Wall clock time and date at job start Tue Mar 9 2021 12:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 117.00102 * 2 1 4 4 O 1.20825 * 119.99711 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00160 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.46807 * 299.99397 * 5 3 2 7 7 C 1.53001 * 109.47135 * 59.99410 * 5 3 2 8 8 C 1.53005 * 109.47165 * 180.02562 * 7 5 3 9 9 C 1.53000 * 109.47027 * 300.00150 * 8 7 5 10 10 H 1.08993 * 109.47266 * 300.00171 * 9 8 7 11 11 N 1.46501 * 109.47383 * 179.97438 * 9 8 7 12 12 C 1.34773 * 119.99557 * 84.99760 * 11 9 8 13 13 O 1.21278 * 120.00306 * 0.02562 * 12 11 9 14 14 C 1.50703 * 119.99605 * 180.02562 * 12 11 9 15 15 O 1.42904 * 109.47031 * 180.02562 * 14 12 11 16 16 C 1.35895 * 117.00128 * 179.97438 * 15 14 12 17 17 C 1.38709 * 120.05826 * 180.02562 * 16 15 14 18 18 C 1.50705 * 120.02672 * 359.96119 * 17 16 15 19 19 O 1.42893 * 109.47388 * 75.01909 * 18 17 16 20 20 Si 1.86297 * 109.47043 * 195.02169 * 18 17 16 21 21 C 1.38164 * 119.94688 * 179.97438 * 17 16 15 22 22 C 1.38245 * 120.05645 * 0.02562 * 21 17 16 23 23 C 1.38290 * 120.10982 * 359.97438 * 22 21 17 24 24 C 1.38126 * 120.05768 * 0.02562 * 23 22 21 25 25 C 1.53009 * 109.47084 * 59.99765 * 9 8 7 26 26 C 1.52997 * 109.47176 * 299.99921 * 25 9 8 27 27 H 1.08999 * 109.46940 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47376 * 300.00369 * 1 2 3 29 29 H 1.08997 * 109.46842 * 60.00613 * 1 2 3 30 30 H 1.09000 * 109.47097 * 299.99892 * 7 5 3 31 31 H 1.08995 * 109.47166 * 60.00571 * 7 5 3 32 32 H 1.08997 * 109.47344 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.46936 * 59.99890 * 8 7 5 34 34 H 0.97002 * 120.00119 * 265.00148 * 11 9 8 35 35 H 1.09000 * 109.47423 * 60.00375 * 14 12 11 36 36 H 1.09002 * 109.47439 * 299.99751 * 14 12 11 37 37 H 1.09006 * 109.46723 * 315.01580 * 18 17 16 38 38 H 0.96704 * 114.00005 * 60.00039 * 19 18 17 39 39 H 1.48500 * 110.00041 * 58.67581 * 20 18 17 40 40 H 1.48496 * 110.00176 * 179.97438 * 20 18 17 41 41 H 1.07997 * 119.97418 * 180.02562 * 21 17 16 42 42 H 1.07995 * 119.94685 * 179.72562 * 22 21 17 43 43 H 1.07995 * 119.97112 * 180.02562 * 23 22 21 44 44 H 1.07998 * 120.03128 * 180.02562 * 24 23 22 45 45 H 1.09001 * 109.46855 * 60.00375 * 25 9 8 46 46 H 1.09003 * 109.47132 * 179.97438 * 25 9 8 47 47 H 1.08997 * 109.47139 * 180.02562 * 26 25 9 48 48 H 1.09003 * 109.47117 * 300.00193 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9556 0.7810 0.8909 7 6 4.1139 0.5810 -1.2482 8 6 5.6419 0.6605 -1.2473 9 6 6.0762 2.1275 -1.2472 10 1 5.6872 2.6217 -2.1374 11 7 7.5392 2.2038 -1.2457 12 6 8.2185 2.1369 -2.4078 13 8 7.6188 2.0141 -3.4547 14 6 9.7236 2.2148 -2.4062 15 8 10.2067 2.1226 -3.7480 16 6 11.5531 2.1773 -3.9241 17 6 12.0908 2.0943 -5.2000 18 6 11.1824 1.9424 -6.3928 19 8 10.5498 3.1929 -6.6721 20 14 12.1826 1.4085 -7.8711 21 6 13.4600 2.1507 -5.3764 22 6 14.2940 2.2892 -4.2825 23 6 13.7603 2.3722 -3.0094 24 6 12.3922 2.3163 -2.8277 25 6 5.5285 2.8215 0.0016 26 6 4.0006 2.7420 0.0007 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 3.8049 -0.4643 -1.2480 31 1 3.7246 1.0748 -2.1385 32 1 6.0320 0.1657 -2.1367 33 1 6.0309 0.1664 -0.3570 34 1 8.0189 2.3023 -0.4084 35 1 10.1293 1.3929 -1.8164 36 1 10.0379 3.1637 -1.9717 37 1 10.4227 1.1909 -6.1775 38 1 11.1671 3.9097 -6.8730 39 1 12.8711 0.1249 -7.5817 40 1 11.2982 1.2546 -9.0540 41 1 13.8792 2.0865 -6.3696 42 1 15.3641 2.3286 -4.4221 43 1 14.4139 2.4808 -2.1565 44 1 11.9759 2.3816 -1.8334 45 1 5.9176 2.3274 0.8919 46 1 5.8383 3.8666 0.0019 47 1 3.6105 3.2367 0.8901 48 1 3.6116 3.2361 -0.8897 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14475160_2989392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:48 Heat of formation + Delta-G solvation = -164.657882 kcal Electronic energy + Delta-G solvation = -30630.382436 eV Core-core repulsion = 26231.239568 eV Total energy + Delta-G solvation = -4399.142868 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.165 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.83431 -41.55033 -40.75646 -39.20478 -38.31571 -37.40293 -37.35228 -35.36963 -32.76401 -32.05878 -31.83805 -31.05960 -29.29953 -28.35343 -26.60612 -24.87815 -23.95673 -23.47011 -22.60590 -21.98582 -21.59213 -20.86579 -19.46901 -18.60724 -18.42518 -17.90800 -17.76139 -17.48879 -17.35010 -17.20773 -16.85543 -16.50489 -15.95195 -15.74605 -15.55933 -15.27108 -15.07545 -14.99549 -14.91810 -14.85026 -14.24776 -14.09963 -13.97157 -13.79618 -13.73245 -13.47041 -13.37788 -13.06607 -13.02206 -12.71813 -12.48927 -12.38200 -12.33453 -12.19767 -11.96316 -11.78914 -11.68747 -11.67325 -11.50380 -11.30232 -10.83360 -10.23959 -10.18190 -10.01118 -9.22662 -4.96538 0.19364 0.38386 1.20261 1.39388 1.43025 1.50269 1.71236 1.72718 2.08132 2.53434 2.66315 3.38618 3.40095 3.49546 3.58558 3.64682 3.76291 3.77443 3.81411 3.85453 3.88506 3.96785 4.00896 4.10018 4.15903 4.18327 4.21319 4.24314 4.25235 4.29093 4.32004 4.49064 4.50687 4.58330 4.64856 4.67297 4.83047 4.87968 4.94702 4.97685 5.00120 5.11960 5.17140 5.23577 5.29588 5.34720 5.42250 5.45508 5.66680 6.22451 6.37716 6.74716 6.78038 7.10569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.463 3.537 4 O -0.504 6.504 5 C -0.081 4.081 6 H 0.112 0.888 7 C -0.109 4.109 8 C -0.128 4.128 9 C 0.144 3.856 10 H 0.093 0.907 11 N -0.725 5.725 12 C 0.516 3.484 13 O -0.506 6.506 14 C 0.039 3.961 15 O -0.278 6.278 16 C 0.151 3.849 17 C -0.149 4.149 18 C -0.057 4.057 19 O -0.532 6.532 20 Si 0.682 3.318 21 C -0.075 4.075 22 C -0.152 4.152 23 C -0.073 4.073 24 C -0.212 4.212 25 C -0.125 4.125 26 C -0.101 4.101 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.402 0.598 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.373 0.627 39 H -0.257 1.257 40 H -0.254 1.254 41 H 0.136 0.864 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.221 -0.024 5.302 7.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.306 3.694 4 O -0.391 6.391 5 C -0.100 4.100 6 H 0.130 0.870 7 C -0.147 4.147 8 C -0.167 4.167 9 C 0.040 3.960 10 H 0.112 0.888 11 N -0.379 5.379 12 C 0.300 3.700 13 O -0.379 6.379 14 C -0.040 4.040 15 O -0.190 6.190 16 C 0.105 3.895 17 C -0.150 4.150 18 C -0.168 4.168 19 O -0.336 6.336 20 Si 0.584 3.416 21 C -0.092 4.092 22 C -0.170 4.170 23 C -0.091 4.091 24 C -0.231 4.231 25 C -0.163 4.163 26 C -0.139 4.139 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.236 0.764 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.131 0.869 38 H 0.219 0.781 39 H -0.182 1.182 40 H -0.179 1.179 41 H 0.153 0.847 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.099 0.901 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.967 -0.820 3.850 5.588 hybrid contribution -0.250 -0.106 1.408 1.434 sum 3.717 -0.926 5.258 6.505 Atomic orbital electron populations 1.23316 0.75951 1.03982 1.02718 1.86504 1.23719 1.33368 1.83898 1.23785 0.92008 0.81418 0.72185 1.90692 1.67192 1.36375 1.44886 1.21171 0.87023 0.99506 1.02271 0.87036 1.21499 0.95389 1.01660 0.96131 1.21930 0.94996 0.96369 1.03380 1.21088 0.78593 0.96353 0.99988 0.88848 1.45875 1.07495 1.75870 1.08668 1.20022 0.88663 0.77042 0.84258 1.90807 1.69853 1.46268 1.30983 1.22481 0.92935 1.03810 0.84794 1.86239 1.18845 1.87556 1.26324 1.18803 0.81997 0.95175 0.93524 1.19737 0.94246 1.07679 0.93381 1.24934 1.00298 0.90757 1.00775 1.86605 1.36090 1.19008 1.91886 0.95240 0.83105 0.85522 0.77770 1.20863 0.91502 0.97770 0.99094 1.21078 1.00245 1.03404 0.92246 1.21024 0.94201 0.96291 0.97587 1.21298 0.94721 1.09162 0.97926 1.21815 0.95466 1.01678 0.97305 1.21395 0.94500 0.93472 1.04568 0.87863 0.91768 0.91737 0.89851 0.90834 0.90514 0.91091 0.76412 0.88941 0.88811 0.86911 0.78064 1.18198 1.17887 0.84691 0.85181 0.85344 0.85293 0.90776 0.90238 0.90083 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 101.05 1.07 1.06 16 2 O -0.36 -0.53 10.47 -39.27 -0.41 -0.95 16 3 C 0.46 0.88 7.26 36.00 0.26 1.15 16 4 O -0.50 -2.45 15.73 -18.75 -0.29 -2.74 16 5 C -0.08 0.09 2.63 -91.77 -0.24 -0.15 16 6 H 0.11 -0.31 8.14 -51.93 -0.42 -0.73 16 7 C -0.11 0.12 5.14 -26.73 -0.14 -0.02 16 8 C -0.13 0.16 5.50 -26.73 -0.15 0.02 16 9 C 0.14 -0.18 2.45 -67.93 -0.17 -0.34 16 10 H 0.09 0.12 7.58 -51.93 -0.39 -0.27 16 11 N -0.73 1.44 5.08 -53.80 -0.27 1.16 16 12 C 0.52 0.77 7.87 -10.99 -0.09 0.68 16 13 O -0.51 -3.40 16.16 -14.35 -0.23 -3.63 16 14 C 0.04 -0.02 5.22 36.01 0.19 0.16 16 15 O -0.28 -0.97 9.00 -39.32 -0.35 -1.32 16 16 C 0.15 0.32 6.66 -39.21 -0.26 0.06 16 17 C -0.15 -0.26 5.27 -104.47 -0.55 -0.81 16 18 C -0.06 -0.14 2.38 36.01 0.09 -0.05 16 19 O -0.53 -1.69 12.88 -35.23 -0.45 -2.15 16 20 Si 0.68 0.26 29.92 -169.99 -5.09 -4.83 16 21 C -0.07 0.03 8.66 -39.61 -0.34 -0.32 16 22 C -0.15 0.14 10.04 -39.56 -0.40 -0.26 16 23 C -0.07 0.07 10.04 -39.60 -0.40 -0.33 16 24 C -0.21 0.04 9.04 -39.43 -0.36 -0.32 16 25 C -0.12 0.38 5.39 -26.73 -0.14 0.23 16 26 C -0.10 0.13 4.50 -26.73 -0.12 0.01 16 27 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 28 H 0.06 -0.02 8.13 -51.93 -0.42 -0.44 16 29 H 0.06 -0.01 8.13 -51.93 -0.42 -0.43 16 30 H 0.08 -0.10 8.11 -51.93 -0.42 -0.52 16 31 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 32 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 33 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 34 H 0.40 -2.13 8.60 -40.82 -0.35 -2.48 16 35 H 0.09 -0.30 7.66 -51.93 -0.40 -0.70 16 36 H 0.09 -0.29 7.66 -51.93 -0.40 -0.68 16 37 H 0.11 0.50 7.83 -51.93 -0.41 0.09 16 38 H 0.37 -0.51 8.70 45.56 0.40 -0.12 16 39 H -0.26 -0.66 7.11 56.52 0.40 -0.25 16 40 H -0.25 -0.96 7.11 56.52 0.40 -0.56 16 41 H 0.14 -0.38 5.13 -52.49 -0.27 -0.65 16 42 H 0.13 -0.39 8.06 -52.49 -0.42 -0.81 16 43 H 0.13 -0.39 8.06 -52.49 -0.42 -0.81 16 44 H 0.13 -0.35 6.30 -52.49 -0.33 -0.68 16 45 H 0.07 -0.33 8.14 -51.93 -0.42 -0.75 16 46 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 47 H 0.08 -0.08 8.10 -51.93 -0.42 -0.50 16 48 H 0.08 0.01 8.10 -51.93 -0.42 -0.41 16 LS Contribution 395.19 15.07 5.96 5.96 Total: 0.00 -12.04 395.19 -10.16 -22.20 By element: Atomic # 1 Polarization: -7.22 SS G_CDS: -7.26 Total: -14.48 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.75 Total: 0.77 kcal Atomic # 7 Polarization: 1.44 SS G_CDS: -0.27 Total: 1.16 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -1.75 Total: -10.78 kcal Atomic # 14 Polarization: 0.26 SS G_CDS: -5.09 Total: -4.83 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -12.04 -10.16 -22.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475160_2989392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.461 kcal (2) G-P(sol) polarization free energy of solvation -12.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds