.68289 1.37760 1.46853 1.21243 0.84933 0.98879 1.04066 0.83912 1.21488 0.96006 1.02047 0.94821 1.21748 0.94353 0.93348 1.05481 1.20943 0.79668 0.97703 0.97730 0.92994 1.45768 1.07141 1.20084 1.62929 1.21199 0.91244 0.82534 0.77234 1.90841 1.67872 1.39336 1.46639 1.22059 0.91230 0.83652 1.04437 1.48174 1.37074 1.16774 1.12008 1.22888 0.94989 0.88550 1.00099 1.20648 1.10305 1.01448 0.95834 1.24741 0.86105 0.94913 1.09615 1.86480 1.31997 1.52197 1.65829 0.94108 0.79425 0.84909 0.70726 1.20814 0.96879 0.93166 0.95155 1.17992 1.01731 0.92329 0.90632 1.21239 0.99797 0.92410 0.99529 1.21375 0.99861 1.00810 0.92298 1.21568 0.98658 0.95413 0.98093 1.21391 0.99633 0.94113 0.99102 1.21283 0.99717 1.00054 0.91827 1.77699 1.21752 1.12419 0.99591 1.21825 0.93739 1.00699 0.99259 1.21342 0.95989 0.94062 1.02455 0.84984 0.92182 0.92486 0.88133 0.92786 0.87408 0.89464 0.73719 0.79917 0.83717 0.75431 0.89194 0.75911 1.22841 1.21331 0.86050 0.83825 0.83474 0.83753 0.86238 0.93567 0.88339 0.93520 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.36 -0.72 10.47 -51.34 -0.54 -1.25 16 3 C 0.46 2.04 7.26 71.23 0.52 2.55 16 4 O -0.55 -6.82 15.73 21.95 0.35 -6.48 16 5 C -0.07 0.21 2.63 -11.54 -0.03 0.18 16 6 H 0.14 -1.25 8.14 -2.38 -0.02 -1.27 16 7 C -0.11 0.60 5.13 30.60 0.16 0.76 16 8 C -0.11 1.08 5.39 30.60 0.16 1.25 16 9 C 0.14 -0.50 2.45 44.99 0.11 -0.39 16 10 H 0.05 0.27 7.58 -2.39 -0.02 0.25 16 11 N -0.71 5.34 5.08 -442.54 -2.25 3.10 16 12 C 0.49 -0.02 7.82 87.66 0.69 0.67 16 13 O -0.57 -7.92 15.36 -3.03 -0.05 -7.96 16 14 C 0.11 -0.89 6.99 85.63 0.60 -0.29 16 15 N -0.36 -0.75 3.40 -351.92 -1.20 -1.95 16 16 C 0.08 -0.14 9.96 83.47 0.83 0.69 16 17 C -0.27 -1.31 5.35 -19.95 -0.11 -1.42 16 18 C -0.04 -0.13 2.52 71.23 0.18 0.05 16 19 O -0.56 -2.05 12.88 -148.98 -1.92 -3.97 16 20 Si 0.80 -2.15 30.74 68.60 2.11 -0.04 16 21 C 0.11 1.24 6.66 42.53 0.28 1.52 16 22 C -0.02 -0.32 5.74 -20.04 -0.11 -0.43 16 23 C -0.11 -1.17 8.88 22.48 0.20 -0.97 16 24 C -0.13 -0.91 10.03 22.24 0.22 -0.68 16 25 C -0.12 -0.69 10.04 22.31 0.22 -0.47 16 26 C -0.12 -0.88 10.03 22.24 0.22 -0.66 16 27 C -0.11 -1.20 9.78 22.48 0.22 -0.98 16 28 N -0.29 -3.60 11.67 -48.16 -0.56 -4.17 16 29 C -0.12 0.27 5.50 30.61 0.17 0.44 16 30 C -0.10 -0.12 4.50 30.61 0.14 0.02 16 31 H 0.13 -0.94 8.14 -2.39 -0.02 -0.96 16 32 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 33 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 34 H 0.10 -0.80 8.11 -2.39 -0.02 -0.82 16 35 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 36 H 0.11 -1.64 8.14 -2.38 -0.02 -1.66 16 37 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 38 H 0.42 -7.09 8.60 -92.70 -0.80 -7.88 16 39 H 0.18 -3.54 8.07 -2.39 -0.02 -3.56 16 40 H 0.15 -1.91 8.14 -2.38 -0.02 -1.93 16 41 H 0.23 -3.02 6.40 -2.91 -0.02 -3.03 16 42 H 0.09 0.58 5.57 -2.39 -0.01 0.57 16 43 H 0.39 -2.12 8.70 -74.05 -0.64 -2.77 16 44 H -0.30 -1.53 7.11 99.48 0.71 -0.83 16 45 H -0.29 -0.68 7.11 99.48 0.71 0.03 16 46 H 0.12 1.10 6.24 -2.91 -0.02 1.08 16 47 H 0.14 0.34 8.06 -2.91 -0.02 0.32 16 48 H 0.15 0.05 8.06 -2.91 -0.02 0.03 16 49 H 0.14 0.30 8.06 -2.91 -0.02 0.28 16 50 H 0.12 1.23 8.06 -2.91 -0.02 1.21 16 51 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 52 H 0.10 -0.78 8.14 -2.38 -0.02 -0.80 16 53 H 0.05 0.33 8.10 -2.39 -0.02 0.31 16 54 H 0.07 0.21 8.10 -2.39 -0.02 0.19 16 Total: 0.00 -43.19 445.86 1.35 -41.84 By element: Atomic # 1 Polarization: -21.66 SS G_CDS: -0.46 Total: -22.12 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 5.87 Total: 2.99 kcal Atomic # 7 Polarization: 0.99 SS G_CDS: -4.01 Total: -3.01 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -2.16 Total: -19.66 kcal Atomic # 14 Polarization: -2.15 SS G_CDS: 2.11 Total: -0.04 kcal Total: -43.19 1.35 -41.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475160_12622748.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.898 kcal (2) G-P(sol) polarization free energy of solvation -43.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds