Wall clock time and date at job start Tue Mar 9 2021 13:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 116.99906 * 2 1 4 4 O 1.20825 * 119.99737 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99795 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47484 * 59.99622 * 5 3 2 7 7 C 1.53000 * 109.47233 * 179.97438 * 5 3 2 8 8 C 1.52998 * 109.47368 * 179.97438 * 7 5 3 9 9 C 1.52998 * 109.46998 * 299.99653 * 8 7 5 10 10 H 1.08993 * 109.47469 * 299.99844 * 9 8 7 11 11 N 1.46500 * 109.46974 * 180.02562 * 9 8 7 12 12 C 1.34771 * 120.00176 * 155.00604 * 11 9 8 13 13 O 1.21620 * 119.99853 * 359.97438 * 12 11 9 14 14 C 1.47294 * 120.00031 * 180.02562 * 12 11 9 15 15 C 1.40378 * 120.04583 * 180.02562 * 14 12 11 16 16 O 1.35672 * 120.13533 * 359.97153 * 15 14 12 17 17 C 1.38316 * 119.72423 * 179.72041 * 15 14 12 18 18 C 1.39570 * 119.81440 * 0.50703 * 17 15 14 19 19 C 1.47560 * 119.95617 * 179.76596 * 18 17 15 20 20 C 1.36109 * 125.94617 * 179.72273 * 19 18 17 21 21 C 1.40795 * 106.73337 * 180.26570 * 20 19 18 22 22 C 1.34833 * 107.04981 * 359.56997 * 21 20 19 23 23 C 1.50704 * 125.65107 * 180.15919 * 22 21 20 24 24 O 1.42898 * 109.47221 * 65.29854 * 23 22 21 25 25 Si 1.86301 * 109.46886 * 185.29873 * 23 22 21 26 26 O 1.34226 * 108.69670 * 0.43348 * 22 21 20 27 27 C 1.39965 * 120.08429 * 359.48863 * 18 17 15 28 28 C 1.36385 * 120.28396 * 0.25407 * 27 18 17 29 29 C 1.52997 * 109.46850 * 60.00351 * 9 8 7 30 30 C 1.52998 * 109.47033 * 299.99627 * 29 9 8 31 31 H 1.09004 * 109.47121 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47008 * 300.00456 * 1 2 3 33 33 H 1.08997 * 109.46928 * 60.00628 * 1 2 3 34 34 H 1.09004 * 109.47373 * 59.99465 * 7 5 3 35 35 H 1.09006 * 109.46827 * 299.99935 * 7 5 3 36 36 H 1.09001 * 109.47234 * 179.97438 * 8 7 5 37 37 H 1.08999 * 109.47313 * 59.99945 * 8 7 5 38 38 H 0.97010 * 119.99922 * 334.99619 * 11 9 8 39 39 H 0.96702 * 113.99714 * 90.00481 * 16 15 14 40 40 H 1.08001 * 120.09266 * 180.26688 * 17 15 14 41 41 H 1.08002 * 126.62860 * 359.97438 * 20 19 18 42 42 H 1.08005 * 126.47526 * 179.74314 * 21 20 19 43 43 H 1.08999 * 109.46855 * 305.29506 * 23 22 21 44 44 H 0.96697 * 113.99755 * 60.00201 * 24 23 22 45 45 H 1.48500 * 110.00036 * 179.97438 * 25 23 22 46 46 H 1.48497 * 110.00030 * 301.31734 * 25 23 22 47 47 H 1.08003 * 119.85299 * 180.28163 * 27 18 17 48 48 H 1.07994 * 119.90891 * 179.97438 * 28 27 18 49 49 H 1.09004 * 109.47636 * 59.99991 * 29 9 8 50 50 H 1.09006 * 109.46899 * 179.97438 * 29 9 8 51 51 H 1.08999 * 109.47313 * 300.00171 * 30 29 9 52 52 H 1.09001 * 109.47395 * 180.02562 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.0001 2.7421 -0.0011 8 6 5.5280 2.8221 -0.0011 9 6 6.0749 2.1291 1.2485 10 1 5.6852 2.6236 2.1382 11 7 7.5379 2.2063 1.2489 12 6 8.2159 2.1405 2.4117 13 8 7.6132 2.0174 3.4609 14 6 9.6868 2.2187 2.4121 15 6 10.3940 2.1496 3.6228 16 8 9.7255 2.0113 4.7952 17 6 11.7755 2.2179 3.6149 18 6 12.4561 2.3655 2.4053 19 6 13.9295 2.4439 2.3937 20 6 14.7137 2.5819 1.2898 21 6 16.0474 2.6061 1.7404 22 6 16.0130 2.4928 3.0835 23 6 17.2134 2.4760 3.9946 24 8 17.8723 3.7427 3.9377 25 14 16.6618 2.1407 5.7422 26 8 14.7329 2.3914 3.4741 27 6 11.7430 2.4335 1.2028 28 6 10.3811 2.3613 1.2058 29 6 5.6412 0.6619 1.2490 30 6 4.1133 0.5818 1.2490 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 3.6107 3.2365 0.8889 35 1 3.6100 3.2359 -0.8911 36 1 5.8371 3.8674 -0.0019 37 1 5.9178 2.3277 -0.8908 38 1 8.0186 2.3047 0.4120 39 1 9.5781 1.0924 5.0579 40 1 12.3258 2.1610 4.5424 41 1 14.3779 2.6536 0.2658 42 1 16.9309 2.7007 1.1264 43 1 17.9015 1.6937 3.6743 44 1 17.3180 4.4869 4.2098 45 1 17.8364 2.1210 6.6505 46 1 15.6985 3.1828 6.1795 47 1 12.2737 2.5432 0.2686 48 1 9.8370 2.4148 0.2744 49 1 6.0310 0.1674 0.3592 50 1 6.0312 0.1680 2.1390 51 1 3.7235 1.0763 2.1387 52 1 3.8042 -0.4634 1.2498 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475160_12807986.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:31:06 Heat of formation + Delta-G solvation = -151.582341 kcal Electronic energy + Delta-G solvation = -36806.137552 eV Core-core repulsion = 31704.201069 eV Total energy + Delta-G solvation = -5101.936483 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.165 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.73294 -41.89408 -41.51510 -40.11959 -38.79223 -38.19639 -37.86016 -37.52195 -35.37099 -34.23653 -33.49389 -31.87840 -31.49320 -31.10613 -30.23915 -28.54210 -27.04206 -25.11377 -24.12376 -23.98141 -23.80054 -22.47806 -22.05623 -21.72586 -21.31169 -20.87396 -19.72698 -18.83937 -18.62106 -18.53908 -17.84988 -17.68543 -17.53569 -17.48416 -17.36608 -16.63591 -16.38224 -16.22003 -16.00738 -15.82023 -15.63356 -15.22009 -15.09102 -14.91721 -14.72763 -14.43950 -14.32554 -14.23523 -13.96710 -13.92550 -13.79045 -13.70742 -13.58318 -13.44474 -13.27809 -13.00527 -12.96056 -12.70902 -12.64399 -12.37863 -12.19885 -12.17693 -11.87133 -11.84808 -11.55986 -11.46151 -11.33082 -11.11974 -10.85777 -10.83862 -10.61312 -10.07795 -9.93272 -9.00094 -4.99963 -0.77140 0.16782 0.65815 1.09870 1.12543 1.44306 1.45995 1.70153 1.71292 1.88208 1.95622 2.07397 2.67092 3.03664 3.21507 3.37344 3.49283 3.55987 3.62533 3.67026 3.76173 3.88210 3.94879 4.00645 4.02788 4.09887 4.19266 4.24937 4.27580 4.28694 4.32193 4.34701 4.38620 4.44834 4.45090 4.62505 4.66137 4.68460 4.72399 4.80114 4.81223 4.90222 4.95803 5.05893 5.08164 5.10720 5.12021 5.13355 5.23422 5.27490 5.31104 5.36329 5.44605 5.50443 5.56627 5.97003 6.30888 6.53030 6.65485 6.71966 7.22171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.461 3.539 4 O -0.542 6.542 5 C -0.074 4.074 6 H 0.141 0.859 7 C -0.100 4.100 8 C -0.114 4.114 9 C 0.143 3.857 10 H 0.061 0.939 11 N -0.707 5.707 12 C 0.556 3.444 13 O -0.564 6.564 14 C -0.178 4.178 15 C 0.159 3.841 16 O -0.496 6.496 17 C -0.154 4.154 18 C 0.024 3.976 19 C 0.005 3.995 20 C -0.172 4.172 21 C -0.181 4.181 22 C -0.052 4.052 23 C -0.032 4.032 24 O -0.534 6.534 25 Si 0.763 3.237 26 O -0.177 6.177 27 C -0.110 4.110 28 C -0.050 4.050 29 C -0.119 4.119 30 C -0.103 4.103 31 H 0.129 0.871 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.416 0.584 39 H 0.408 0.592 40 H 0.136 0.864 41 H 0.183 0.817 42 H 0.167 0.833 43 H 0.158 0.842 44 H 0.389 0.611 45 H -0.280 1.280 46 H -0.299 1.299 47 H 0.170 0.830 48 H 0.175 0.825 49 H 0.094 0.906 50 H 0.056 0.944 51 H 0.054 0.946 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 -5.334 -8.234 10.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.305 3.695 4 O -0.431 6.431 5 C -0.093 4.093 6 H 0.158 0.842 7 C -0.138 4.138 8 C -0.152 4.152 9 C 0.038 3.962 10 H 0.079 0.921 11 N -0.360 5.360 12 C 0.344 3.656 13 O -0.443 6.443 14 C -0.182 4.182 15 C 0.112 3.888 16 O -0.310 6.310 17 C -0.173 4.173 18 C 0.024 3.976 19 C -0.044 4.044 20 C -0.190 4.190 21 C -0.200 4.200 22 C -0.102 4.102 23 C -0.142 4.142 24 O -0.343 6.343 25 Si 0.667 3.333 26 O -0.075 6.075 27 C -0.127 4.127 28 C -0.068 4.068 29 C -0.157 4.157 30 C -0.142 4.142 31 H 0.147 0.853 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.255 0.745 39 H 0.268 0.732 40 H 0.154 0.846 41 H 0.200 0.800 42 H 0.185 0.815 43 H 0.175 0.825 44 H 0.239 0.761 45 H -0.207 1.207 46 H -0.226 1.226 47 H 0.188 0.812 48 H 0.192 0.808 49 H 0.113 0.887 50 H 0.075 0.925 51 H 0.073 0.927 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.366 -4.641 -6.573 8.387 hybrid contribution -0.271 1.054 0.010 1.089 sum 2.095 -3.587 -6.563 7.767 Atomic orbital electron populations 1.23511 0.75209 1.05580 1.02319 1.86508 1.24613 1.33155 1.83556 1.24429 0.93141 0.80965 0.70924 1.90674 1.68199 1.37505 1.46751 1.21259 0.84913 0.99789 1.03299 0.84180 1.21365 0.95746 0.93270 1.03415 1.21749 0.93937 1.02079 0.97397 1.21021 0.79047 0.96520 0.99583 0.92094 1.45807 1.07244 1.74051 1.08882 1.18224 0.87179 0.76195 0.83978 1.90828 1.70599 1.50217 1.32660 1.20547 0.93139 1.09832 0.94682 1.18512 0.89324 0.95850 0.85065 1.84734 1.76896 1.33404 1.35927 1.21565 0.93114 1.03649 0.98961 1.17963 0.86926 0.98540 0.94211 1.20605 0.90261 1.08655 0.84928 1.22248 0.92024 1.04561 1.00201 1.21842 0.98980 1.05360 0.93794 1.23149 0.83312 1.07715 0.96050 1.24455 0.91396 0.89869 1.08486 1.86637 1.42029 1.16410 1.89196 0.93672 0.77828 0.89357 0.72423 1.83937 1.16573 1.71408 1.35612 1.21066 0.93921 1.00240 0.97499 1.21191 0.94046 0.94521 0.97055 1.21836 0.94396 0.96003 1.03474 1.21434 0.95702 1.01645 0.95370 0.85289 0.92411 0.91965 0.92652 0.90168 0.89942 0.87841 0.74538 0.73150 0.84635 0.79978 0.81532 0.82452 0.76080 1.20676 1.22551 0.81248 0.80761 0.88723 0.92529 0.92750 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.17 16 2 O -0.36 -0.92 10.47 -51.44 -0.54 -1.45 16 3 C 0.46 1.79 7.25 71.23 0.52 2.31 16 4 O -0.54 -5.81 15.73 21.97 0.35 -5.47 16 5 C -0.07 0.23 2.63 -11.54 -0.03 0.20 16 6 H 0.14 -1.20 8.14 -2.39 -0.02 -1.22 16 7 C -0.10 0.28 4.49 30.59 0.14 0.42 16 8 C -0.11 0.84 5.39 30.59 0.16 1.01 16 9 C 0.14 -0.39 2.45 44.99 0.11 -0.28 16 10 H 0.06 0.26 7.57 -2.39 -0.02 0.24 16 11 N -0.71 2.85 5.03 -445.95 -2.24 0.61 16 12 C 0.56 2.14 7.72 86.63 0.67 2.81 16 13 O -0.56 -7.29 14.80 16.90 0.25 -7.04 16 14 C -0.18 -0.18 5.89 -19.97 -0.12 -0.30 16 15 C 0.16 0.72 6.71 22.81 0.15 0.87 16 16 O -0.50 -3.67 11.56 -68.90 -0.80 -4.47 16 17 C -0.15 -0.43 9.65 22.61 0.22 -0.21 16 18 C 0.02 -0.01 5.87 -20.08 -0.12 -0.12 16 19 C 0.00 0.00 7.02 24.24 0.17 0.17 16 20 C -0.17 0.41 10.26 22.40 0.23 0.64 16 21 C -0.18 0.18 10.78 22.11 0.24 0.42 16 22 C -0.05 -0.02 6.21 24.90 0.15 0.13 16 23 C -0.03 0.06 2.98 71.24 0.21 0.27 16 24 O -0.53 -0.33 12.88 -148.98 -1.92 -2.25 16 25 Si 0.76 -0.58 32.11 68.60 2.20 1.62 16 26 O -0.18 -0.51 8.79 -6.03 -0.05 -0.57 16 27 C -0.11 0.68 9.48 22.26 0.21 0.89 16 28 C -0.05 0.33 9.47 22.24 0.21 0.54 16 29 C -0.12 0.44 5.50 30.59 0.17 0.61 16 30 C -0.10 0.27 5.13 30.59 0.16 0.43 16 31 H 0.13 -0.84 8.14 -2.39 -0.02 -0.86 16 32 H 0.06 0.03 8.13 -2.38 -0.02 0.01 16 33 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 34 H 0.05 0.10 8.10 -2.38 -0.02 0.08 16 35 H 0.08 -0.19 8.10 -2.38 -0.02 -0.21 16 36 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 37 H 0.10 -1.31 8.14 -2.39 -0.02 -1.33 16 38 H 0.42 -4.81 6.61 -92.70 -0.61 -5.42 16 39 H 0.41 0.03 9.06 -74.06 -0.67 -0.64 16 40 H 0.14 0.42 7.90 -2.91 -0.02 0.40 16 41 H 0.18 -1.59 7.24 -2.91 -0.02 -1.61 16 42 H 0.17 -0.63 8.06 -2.91 -0.02 -0.65 16 43 H 0.16 -0.94 7.96 -2.39 -0.02 -0.96 16 44 H 0.39 -1.55 8.70 -74.06 -0.64 -2.20 16 45 H -0.28 -1.28 7.11 99.48 0.71 -0.57 16 46 H -0.30 -1.90 7.11 99.48 0.71 -1.19 16 47 H 0.17 -2.13 6.95 -2.91 -0.02 -2.15 16 48 H 0.18 -2.63 6.38 -2.91 -0.02 -2.65 16 49 H 0.09 -0.78 8.14 -2.38 -0.02 -0.80 16 50 H 0.06 0.06 8.14 -2.38 -0.02 0.04 16 51 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 52 H 0.09 -0.31 8.11 -2.39 -0.02 -0.33 16 Total: 0.00 -30.70 435.02 1.01 -29.68 By element: Atomic # 1 Polarization: -21.76 SS G_CDS: -0.89 Total: -22.65 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 4.65 Total: 11.98 kcal Atomic # 7 Polarization: 2.85 SS G_CDS: -2.24 Total: 0.61 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -2.71 Total: -21.25 kcal Atomic # 14 Polarization: -0.58 SS G_CDS: 2.20 Total: 1.62 kcal Total: -30.70 1.01 -29.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475160_12807986.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.900 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds