Wall clock time and date at job start Tue Mar 9 2021 12:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34232 * 116.99878 * 2 1 4 4 O 1.20825 * 120.00049 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99727 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.47646 * 60.00176 * 5 3 2 7 7 C 1.53009 * 109.47097 * 180.02562 * 5 3 2 8 8 C 1.52997 * 109.47123 * 179.97438 * 7 5 3 9 9 C 1.52997 * 109.47264 * 300.00205 * 8 7 5 10 10 H 1.09002 * 109.46856 * 299.99475 * 9 8 7 11 11 N 1.46502 * 109.46789 * 180.02562 * 9 8 7 12 12 C 1.34783 * 119.99925 * 154.99837 * 11 9 8 13 13 O 1.21283 * 119.99560 * 359.97438 * 12 11 9 14 14 C 1.50695 * 119.99929 * 179.97438 * 12 11 9 15 15 C 1.50698 * 109.47281 * 179.97438 * 14 12 11 16 16 C 1.34854 * 125.88944 * 85.02336 * 15 14 12 17 17 C 1.40892 * 107.41896 * 180.02562 * 16 15 14 18 18 C 1.34857 * 107.41490 * 0.02562 * 17 16 15 19 19 C 1.50698 * 125.88659 * 180.02562 * 18 17 16 20 20 O 1.42903 * 109.47201 * 119.97511 * 19 18 17 21 21 Si 1.86295 * 109.47539 * 359.97065 * 19 18 17 22 22 N 1.36338 * 125.89289 * 264.72432 * 15 14 12 23 23 C 1.52996 * 109.47342 * 60.00079 * 9 8 7 24 24 C 1.52997 * 109.46880 * 299.99761 * 23 9 8 25 25 H 1.09001 * 109.47157 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47122 * 299.99817 * 1 2 3 27 27 H 1.09000 * 109.47070 * 59.99842 * 1 2 3 28 28 H 1.08995 * 109.46886 * 300.00093 * 7 5 3 29 29 H 1.09001 * 109.46838 * 59.99548 * 7 5 3 30 30 H 1.08997 * 109.46864 * 60.00221 * 8 7 5 31 31 H 1.08995 * 109.46777 * 179.97438 * 8 7 5 32 32 H 0.97001 * 120.00133 * 334.99011 * 11 9 8 33 33 H 1.09002 * 109.47138 * 300.00160 * 14 12 11 34 34 H 1.09000 * 109.46962 * 60.00513 * 14 12 11 35 35 H 1.07998 * 126.29041 * 359.97438 * 16 15 14 36 36 H 1.07995 * 126.29078 * 180.02562 * 17 16 15 37 37 H 1.09001 * 109.46687 * 239.96886 * 19 18 17 38 38 H 0.96700 * 114.00021 * 299.99422 * 20 19 18 39 39 H 1.48497 * 109.99928 * 180.02562 * 21 19 18 40 40 H 1.48502 * 109.99856 * 301.32167 * 21 19 18 41 41 H 0.97004 * 125.63782 * 359.97438 * 22 15 14 42 42 H 1.08997 * 109.47192 * 59.99735 * 23 9 8 43 43 H 1.09003 * 109.46861 * 180.02562 * 23 9 8 44 44 H 1.09001 * 109.47677 * 299.99994 * 24 23 9 45 45 H 1.09008 * 109.47127 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9558 0.7810 -0.8908 7 6 4.0002 2.7421 0.0002 8 6 5.5281 2.8222 0.0002 9 6 6.0751 2.1279 1.2491 10 1 5.6854 2.6217 2.1393 11 7 7.5381 2.2052 1.2493 12 6 8.2163 2.1383 2.4122 13 8 7.6153 2.0147 3.4583 14 6 9.7211 2.2172 2.4124 15 6 10.2291 2.1198 3.8278 16 6 10.4632 0.9785 4.5070 17 6 10.9263 1.3376 5.7882 18 6 10.9570 2.6846 5.8435 19 6 11.3895 3.5106 7.0274 20 8 12.5035 4.3259 6.6581 21 14 11.8822 2.3820 8.4253 22 7 10.5366 3.1702 4.6407 23 6 5.6413 0.6607 1.2483 24 6 4.1135 0.5807 1.2483 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.6101 3.2368 -0.8893 29 1 3.6108 3.2357 0.8906 30 1 5.9177 2.3286 -0.8900 31 1 5.8371 3.8674 0.0003 32 1 8.0187 2.3043 0.4126 33 1 10.1281 1.3958 1.8226 34 1 10.0353 3.1665 1.9786 35 1 10.3210 -0.0261 4.1370 36 1 11.2054 0.6588 6.5805 37 1 10.5642 4.1466 7.3476 38 1 13.2761 3.8254 6.3619 39 1 12.3102 3.1845 9.5992 40 1 10.7418 1.5067 8.7975 41 1 10.4651 4.1081 4.4038 42 1 6.0310 0.1671 0.3580 43 1 6.0307 0.1663 2.1383 44 1 3.7237 1.0743 2.1386 45 1 3.8044 -0.4646 1.2482 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475160_14644196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:33 Heat of formation + Delta-G solvation = -121.979456 kcal Electronic energy + Delta-G solvation = -27053.160523 eV Core-core repulsion = 23037.350753 eV Total energy + Delta-G solvation = -4015.809771 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.32396 -41.85516 -40.79010 -39.00628 -37.70155 -37.55723 -35.30232 -33.21678 -31.92379 -31.89833 -31.20478 -29.30924 -28.43193 -25.48478 -24.44633 -23.83982 -22.19685 -21.62033 -21.34545 -21.15586 -20.70925 -18.95759 -18.67554 -18.12252 -17.85004 -17.51497 -17.39653 -16.70412 -16.33508 -16.24972 -15.57773 -15.33910 -15.16890 -14.97771 -14.93040 -14.58946 -14.39877 -14.22393 -14.04269 -13.95274 -13.83922 -13.80946 -13.42689 -13.31544 -13.01240 -12.76955 -12.64528 -12.39395 -12.20851 -12.08584 -11.99823 -11.88280 -11.59289 -11.49358 -11.35888 -10.91571 -10.64522 -10.05256 -9.78576 -8.94038 -4.96818 1.06282 1.12329 1.26672 1.65560 1.68334 1.69225 1.88139 1.96034 2.31761 2.53028 3.46639 3.50521 3.55105 3.65201 3.71572 3.80044 3.91846 4.06327 4.07610 4.17995 4.24023 4.24838 4.25885 4.29982 4.33483 4.39531 4.41584 4.50278 4.61540 4.65337 4.67786 4.76999 4.80913 4.92714 5.02682 5.07575 5.09152 5.24132 5.26795 5.29396 5.30609 5.33634 5.53775 6.01450 6.14984 6.57389 6.62047 6.68459 6.71014 7.31498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.461 3.539 4 O -0.542 6.542 5 C -0.074 4.074 6 H 0.140 0.860 7 C -0.100 4.100 8 C -0.113 4.113 9 C 0.143 3.857 10 H 0.056 0.944 11 N -0.712 5.712 12 C 0.510 3.490 13 O -0.579 6.579 14 C -0.066 4.066 15 C 0.033 3.967 16 C -0.200 4.200 17 C -0.203 4.203 18 C -0.022 4.022 19 C -0.053 4.053 20 O -0.558 6.558 21 Si 0.811 3.189 22 N -0.538 5.538 23 C -0.119 4.119 24 C -0.104 4.104 25 H 0.129 0.871 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.420 0.580 33 H 0.147 0.853 34 H 0.128 0.872 35 H 0.142 0.858 36 H 0.151 0.849 37 H 0.099 0.901 38 H 0.397 0.603 39 H -0.293 1.293 40 H -0.295 1.295 41 H 0.418 0.582 42 H 0.094 0.906 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.068 -3.070 -7.422 9.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.305 3.695 4 O -0.431 6.431 5 C -0.093 4.093 6 H 0.158 0.842 7 C -0.138 4.138 8 C -0.150 4.150 9 C 0.038 3.962 10 H 0.074 0.926 11 N -0.365 5.365 12 C 0.297 3.703 13 O -0.458 6.458 14 C -0.107 4.107 15 C -0.081 4.081 16 C -0.224 4.224 17 C -0.228 4.228 18 C -0.136 4.136 19 C -0.163 4.163 20 O -0.366 6.366 21 Si 0.716 3.284 22 N -0.133 5.133 23 C -0.157 4.157 24 C -0.142 4.142 25 H 0.147 0.853 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.258 0.742 33 H 0.164 0.836 34 H 0.146 0.854 35 H 0.160 0.840 36 H 0.168 0.832 37 H 0.116 0.884 38 H 0.248 0.752 39 H -0.221 1.221 40 H -0.222 1.222 41 H 0.255 0.745 42 H 0.113 0.887 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.848 -2.476 -5.750 7.349 hybrid contribution -1.172 0.989 -0.350 1.573 sum 2.676 -1.487 -6.100 6.825 Atomic orbital electron populations 1.23518 0.75165 1.05614 1.02331 1.86510 1.24657 1.33137 1.83541 1.24425 0.93136 0.80978 0.70923 1.90671 1.68199 1.37493 1.46768 1.21259 0.84946 0.99814 1.03240 0.84209 1.21370 0.95958 0.93203 1.03309 1.21732 0.93766 1.02028 0.97505 1.20942 0.79947 0.96153 0.99167 0.92567 1.45904 1.06876 1.74291 1.09421 1.21066 0.90769 0.75103 0.83389 1.90763 1.71466 1.50187 1.33409 1.20259 0.90073 1.08293 0.92026 1.19955 1.06554 0.87169 0.94387 1.20847 1.08448 0.97963 0.95156 1.20911 1.09225 0.93443 0.99185 1.20961 1.09343 0.94208 0.89077 1.24926 0.91117 0.99485 1.00733 1.86438 1.24908 1.36823 1.88386 0.93076 0.85074 0.77502 0.72779 1.41885 1.51396 1.08783 1.11220 1.21830 0.94258 0.96316 1.03319 1.21438 0.95905 1.01560 0.95309 0.85254 0.92422 0.91918 0.90211 0.92778 0.87977 0.89947 0.74238 0.83578 0.85392 0.84049 0.83199 0.88387 0.75238 1.22058 1.22191 0.74453 0.88734 0.92767 0.92973 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.15 10.47 -51.44 -0.54 -1.69 16 3 C 0.46 2.09 7.25 71.23 0.52 2.60 16 4 O -0.54 -6.10 15.73 21.97 0.35 -5.76 16 5 C -0.07 0.18 2.63 -11.54 -0.03 0.15 16 6 H 0.14 -1.08 8.14 -2.39 -0.02 -1.10 16 7 C -0.10 0.23 4.49 30.60 0.14 0.37 16 8 C -0.11 0.82 5.39 30.59 0.16 0.98 16 9 C 0.14 -0.41 2.45 44.99 0.11 -0.30 16 10 H 0.06 0.25 7.58 -2.39 -0.02 0.23 16 11 N -0.71 4.19 5.08 -442.53 -2.25 1.94 16 12 C 0.51 0.26 7.79 87.65 0.68 0.94 16 13 O -0.58 -7.02 15.70 -3.04 -0.05 -7.07 16 14 C -0.07 0.38 6.24 29.10 0.18 0.56 16 15 C 0.03 0.07 5.66 41.08 0.23 0.30 16 16 C -0.20 -0.95 10.76 22.14 0.24 -0.71 16 17 C -0.20 -0.95 9.37 22.14 0.21 -0.74 16 18 C -0.02 -0.09 6.51 41.08 0.27 0.18 16 19 C -0.05 -0.11 3.08 71.24 0.22 0.11 16 20 O -0.56 -0.50 12.88 -148.98 -1.92 -2.42 16 21 Si 0.81 0.06 30.58 68.60 2.10 2.16 16 22 N -0.54 -1.41 6.07 -171.11 -1.04 -2.45 16 23 C -0.12 0.36 5.50 30.59 0.17 0.53 16 24 C -0.10 0.18 5.13 30.59 0.16 0.33 16 25 H 0.13 -0.79 8.14 -2.39 -0.02 -0.80 16 26 H 0.06 0.05 8.13 -2.38 -0.02 0.04 16 27 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 28 H 0.08 -0.15 8.10 -2.39 -0.02 -0.17 16 29 H 0.05 0.13 8.10 -2.39 -0.02 0.11 16 30 H 0.10 -1.24 8.14 -2.39 -0.02 -1.26 16 31 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 32 H 0.42 -5.62 8.60 -92.71 -0.80 -6.42 16 33 H 0.15 -1.66 8.14 -2.39 -0.02 -1.68 16 34 H 0.13 -1.44 8.14 -2.39 -0.02 -1.46 16 35 H 0.14 0.34 8.06 -2.91 -0.02 0.32 16 36 H 0.15 0.20 6.22 -2.91 -0.02 0.18 16 37 H 0.10 0.40 7.96 -2.39 -0.02 0.38 16 38 H 0.40 -2.81 8.70 -74.06 -0.64 -3.45 16 39 H -0.29 -1.79 7.11 99.48 0.71 -1.09 16 40 H -0.29 -1.95 7.11 99.48 0.71 -1.24 16 41 H 0.42 -0.25 8.96 -92.71 -0.83 -1.08 16 42 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 43 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 44 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.09 -0.21 8.11 -2.38 -0.02 -0.23 16 Total: 0.00 -28.60 373.48 -0.11 -28.70 By element: Atomic # 1 Polarization: -18.71 SS G_CDS: -1.21 Total: -19.92 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 4.45 Total: 6.50 kcal Atomic # 7 Polarization: 2.78 SS G_CDS: -3.29 Total: -0.51 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -2.16 Total: -16.93 kcal Atomic # 14 Polarization: 0.06 SS G_CDS: 2.10 Total: 2.16 kcal Total: -28.60 -0.11 -28.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475160_14644196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.277 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds