Wall clock time and date at job start Tue Mar 9 2021 12:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34235 * 116.99690 * 2 1 4 4 O 1.20820 * 119.99958 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99987 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.46923 * 300.00274 * 5 3 2 7 7 C 1.52999 * 109.47098 * 59.99774 * 5 3 2 8 8 C 1.53005 * 109.47076 * 179.97438 * 7 5 3 9 9 C 1.52995 * 109.47228 * 300.00529 * 8 7 5 10 10 H 1.09007 * 109.46875 * 299.99554 * 9 8 7 11 11 N 1.46499 * 109.47022 * 179.97438 * 9 8 7 12 12 C 1.34784 * 119.99971 * 84.99732 * 11 9 8 13 13 O 1.21274 * 119.99897 * 359.72827 * 12 11 9 14 14 C 1.50695 * 119.99635 * 179.97438 * 12 11 9 15 15 C 1.53002 * 109.47004 * 179.97438 * 14 12 11 16 16 O 1.42902 * 109.47361 * 180.02562 * 15 14 12 17 17 C 1.35898 * 116.99734 * 180.02562 * 16 15 14 18 18 C 1.38731 * 120.06052 * 359.72134 * 17 16 15 19 19 C 1.38139 * 119.94589 * 179.74741 * 18 17 16 20 20 C 1.38272 * 120.05563 * 0.50977 * 19 18 17 21 21 C 1.50700 * 119.94473 * 179.74686 * 20 19 18 22 22 O 1.42898 * 109.46908 * 245.01888 * 21 20 19 23 23 Si 1.86295 * 109.47101 * 5.02112 * 21 20 19 24 24 C 1.38268 * 120.10872 * 359.76434 * 20 19 18 25 25 C 1.38141 * 120.05779 * 359.97438 * 24 20 19 26 26 C 1.52999 * 109.47524 * 59.99745 * 9 8 7 27 27 C 1.52996 * 109.47326 * 179.97438 * 5 3 2 28 28 H 1.09002 * 109.47436 * 60.00463 * 1 2 3 29 29 H 1.09008 * 109.47097 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47139 * 299.99842 * 1 2 3 31 31 H 1.08996 * 109.47227 * 300.00558 * 7 5 3 32 32 H 1.09007 * 109.47200 * 60.00239 * 7 5 3 33 33 H 1.09001 * 109.46819 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.46852 * 60.00557 * 8 7 5 35 35 H 0.96999 * 119.99984 * 264.99579 * 11 9 8 36 36 H 1.09005 * 109.47403 * 300.00056 * 14 12 11 37 37 H 1.09002 * 109.47422 * 60.00295 * 14 12 11 38 38 H 1.08997 * 109.47244 * 300.00535 * 15 14 12 39 39 H 1.09002 * 109.46787 * 59.99910 * 15 14 12 40 40 H 1.08006 * 120.02485 * 359.97438 * 18 17 16 41 41 H 1.08001 * 119.97508 * 180.28039 * 19 18 17 42 42 H 1.08998 * 109.46878 * 125.02460 * 21 20 19 43 43 H 0.96706 * 113.99924 * 60.00342 * 22 21 20 44 44 H 1.48502 * 110.00262 * 58.68565 * 23 21 20 45 45 H 1.48502 * 109.99758 * 179.97438 * 23 21 20 46 46 H 1.08002 * 119.97110 * 179.97438 * 24 20 19 47 47 H 1.08002 * 120.03154 * 180.02562 * 25 24 20 48 48 H 1.08996 * 109.46825 * 59.99807 * 26 9 8 49 49 H 1.08993 * 109.47204 * 180.02562 * 26 9 8 50 50 H 1.09006 * 109.46787 * 60.00196 * 27 5 3 51 51 H 1.09003 * 109.47095 * 300.00297 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9563 0.7807 0.8891 7 6 4.1128 0.5817 -1.2501 8 6 5.6408 0.6624 -1.2511 9 6 6.0740 2.1297 -1.2512 10 1 5.6835 2.6238 -2.1410 11 7 7.5369 2.2070 -1.2514 12 6 8.2151 2.1408 -2.4144 13 8 7.6144 2.0124 -3.4601 14 6 9.7199 2.2209 -2.4146 15 6 10.2357 2.1213 -3.8516 16 8 11.6627 2.1966 -3.8519 17 6 12.2841 2.1235 -5.0582 18 6 11.5362 1.9765 -6.2174 19 6 12.1700 1.9077 -7.4429 20 6 13.5493 1.9747 -7.5139 21 6 14.2384 1.8937 -8.8517 22 8 15.0259 0.7027 -8.9104 23 14 12.9610 1.8612 -10.2073 24 6 14.2973 2.1156 -6.3596 25 6 13.6679 2.1902 -5.1321 26 6 5.5274 2.8231 -0.0016 27 6 4.0000 2.7422 -0.0011 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.8038 -0.4635 -1.2503 32 1 3.7227 1.0760 -2.1400 33 1 6.0301 0.1680 -2.1411 34 1 6.0312 0.1684 -0.3614 35 1 8.0175 2.3057 -0.4147 36 1 10.0334 3.1704 -1.9806 37 1 10.1275 1.3997 -1.8250 38 1 9.9222 1.1717 -4.2852 39 1 9.8280 2.9422 -4.4416 40 1 10.4591 1.9195 -6.1620 41 1 11.5880 1.7978 -8.3460 42 1 14.8837 2.7626 -8.9811 43 1 14.5158 -0.1118 -8.8024 44 1 12.1150 3.0796 -10.1374 45 1 13.6280 1.7820 -11.5318 46 1 15.3745 2.1673 -6.4176 47 1 14.2526 2.3007 -4.2308 48 1 5.9178 2.3290 0.8881 49 1 5.8356 3.8685 -0.0020 50 1 3.6106 3.2365 0.8890 51 1 3.6099 3.2361 -0.8911 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475160_4549602.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:54 Heat of formation + Delta-G solvation = -175.747314 kcal Electronic energy + Delta-G solvation = -31579.335391 eV Core-core repulsion = 27024.174030 eV Total energy + Delta-G solvation = -4555.161361 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.181 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.86505 -41.38897 -40.90221 -39.31735 -38.91485 -37.55681 -37.16371 -35.34703 -33.43188 -32.10438 -31.88910 -31.58748 -30.85717 -28.56462 -26.64582 -25.74958 -24.50898 -23.82338 -23.38616 -22.23605 -21.87210 -21.45306 -20.74790 -19.49489 -18.65476 -18.31916 -17.93598 -17.70521 -17.48525 -17.45488 -17.30366 -16.90091 -16.43190 -16.11648 -15.87435 -15.67315 -15.38886 -15.20362 -14.96363 -14.77959 -14.69544 -14.46822 -14.29710 -14.22324 -14.07416 -13.93417 -13.62652 -13.55085 -13.29393 -13.03031 -12.85904 -12.83065 -12.63713 -12.38364 -12.21137 -12.18861 -12.03929 -11.86297 -11.76721 -11.71119 -11.57543 -11.48040 -11.35074 -10.95376 -10.41525 -10.08440 -10.04386 -9.21515 -5.01633 0.28238 0.30449 1.08560 1.31907 1.56705 1.61985 1.67603 1.76020 1.94722 2.50569 2.65881 3.48452 3.54377 3.56433 3.60517 3.67169 3.73783 3.83781 3.90312 3.92405 3.94283 4.04847 4.09178 4.19083 4.26483 4.26708 4.27682 4.31171 4.33480 4.35737 4.43614 4.45766 4.50348 4.62925 4.67036 4.68696 4.71664 4.78732 4.80184 4.94321 4.97631 5.04951 5.09342 5.11165 5.17983 5.25626 5.28407 5.30534 5.35380 5.49531 5.51090 5.72043 6.32774 6.51898 6.64215 6.78476 7.21369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.461 3.539 4 O -0.541 6.541 5 C -0.075 4.075 6 H 0.138 0.862 7 C -0.103 4.103 8 C -0.120 4.120 9 C 0.142 3.858 10 H 0.064 0.936 11 N -0.710 5.710 12 C 0.520 3.480 13 O -0.583 6.583 14 C -0.133 4.133 15 C 0.072 3.928 16 O -0.321 6.321 17 C 0.123 3.877 18 C -0.210 4.210 19 C -0.078 4.078 20 C -0.163 4.163 21 C -0.065 4.065 22 O -0.556 6.556 23 Si 0.768 3.232 24 C -0.060 4.060 25 C -0.159 4.159 26 C -0.114 4.114 27 C -0.100 4.100 28 H 0.058 0.942 29 H 0.129 0.871 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.420 0.580 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.141 0.859 41 H 0.145 0.855 42 H 0.107 0.893 43 H 0.395 0.605 44 H -0.290 1.290 45 H -0.298 1.298 46 H 0.139 0.861 47 H 0.142 0.858 48 H 0.099 0.901 49 H 0.082 0.918 50 H 0.078 0.922 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 -3.878 6.095 7.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.305 3.695 4 O -0.431 6.431 5 C -0.093 4.093 6 H 0.156 0.844 7 C -0.142 4.142 8 C -0.158 4.158 9 C 0.037 3.963 10 H 0.082 0.918 11 N -0.362 5.362 12 C 0.307 3.693 13 O -0.463 6.463 14 C -0.172 4.172 15 C -0.004 4.004 16 O -0.235 6.235 17 C 0.078 3.922 18 C -0.228 4.228 19 C -0.096 4.096 20 C -0.163 4.163 21 C -0.176 4.176 22 O -0.364 6.364 23 Si 0.675 3.325 24 C -0.078 4.078 25 C -0.177 4.177 26 C -0.152 4.152 27 C -0.138 4.138 28 H 0.077 0.923 29 H 0.147 0.853 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.258 0.742 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.124 0.876 43 H 0.245 0.755 44 H -0.217 1.217 45 H -0.226 1.226 46 H 0.157 0.843 47 H 0.160 0.840 48 H 0.118 0.882 49 H 0.101 0.899 50 H 0.096 0.904 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.618 -2.841 4.779 5.594 hybrid contribution -0.183 0.692 0.306 0.778 sum -0.801 -2.149 5.085 5.578 Atomic orbital electron populations 1.23515 0.75180 1.05597 1.02333 1.86508 1.24641 1.33158 1.83552 1.24424 0.93133 0.80970 0.70934 1.90672 1.68195 1.37493 1.46745 1.21259 0.84945 0.99832 1.03296 0.84416 1.21439 0.95780 1.01603 0.95348 1.21842 0.94378 0.96188 1.03422 1.21009 0.79505 0.96326 0.99480 0.91808 1.45891 1.07157 1.73805 1.09382 1.20629 0.90089 0.74998 0.83597 1.90742 1.71581 1.50892 1.33058 1.21441 0.90561 1.08097 0.97118 1.22471 0.77223 1.02508 0.98149 1.85959 1.21939 1.88046 1.27547 1.19181 0.92556 0.96051 0.84406 1.21426 1.01043 1.08081 0.92262 1.20988 0.93644 0.97355 0.97593 1.20325 0.93815 1.05851 0.96338 1.25032 1.01923 0.90471 1.00141 1.86461 1.38254 1.16051 1.95606 0.93823 0.78215 0.86353 0.74146 1.20980 1.00581 0.95583 0.90685 1.20669 0.91406 1.06241 0.99407 1.21731 0.93876 1.02078 0.97475 1.21357 0.95840 0.93212 1.03408 0.92347 0.85283 0.91994 0.89449 0.92583 0.92358 0.89002 0.74242 0.85695 0.85334 0.91373 0.91908 0.84167 0.83750 0.87594 0.75540 1.21734 1.22601 0.84329 0.84029 0.88234 0.89891 0.90357 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.36 -0.82 10.47 -51.46 -0.54 -1.36 16 3 C 0.46 1.64 7.26 71.24 0.52 2.15 16 4 O -0.54 -5.60 15.73 21.98 0.35 -5.25 16 5 C -0.07 0.26 2.63 -11.54 -0.03 0.23 16 6 H 0.14 -1.16 8.14 -2.39 -0.02 -1.18 16 7 C -0.10 0.35 5.14 30.60 0.16 0.50 16 8 C -0.12 0.56 5.49 30.59 0.17 0.73 16 9 C 0.14 -0.62 2.45 44.99 0.11 -0.51 16 10 H 0.06 0.12 7.58 -2.38 -0.02 0.10 16 11 N -0.71 4.82 5.08 -442.54 -2.25 2.57 16 12 C 0.52 -0.70 7.79 87.65 0.68 -0.01 16 13 O -0.58 -4.66 15.65 -3.01 -0.05 -4.71 16 14 C -0.13 0.79 6.07 29.85 0.18 0.97 16 15 C 0.07 -0.02 4.03 71.98 0.29 0.27 16 16 O -0.32 -0.81 10.14 -92.40 -0.94 -1.74 16 17 C 0.12 0.46 6.69 22.51 0.15 0.61 16 18 C -0.21 -0.50 9.04 22.36 0.20 -0.30 16 19 C -0.08 -0.07 8.66 22.25 0.19 0.12 16 20 C -0.16 -0.27 5.35 -19.85 -0.11 -0.37 16 21 C -0.07 -0.05 2.80 71.24 0.20 0.15 16 22 O -0.56 -0.62 12.83 -148.98 -1.91 -2.53 16 23 Si 0.77 -0.45 29.80 68.60 2.04 1.59 16 24 C -0.06 -0.13 9.68 22.25 0.22 0.08 16 25 C -0.16 -0.44 9.99 22.37 0.22 -0.22 16 26 C -0.11 0.92 5.39 30.58 0.16 1.09 16 27 C -0.10 0.33 4.49 30.58 0.14 0.47 16 28 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 29 H 0.13 -0.88 8.14 -2.38 -0.02 -0.90 16 30 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 31 H 0.09 -0.35 8.11 -2.39 -0.02 -0.37 16 32 H 0.06 0.00 8.14 -2.38 -0.02 -0.02 16 33 H 0.06 -0.02 8.14 -2.39 -0.02 -0.03 16 34 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 35 H 0.42 -5.64 8.60 -92.71 -0.80 -6.44 16 36 H 0.12 -1.16 8.14 -2.38 -0.02 -1.18 16 37 H 0.13 -1.27 8.14 -2.39 -0.02 -1.29 16 38 H 0.07 0.04 7.61 -2.39 -0.02 0.02 16 39 H 0.06 0.09 7.63 -2.39 -0.02 0.07 16 40 H 0.14 0.08 6.30 -2.91 -0.02 0.06 16 41 H 0.15 -0.47 4.90 -2.91 -0.01 -0.49 16 42 H 0.11 0.18 7.96 -2.39 -0.02 0.16 16 43 H 0.39 -2.67 8.70 -74.05 -0.64 -3.32 16 44 H -0.29 -1.37 7.11 99.48 0.71 -0.66 16 45 H -0.30 -1.98 7.11 99.48 0.71 -1.28 16 46 H 0.14 0.05 8.06 -2.91 -0.02 0.03 16 47 H 0.14 0.03 8.06 -2.91 -0.02 0.01 16 48 H 0.10 -1.24 8.14 -2.39 -0.02 -1.26 16 49 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 50 H 0.08 -0.20 8.10 -2.38 -0.02 -0.22 16 51 H 0.06 0.05 8.10 -2.39 -0.02 0.03 16 Total: 0.00 -24.92 416.66 0.91 -24.01 By element: Atomic # 1 Polarization: -19.26 SS G_CDS: -0.45 Total: -19.72 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 4.65 Total: 7.13 kcal Atomic # 7 Polarization: 4.82 SS G_CDS: -2.25 Total: 2.57 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -3.09 Total: -15.59 kcal Atomic # 14 Polarization: -0.45 SS G_CDS: 2.04 Total: 1.59 kcal Total: -24.92 0.91 -24.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475160_4549602.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.733 kcal (2) G-P(sol) polarization free energy of solvation -24.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds