Wall clock time and date at job start Tue Mar 9 2021 12:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99669 * 2 1 4 4 O 1.20827 * 120.00164 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99906 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.47278 * 60.00209 * 5 3 2 7 7 C 1.53004 * 109.46939 * 180.02562 * 5 3 2 8 8 C 1.53003 * 109.46813 * 179.97438 * 7 5 3 9 9 C 1.52997 * 109.47184 * 299.99694 * 8 7 5 10 10 H 1.08996 * 109.47552 * 300.00046 * 9 8 7 11 11 N 1.46501 * 109.47260 * 179.97438 * 9 8 7 12 12 C 1.34781 * 119.99929 * 154.99951 * 11 9 8 13 13 O 1.21610 * 119.99884 * 0.02562 * 12 11 9 14 14 C 1.47375 * 119.99561 * 180.02562 * 12 11 9 15 15 C 1.36417 * 127.18843 * 179.97438 * 14 12 11 16 16 C 1.50692 * 125.80355 * 0.02562 * 15 14 12 17 17 O 1.42900 * 109.47397 * 90.00042 * 16 15 14 18 18 C 1.35899 * 117.00511 * 180.02562 * 17 16 15 19 19 C 1.38726 * 120.05721 * 180.02562 * 18 17 16 20 20 C 1.38153 * 119.94564 * 180.02562 * 19 18 17 21 21 C 1.38269 * 120.05022 * 0.02562 * 20 19 18 22 22 C 1.50700 * 119.93900 * 179.97438 * 21 20 19 23 23 O 1.42896 * 109.47341 * 300.00123 * 22 21 20 24 24 Si 1.86300 * 109.46849 * 180.02562 * 22 21 20 25 25 C 1.38264 * 120.11486 * 0.25533 * 21 20 19 26 26 C 1.38138 * 120.05431 * 359.44549 * 25 21 20 27 27 O 1.33659 * 108.39648 * 180.26684 * 15 14 12 28 28 C 1.34211 * 110.90747 * 359.59092 * 27 15 14 29 29 C 1.34183 * 109.12420 * 0.41377 * 28 27 15 30 30 C 1.53004 * 109.46996 * 60.00418 * 9 8 7 31 31 C 1.52997 * 109.47105 * 300.00179 * 5 3 2 32 32 H 1.08995 * 109.47197 * 60.00228 * 1 2 3 33 33 H 1.09005 * 109.46611 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47110 * 299.99545 * 1 2 3 35 35 H 1.08996 * 109.47274 * 60.00332 * 7 5 3 36 36 H 1.08992 * 109.47119 * 299.99746 * 7 5 3 37 37 H 1.08999 * 109.46981 * 179.97438 * 8 7 5 38 38 H 1.09003 * 109.47247 * 59.99531 * 8 7 5 39 39 H 0.97004 * 120.00043 * 335.00441 * 11 9 8 40 40 H 1.09007 * 109.47228 * 329.99798 * 16 15 14 41 41 H 1.09003 * 109.47771 * 210.00124 * 16 15 14 42 42 H 1.07999 * 120.03394 * 359.97438 * 19 18 17 43 43 H 1.07995 * 119.97802 * 179.97438 * 20 19 18 44 44 H 1.09000 * 109.46989 * 60.00454 * 22 21 20 45 45 H 0.96693 * 114.00306 * 299.99773 * 23 22 21 46 46 H 1.48506 * 110.00048 * 58.68772 * 24 22 21 47 47 H 1.48502 * 109.99996 * 180.02562 * 24 22 21 48 48 H 1.08002 * 119.97450 * 179.70367 * 25 21 20 49 49 H 1.08005 * 120.02881 * 180.29706 * 26 25 21 50 50 H 1.08001 * 125.44056 * 180.17111 * 28 27 15 51 51 H 1.08000 * 127.01942 * 179.73382 * 29 28 27 52 52 H 1.08994 * 109.47337 * 60.00000 * 30 9 8 53 53 H 1.09001 * 109.46975 * 179.97438 * 30 9 8 54 54 H 1.08996 * 109.47552 * 299.99940 * 31 5 3 55 55 H 1.08999 * 109.47219 * 59.99969 * 31 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9557 0.7811 -0.8908 7 6 4.0000 2.7422 0.0002 8 6 5.5279 2.8224 0.0002 9 6 6.0750 2.1282 1.2491 10 1 5.6853 2.6218 2.1394 11 7 7.5380 2.2044 1.2489 12 6 8.2165 2.1375 2.4115 13 8 7.6142 2.0134 3.4607 14 6 9.6882 2.2147 2.4113 15 6 10.5168 2.1632 3.4937 16 6 10.0835 2.0140 4.9293 17 8 10.0173 0.6266 5.2652 18 6 9.6388 0.3161 6.5329 19 6 9.5537 -1.0112 6.9273 20 6 9.1681 -1.3243 8.2164 21 6 8.8666 -0.3160 9.1131 22 6 8.4457 -0.6604 10.5186 23 8 7.2586 -1.4548 10.4792 24 14 8.1121 0.9071 11.4686 25 6 8.9450 1.0075 8.7209 26 6 9.3360 1.3260 7.4348 27 8 11.7780 2.2728 3.0651 28 6 11.8214 2.3873 1.7286 29 6 10.5702 2.3639 1.2445 30 6 5.6413 0.6609 1.2484 31 6 4.1138 0.5811 1.2483 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5137 0.8900 35 1 3.6107 3.2357 0.8906 36 1 3.6099 3.2369 -0.8893 37 1 5.8369 3.8676 0.0003 38 1 5.9177 2.3286 -0.8900 39 1 8.0184 2.3030 0.4120 40 1 9.1009 2.4671 5.0612 41 1 10.8031 2.5113 5.5797 42 1 9.7879 -1.7993 6.2269 43 1 9.1014 -2.3575 8.5238 44 1 9.2417 -1.2206 11.0093 45 1 6.5071 -1.0183 10.0553 46 1 7.0504 1.6948 10.7920 47 1 7.6967 0.5812 12.8565 48 1 8.7043 1.7932 9.4218 49 1 9.4017 2.3601 7.1303 50 1 12.7198 2.4867 1.1374 51 1 10.2719 2.4395 0.2093 52 1 6.0310 0.1673 0.3582 53 1 6.0314 0.1663 2.1379 54 1 3.7245 1.0750 2.1385 55 1 3.8048 -0.4641 1.2482 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475160_4549634.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:16 Heat of formation + Delta-G solvation = -146.434782 kcal Electronic energy + Delta-G solvation = -39684.265388 eV Core-core repulsion = 34427.014501 eV Total energy + Delta-G solvation = -5257.250887 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.181 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -43.69874 -41.86597 -41.30665 -40.84140 -39.29891 -38.98468 -37.56799 -37.31754 -35.43736 -34.08817 -32.86841 -31.98650 -31.92076 -31.40820 -31.20107 -28.65664 -27.83699 -26.22254 -25.41035 -24.02679 -23.85888 -23.74382 -22.46888 -22.26976 -21.65065 -21.31657 -20.59611 -19.51348 -19.15945 -18.65431 -18.37188 -17.88851 -17.55904 -17.39740 -17.27760 -17.20128 -16.95146 -16.74669 -16.36356 -16.15171 -15.99656 -15.78585 -15.52583 -15.25464 -15.17548 -14.96346 -14.77064 -14.62892 -14.40346 -14.30228 -14.18660 -14.02040 -13.81427 -13.70742 -13.56917 -13.51241 -13.33082 -13.13487 -13.00668 -12.68917 -12.42500 -12.32554 -12.22331 -12.13293 -12.09651 -11.87885 -11.65862 -11.60619 -11.50526 -11.39229 -11.08062 -10.94329 -10.61118 -10.15207 -10.06142 -9.80745 -9.25341 -4.93332 -0.02191 0.25655 0.28524 1.05851 1.06812 1.31858 1.52751 1.59951 1.68732 1.94919 2.06183 2.13894 2.48063 2.62949 3.35919 3.42022 3.45827 3.51082 3.61000 3.66771 3.68720 3.75116 3.79100 3.90015 3.90689 3.94757 4.05580 4.11737 4.15942 4.24681 4.25786 4.27769 4.28294 4.30416 4.40178 4.41528 4.47804 4.55029 4.55129 4.65410 4.67808 4.68463 4.75465 4.82709 4.91282 4.94597 5.02060 5.05707 5.08101 5.13417 5.22373 5.24384 5.26231 5.29314 5.33346 5.45943 5.46359 5.67785 5.90780 6.25091 6.47548 6.47656 6.62592 7.13733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.462 3.538 4 O -0.540 6.540 5 C -0.075 4.075 6 H 0.138 0.862 7 C -0.099 4.099 8 C -0.113 4.113 9 C 0.144 3.856 10 H 0.066 0.934 11 N -0.702 5.702 12 C 0.584 3.416 13 O -0.572 6.572 14 C -0.223 4.223 15 C 0.039 3.961 16 C 0.135 3.865 17 O -0.322 6.322 18 C 0.125 3.875 19 C -0.162 4.162 20 C -0.057 4.057 21 C -0.158 4.158 22 C -0.077 4.077 23 O -0.549 6.549 24 Si 0.765 3.235 25 C -0.076 4.076 26 C -0.206 4.206 27 O -0.178 6.178 28 C -0.013 4.013 29 C -0.195 4.195 30 C -0.120 4.120 31 C -0.102 4.102 32 H 0.062 0.938 33 H 0.128 0.872 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.417 0.583 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.127 0.873 45 H 0.385 0.615 46 H -0.286 1.286 47 H -0.302 1.302 48 H 0.149 0.851 49 H 0.147 0.853 50 H 0.252 0.748 51 H 0.194 0.806 52 H 0.090 0.910 53 H 0.052 0.948 54 H 0.056 0.944 55 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.130 1.692 -6.468 8.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.306 3.694 4 O -0.430 6.430 5 C -0.093 4.093 6 H 0.156 0.844 7 C -0.137 4.137 8 C -0.151 4.151 9 C 0.040 3.960 10 H 0.085 0.915 11 N -0.353 5.353 12 C 0.372 3.628 13 O -0.453 6.453 14 C -0.228 4.228 15 C -0.014 4.014 16 C 0.061 3.939 17 O -0.236 6.236 18 C 0.080 3.920 19 C -0.181 4.181 20 C -0.075 4.075 21 C -0.159 4.159 22 C -0.186 4.186 23 O -0.357 6.357 24 Si 0.671 3.329 25 C -0.094 4.094 26 C -0.224 4.224 27 O -0.073 6.073 28 C -0.079 4.079 29 C -0.214 4.214 30 C -0.159 4.159 31 C -0.140 4.140 32 H 0.081 0.919 33 H 0.146 0.854 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.254 0.746 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.151 0.849 43 H 0.158 0.842 44 H 0.144 0.856 45 H 0.234 0.766 46 H -0.213 1.213 47 H -0.230 1.230 48 H 0.166 0.834 49 H 0.165 0.835 50 H 0.267 0.733 51 H 0.211 0.789 52 H 0.109 0.891 53 H 0.071 0.929 54 H 0.075 0.925 55 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.569 1.819 -5.000 7.014 hybrid contribution -1.448 -0.243 -0.872 1.707 sum 3.121 1.576 -5.872 6.834 Atomic orbital electron populations 1.23513 0.75158 1.05573 1.02369 1.86511 1.24665 1.33177 1.83550 1.24379 0.93056 0.80983 0.70963 1.90672 1.68152 1.37431 1.46705 1.21255 0.85039 0.99903 1.03130 0.84392 1.21361 0.95596 0.93125 1.03597 1.21741 0.94017 1.02112 0.97196 1.21045 0.78808 0.96307 0.99876 0.91539 1.45687 1.07273 1.73575 1.08770 1.17442 0.85803 0.75512 0.84030 1.90780 1.70453 1.51398 1.32660 1.21397 0.93869 1.12986 0.94538 1.22036 0.81690 1.02425 0.95251 1.21136 1.03089 0.81738 0.87987 1.86047 1.83184 1.26537 1.27841 1.19179 0.95173 0.94528 0.83110 1.20626 1.05950 0.93866 0.97635 1.20944 0.95028 1.00137 0.91427 1.20280 1.04808 0.93547 0.97234 1.25165 0.89674 1.06936 0.96795 1.86555 1.22110 1.44662 1.82390 0.94161 0.87709 0.76171 0.74890 1.21011 0.96972 0.95912 0.95474 1.21410 1.06775 0.99562 0.94676 1.83793 1.28018 1.70058 1.25462 1.24919 1.01658 1.02400 0.78887 1.23264 0.91314 1.07046 0.99777 1.21831 0.94608 0.96272 1.03153 1.21410 0.95465 1.01617 0.95557 0.91899 0.85352 0.92347 0.92359 0.90038 0.89672 0.88197 0.74595 0.87657 0.88077 0.84862 0.84228 0.85552 0.76608 1.21256 1.23048 0.83401 0.83523 0.73252 0.78914 0.89123 0.92939 0.92526 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.17 10.47 -51.42 -0.54 -1.71 16 3 C 0.46 2.04 7.26 71.24 0.52 2.56 16 4 O -0.54 -5.89 15.73 21.96 0.35 -5.54 16 5 C -0.07 0.17 2.63 -11.54 -0.03 0.14 16 6 H 0.14 -1.00 8.14 -2.39 -0.02 -1.02 16 7 C -0.10 0.24 4.49 30.60 0.14 0.38 16 8 C -0.11 0.75 5.39 30.59 0.16 0.92 16 9 C 0.14 -0.25 2.45 44.99 0.11 -0.14 16 10 H 0.07 0.27 7.58 -2.39 -0.02 0.25 16 11 N -0.70 1.59 5.07 -445.84 -2.26 -0.67 16 12 C 0.58 2.98 7.78 86.65 0.67 3.65 16 13 O -0.57 -7.19 14.51 -4.06 -0.06 -7.25 16 14 C -0.22 -0.62 6.31 -18.99 -0.12 -0.74 16 15 C 0.04 0.18 7.00 25.26 0.18 0.36 16 16 C 0.13 0.62 4.74 71.23 0.34 0.96 16 17 O -0.32 -2.89 10.12 -92.42 -0.94 -3.83 16 18 C 0.13 0.92 6.69 22.51 0.15 1.07 16 19 C -0.16 -1.04 9.99 22.37 0.22 -0.82 16 20 C -0.06 -0.25 9.61 22.26 0.21 -0.03 16 21 C -0.16 -0.43 5.39 -19.85 -0.11 -0.54 16 22 C -0.08 -0.09 2.82 71.24 0.20 0.11 16 23 O -0.55 -2.45 12.76 -148.98 -1.90 -4.35 16 24 Si 0.76 -0.31 29.78 68.60 2.04 1.74 16 25 C -0.08 -0.14 8.66 22.25 0.19 0.06 16 26 C -0.21 -0.77 9.04 22.37 0.20 -0.57 16 27 O -0.18 -0.34 10.52 4.44 0.05 -0.30 16 28 C -0.01 0.07 12.03 66.89 0.80 0.87 16 29 C -0.20 0.94 10.60 23.65 0.25 1.20 16 30 C -0.12 0.20 5.49 30.58 0.17 0.37 16 31 C -0.10 0.14 5.13 30.58 0.16 0.30 16 32 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 33 H 0.13 -0.76 8.14 -2.38 -0.02 -0.78 16 34 H 0.06 0.05 8.13 -2.39 -0.02 0.03 16 35 H 0.06 0.10 8.10 -2.39 -0.02 0.08 16 36 H 0.08 -0.18 8.10 -2.39 -0.02 -0.19 16 37 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 38 H 0.10 -1.12 8.14 -2.39 -0.02 -1.14 16 39 H 0.42 -3.67 7.77 -92.71 -0.72 -4.39 16 40 H 0.11 0.63 6.00 -2.38 -0.01 0.62 16 41 H 0.10 -0.02 7.67 -2.39 -0.02 -0.04 16 42 H 0.13 0.68 8.06 -2.91 -0.02 0.66 16 43 H 0.14 0.32 8.06 -2.91 -0.02 0.30 16 44 H 0.13 -0.11 7.96 -2.39 -0.02 -0.13 16 45 H 0.38 -0.18 8.70 -74.06 -0.64 -0.83 16 46 H -0.29 -1.09 7.11 99.48 0.71 -0.39 16 47 H -0.30 -2.15 7.11 99.48 0.71 -1.44 16 48 H 0.15 -0.41 4.87 -2.91 -0.01 -0.42 16 49 H 0.15 -0.03 6.30 -2.91 -0.02 -0.05 16 50 H 0.25 -3.56 8.06 -2.91 -0.02 -3.59 16 51 H 0.19 -2.39 7.74 -2.91 -0.02 -2.41 16 52 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 53 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 54 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 55 H 0.09 -0.16 8.11 -2.39 -0.02 -0.18 16 Total: 0.00 -28.58 453.57 1.98 -26.60 By element: Atomic # 1 Polarization: -15.58 SS G_CDS: -0.38 Total: -15.96 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 5.62 Total: 11.28 kcal Atomic # 7 Polarization: 1.59 SS G_CDS: -2.26 Total: -0.67 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -3.04 Total: -22.99 kcal Atomic # 14 Polarization: -0.31 SS G_CDS: 2.04 Total: 1.74 kcal Total: -28.58 1.98 -26.60 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475160_4549634.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.834 kcal (2) G-P(sol) polarization free energy of solvation -28.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds