Wall clock time and date at job start Tue Mar 9 2021 13:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34235 * 116.99703 * 2 1 4 4 O 1.20822 * 120.00349 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99740 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.47518 * 59.99424 * 5 3 2 7 7 C 1.53000 * 109.46931 * 179.97438 * 5 3 2 8 8 C 1.53006 * 109.46809 * 180.02562 * 7 5 3 9 9 C 1.53000 * 109.47093 * 299.99699 * 8 7 5 10 10 H 1.09003 * 109.47500 * 300.00461 * 9 8 7 11 11 N 1.46490 * 109.47228 * 180.02562 * 9 8 7 12 12 C 1.34785 * 120.00304 * 155.00456 * 11 9 8 13 13 O 1.21572 * 119.99726 * 359.97438 * 12 11 9 14 14 C 1.47718 * 119.99902 * 180.02562 * 12 11 9 15 15 C 1.39715 * 120.01905 * 179.97438 * 14 12 11 16 16 C 1.37668 * 119.96887 * 179.97438 * 15 14 12 17 17 C 1.39502 * 120.02825 * 0.02562 * 16 15 14 18 18 C 1.48276 * 119.97145 * 179.97438 * 17 16 15 19 19 C 1.39408 * 120.12028 * 179.70113 * 18 17 16 20 20 C 1.38003 * 119.86782 * 179.71672 * 19 18 17 21 21 C 1.38340 * 120.12796 * 0.55610 * 20 19 18 22 22 C 1.50692 * 119.87367 * 179.74356 * 21 20 19 23 23 O 1.42900 * 109.47363 * 244.97525 * 22 21 20 24 24 Si 1.86295 * 109.47257 * 4.97681 * 22 21 20 25 25 C 1.38336 * 120.25527 * 359.71937 * 21 20 19 26 26 C 1.38006 * 120.12827 * 359.97438 * 25 21 20 27 27 C 1.39496 * 120.04908 * 359.95168 * 17 16 15 28 28 C 1.37664 * 120.02543 * 0.04718 * 27 17 16 29 29 C 1.53003 * 109.47064 * 60.00071 * 9 8 7 30 30 C 1.52997 * 109.47095 * 300.00123 * 29 9 8 31 31 H 1.09000 * 109.47131 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47231 * 300.00404 * 1 2 3 33 33 H 1.09004 * 109.46995 * 60.00529 * 1 2 3 34 34 H 1.08997 * 109.47264 * 60.00313 * 7 5 3 35 35 H 1.09001 * 109.47200 * 299.99265 * 7 5 3 36 36 H 1.09003 * 109.46810 * 180.02562 * 8 7 5 37 37 H 1.08992 * 109.47350 * 59.99837 * 8 7 5 38 38 H 0.97006 * 120.00449 * 334.99590 * 11 9 8 39 39 H 1.07996 * 120.01332 * 359.69715 * 15 14 12 40 40 H 1.08001 * 119.97898 * 179.97438 * 16 15 14 41 41 H 1.07996 * 120.06998 * 359.97438 * 19 18 17 42 42 H 1.07999 * 119.93965 * 180.25287 * 20 19 18 43 43 H 1.08999 * 109.47418 * 124.97624 * 22 21 20 44 44 H 0.96711 * 113.99678 * 59.99548 * 23 22 21 45 45 H 1.48495 * 110.00120 * 58.68134 * 24 22 21 46 46 H 1.48500 * 110.00181 * 180.02562 * 24 22 21 47 47 H 1.07998 * 119.93778 * 179.97438 * 25 21 20 48 48 H 1.07992 * 120.06691 * 180.02562 * 26 25 21 49 49 H 1.07999 * 119.99336 * 180.02562 * 27 17 16 50 50 H 1.08003 * 120.01279 * 179.97438 * 28 27 17 51 51 H 1.08998 * 109.46677 * 60.00349 * 29 9 8 52 52 H 1.08999 * 109.47065 * 179.97438 * 29 9 8 53 53 H 1.09003 * 109.47165 * 299.99423 * 30 29 9 54 54 H 1.09005 * 109.46951 * 180.02562 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9558 0.7809 -0.8908 7 6 4.0000 2.7422 -0.0011 8 6 5.5280 2.8222 -0.0023 9 6 6.0760 2.1289 1.2466 10 1 5.6870 2.6231 2.1369 11 7 7.5389 2.2060 1.2457 12 6 8.2180 2.1399 2.4081 13 8 7.6164 2.0166 3.4574 14 6 9.6931 2.2182 2.4072 15 6 10.3974 2.1502 3.6119 16 6 11.7722 2.2229 3.6098 17 6 12.4619 2.3648 2.4056 18 6 13.9426 2.4435 2.4049 19 6 14.6353 2.5791 1.2027 20 6 16.0131 2.6577 1.2086 21 6 16.7074 2.5906 2.4033 22 6 18.2121 2.6713 2.4025 23 8 18.7558 1.4329 2.8640 24 14 18.8151 3.0077 0.6722 25 6 16.0256 2.4503 3.5987 26 6 14.6475 2.3770 3.6057 27 6 11.7597 2.4324 1.2022 28 6 10.3850 2.3599 1.2018 29 6 5.6422 0.6616 1.2472 30 6 4.1143 0.5816 1.2483 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8901 34 1 3.6107 3.2365 0.8889 35 1 3.6101 3.2360 -0.8911 36 1 5.8370 3.8675 -0.0023 37 1 5.9170 2.3280 -0.8925 38 1 8.0190 2.3046 0.4086 39 1 9.8634 2.0452 4.5447 40 1 12.3168 2.1707 4.5410 41 1 14.0947 2.6268 0.2690 42 1 16.5507 2.7669 0.2783 43 1 18.5332 3.4773 3.0622 44 1 18.5106 0.6698 2.3230 45 1 18.2316 4.2770 0.1688 46 1 20.2978 3.0889 0.6578 47 1 16.5727 2.3981 4.5284 48 1 14.1162 2.2679 4.5395 49 1 12.2946 2.5419 0.2704 50 1 9.8415 2.4127 0.2700 51 1 6.0313 0.1674 0.3570 52 1 6.0330 0.1676 2.1367 53 1 3.7253 1.0758 2.1386 54 1 3.8053 -0.4637 1.2492 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475160_13158362.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:31:18 Heat of formation + Delta-G solvation = -104.664234 kcal Electronic energy + Delta-G solvation = -35005.125683 eV Core-core repulsion = 30258.824346 eV Total energy + Delta-G solvation = -4746.301337 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.182 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.88304 -41.43002 -40.75525 -39.57488 -38.78038 -37.56150 -37.47719 -35.46941 -34.01896 -32.59461 -31.93157 -31.78312 -31.34289 -30.39060 -28.54570 -26.99188 -25.15456 -24.62399 -24.00364 -23.82769 -22.57592 -22.33846 -21.82091 -21.32460 -20.81878 -19.23203 -18.64092 -18.44064 -17.86288 -17.67591 -17.49494 -17.39522 -16.78508 -16.39630 -16.21209 -16.11290 -15.79673 -15.41410 -15.32830 -15.19321 -15.17726 -14.95264 -14.90305 -14.73042 -14.34574 -14.27768 -14.22539 -14.06025 -13.90026 -13.68898 -13.57612 -13.30247 -13.15940 -13.00825 -12.73475 -12.66564 -12.54571 -12.37644 -12.19021 -12.08746 -11.93243 -11.85627 -11.59057 -11.57368 -11.47836 -11.36807 -11.01557 -10.75033 -10.40352 -10.12284 -10.04050 -9.94843 -9.05817 -4.99766 -0.67143 0.37195 0.41432 0.51781 1.09277 1.31797 1.64520 1.70749 1.81511 1.98088 2.06989 2.62548 3.03026 3.41282 3.48570 3.53623 3.58186 3.63039 3.67201 3.74290 3.81472 3.90605 3.92793 4.02978 4.07480 4.08959 4.18603 4.26747 4.27543 4.28146 4.30619 4.31644 4.34008 4.38620 4.43425 4.47823 4.61108 4.66279 4.67982 4.70040 4.78643 4.90223 4.92250 4.94790 5.04693 5.08797 5.10147 5.10844 5.14822 5.22372 5.24726 5.28313 5.30978 5.35516 5.42392 5.48497 5.51180 5.67218 5.82047 5.94314 6.49729 6.64979 6.76643 7.16837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.461 3.539 4 O -0.541 6.541 5 C -0.074 4.074 6 H 0.140 0.860 7 C -0.099 4.099 8 C -0.113 4.113 9 C 0.141 3.859 10 H 0.063 0.937 11 N -0.706 5.706 12 C 0.556 3.444 13 O -0.582 6.582 14 C -0.151 4.151 15 C -0.073 4.073 16 C -0.126 4.126 17 C -0.023 4.023 18 C -0.060 4.060 19 C -0.100 4.100 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.078 4.078 23 O -0.557 6.557 24 Si 0.779 3.221 25 C -0.105 4.105 26 C -0.115 4.115 27 C -0.117 4.117 28 C -0.072 4.072 29 C -0.120 4.120 30 C -0.103 4.103 31 H 0.129 0.871 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.417 0.583 39 H 0.123 0.877 40 H 0.140 0.860 41 H 0.158 0.842 42 H 0.151 0.849 43 H 0.103 0.897 44 H 0.395 0.605 45 H -0.283 1.283 46 H -0.303 1.303 47 H 0.125 0.875 48 H 0.135 0.865 49 H 0.163 0.837 50 H 0.163 0.837 51 H 0.094 0.906 52 H 0.054 0.946 53 H 0.055 0.945 54 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.095 -3.469 -8.601 9.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.306 3.694 4 O -0.431 6.431 5 C -0.093 4.093 6 H 0.158 0.842 7 C -0.138 4.138 8 C -0.151 4.151 9 C 0.037 3.963 10 H 0.081 0.919 11 N -0.357 5.357 12 C 0.345 3.655 13 O -0.463 6.463 14 C -0.155 4.155 15 C -0.092 4.092 16 C -0.144 4.144 17 C -0.024 4.024 18 C -0.060 4.060 19 C -0.118 4.118 20 C -0.134 4.134 21 C -0.120 4.120 22 C -0.188 4.188 23 O -0.365 6.365 24 Si 0.686 3.314 25 C -0.123 4.123 26 C -0.132 4.132 27 C -0.134 4.134 28 C -0.090 4.090 29 C -0.159 4.159 30 C -0.141 4.141 31 H 0.147 0.853 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.255 0.745 39 H 0.141 0.859 40 H 0.158 0.842 41 H 0.176 0.824 42 H 0.168 0.832 43 H 0.121 0.879 44 H 0.245 0.755 45 H -0.210 1.210 46 H -0.232 1.232 47 H 0.143 0.857 48 H 0.153 0.847 49 H 0.180 0.820 50 H 0.180 0.820 51 H 0.112 0.888 52 H 0.073 0.927 53 H 0.073 0.927 54 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.089 -2.346 -7.944 8.543 hybrid contribution -0.467 0.517 1.137 1.334 sum 1.622 -1.830 -6.807 7.233 Atomic orbital electron populations 1.23513 0.75186 1.05577 1.02343 1.86510 1.24636 1.33158 1.83555 1.24405 0.93100 0.80974 0.70941 1.90672 1.68183 1.37470 1.46730 1.21256 0.84968 0.99826 1.03229 0.84235 1.21365 0.95662 0.93226 1.03505 1.21750 0.93994 1.02095 0.97273 1.21057 0.79024 0.96501 0.99760 0.91898 1.45821 1.07319 1.73619 1.08979 1.18564 0.87734 0.75444 0.83764 1.90780 1.71038 1.51402 1.33077 1.20006 0.92073 1.07837 0.95535 1.21231 0.94193 0.95903 0.97891 1.21344 0.93509 1.00837 0.98726 1.19147 0.91960 0.97311 0.93958 1.18945 0.91525 1.01357 0.94145 1.21527 0.93977 0.98034 0.98213 1.21179 0.94648 1.00263 0.97322 1.20535 0.96175 1.01186 0.94089 1.25242 0.91299 0.89995 1.12259 1.86480 1.74646 1.17178 1.58176 0.93750 0.76392 0.84601 0.76705 1.21065 0.93967 0.99026 0.98283 1.21490 0.94204 0.99242 0.98295 1.21514 0.93903 0.99666 0.98349 1.21519 0.94551 0.95800 0.97155 1.21844 0.94553 0.96084 1.03373 1.21430 0.95540 1.01676 0.95476 0.85317 0.92375 0.91941 0.92528 0.90081 0.89801 0.87933 0.74463 0.85851 0.84220 0.82422 0.83200 0.87936 0.75463 1.21016 1.23151 0.85668 0.84734 0.81951 0.81956 0.88796 0.92739 0.92653 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.36 -0.98 10.47 -51.46 -0.54 -1.52 16 3 C 0.46 1.84 7.26 71.24 0.52 2.36 16 4 O -0.54 -5.79 15.73 21.98 0.35 -5.44 16 5 C -0.07 0.21 2.63 -11.54 -0.03 0.18 16 6 H 0.14 -1.14 8.14 -2.39 -0.02 -1.16 16 7 C -0.10 0.27 4.49 30.60 0.14 0.41 16 8 C -0.11 0.81 5.39 30.60 0.16 0.98 16 9 C 0.14 -0.31 2.45 44.99 0.11 -0.20 16 10 H 0.06 0.28 7.58 -2.39 -0.02 0.26 16 11 N -0.71 2.25 5.03 -445.52 -2.24 0.01 16 12 C 0.56 2.55 7.73 86.75 0.67 3.22 16 13 O -0.58 -8.10 16.00 -3.94 -0.06 -8.17 16 14 C -0.15 -0.23 5.88 -20.06 -0.12 -0.35 16 15 C -0.07 -0.27 9.58 22.49 0.22 -0.05 16 16 C -0.13 -0.10 9.41 22.44 0.21 0.11 16 17 C -0.02 0.03 5.88 -20.00 -0.12 -0.09 16 18 C -0.06 0.08 5.88 -20.04 -0.12 -0.04 16 19 C -0.10 0.46 9.43 22.50 0.21 0.67 16 20 C -0.12 0.51 8.65 22.24 0.19 0.70 16 21 C -0.12 0.16 5.36 -19.82 -0.11 0.05 16 22 C -0.08 0.11 2.80 71.23 0.20 0.31 16 23 O -0.56 0.15 12.83 -148.98 -1.91 -1.76 16 24 Si 0.78 -2.81 29.79 68.60 2.04 -0.77 16 25 C -0.11 -0.04 9.67 22.24 0.21 0.17 16 26 C -0.11 0.02 9.43 22.49 0.21 0.24 16 27 C -0.12 0.62 9.41 22.44 0.21 0.84 16 28 C -0.07 0.38 9.52 22.49 0.21 0.60 16 29 C -0.12 0.33 5.50 30.59 0.17 0.50 16 30 C -0.10 0.22 5.14 30.59 0.16 0.38 16 31 H 0.13 -0.82 8.14 -2.39 -0.02 -0.84 16 32 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 33 H 0.06 -0.02 8.13 -2.38 -0.02 -0.04 16 34 H 0.06 0.10 8.10 -2.39 -0.02 0.08 16 35 H 0.08 -0.19 8.10 -2.39 -0.02 -0.21 16 36 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 37 H 0.10 -1.25 8.14 -2.39 -0.02 -1.27 16 38 H 0.42 -4.37 6.62 -92.70 -0.61 -4.98 16 39 H 0.12 0.72 7.64 -2.91 -0.02 0.70 16 40 H 0.14 -0.25 6.19 -2.91 -0.02 -0.27 16 41 H 0.16 -1.67 6.19 -2.91 -0.02 -1.68 16 42 H 0.15 -1.37 4.89 -2.91 -0.01 -1.38 16 43 H 0.10 0.04 7.96 -2.39 -0.02 0.02 16 44 H 0.40 -3.36 8.70 -74.05 -0.64 -4.01 16 45 H -0.28 -0.21 7.11 99.48 0.71 0.49 16 46 H -0.30 -1.39 7.11 99.48 0.71 -0.68 16 47 H 0.13 0.03 8.06 -2.91 -0.02 0.01 16 48 H 0.13 -0.33 6.19 -2.91 -0.02 -0.34 16 49 H 0.16 -1.87 6.19 -2.91 -0.02 -1.89 16 50 H 0.16 -2.11 6.39 -2.91 -0.02 -2.13 16 51 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 52 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 53 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 54 H 0.09 -0.26 8.12 -2.38 -0.02 -0.28 16 Total: 0.00 -28.12 436.25 1.89 -26.23 By element: Atomic # 1 Polarization: -20.50 SS G_CDS: -0.26 Total: -20.77 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 4.52 Total: 12.17 kcal Atomic # 7 Polarization: 2.25 SS G_CDS: -2.24 Total: 0.01 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -2.17 Total: -16.88 kcal Atomic # 14 Polarization: -2.81 SS G_CDS: 2.04 Total: -0.77 kcal Total: -28.12 1.89 -26.23 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475160_13158362.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.432 kcal (2) G-P(sol) polarization free energy of solvation -28.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds