Wall clock time and date at job start Tue Mar 9 2021 12:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 116.99891 * 2 1 4 4 O 1.20824 * 120.00038 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00067 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.46748 * 59.99642 * 5 3 2 7 7 C 1.52996 * 109.47158 * 179.97438 * 5 3 2 8 8 C 1.52991 * 109.47278 * 179.97438 * 7 5 3 9 9 C 1.53007 * 109.47318 * 300.00296 * 8 7 5 10 10 H 1.08993 * 109.47006 * 300.00105 * 9 8 7 11 11 N 1.46499 * 109.47026 * 179.97438 * 9 8 7 12 12 C 1.34779 * 119.99550 * 155.00233 * 11 9 8 13 13 O 1.21283 * 120.00188 * 359.97438 * 12 11 9 14 14 C 1.50697 * 119.99802 * 180.02562 * 12 11 9 15 15 O 1.42898 * 109.47354 * 180.02562 * 14 12 11 16 16 C 1.35974 * 117.00368 * 179.97438 * 15 14 12 17 17 C 1.38679 * 120.00298 * 179.97438 * 16 15 14 18 18 C 1.50701 * 119.99795 * 359.97438 * 17 16 15 19 19 O 1.42896 * 109.47417 * 74.99762 * 18 17 16 20 20 Si 1.86301 * 109.47149 * 194.99778 * 18 17 16 21 21 C 1.38148 * 120.00475 * 180.25130 * 17 16 15 22 22 C 1.38688 * 119.99609 * 359.49691 * 21 17 16 23 23 O 1.35988 * 119.99983 * 180.25106 * 22 21 17 24 24 C 1.42897 * 116.99749 * 180.27550 * 23 22 21 25 25 C 1.38721 * 119.99792 * 0.52732 * 22 21 17 26 26 C 1.38112 * 120.00136 * 359.72413 * 25 22 21 27 27 C 1.52996 * 109.46877 * 59.99869 * 9 8 7 28 28 C 1.52994 * 109.46946 * 299.99916 * 5 3 2 29 29 H 1.09002 * 109.47470 * 299.99795 * 1 2 3 30 30 H 1.08994 * 109.47046 * 60.00475 * 1 2 3 31 31 H 1.09007 * 109.46918 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46774 * 59.99777 * 7 5 3 33 33 H 1.09001 * 109.47599 * 300.00233 * 7 5 3 34 34 H 1.09005 * 109.47315 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.47343 * 60.00195 * 8 7 5 36 36 H 0.96996 * 120.00558 * 334.99920 * 11 9 8 37 37 H 1.08998 * 109.47276 * 59.99383 * 14 12 11 38 38 H 1.09001 * 109.47217 * 299.99678 * 14 12 11 39 39 H 1.09002 * 109.47060 * 314.99788 * 18 17 16 40 40 H 0.96703 * 114.00193 * 300.00261 * 19 18 17 41 41 H 1.48503 * 110.00152 * 59.99805 * 20 18 17 42 42 H 1.48498 * 110.00118 * 181.32031 * 20 18 17 43 43 H 1.07999 * 120.00627 * 179.72951 * 21 17 16 44 44 H 1.08998 * 109.47414 * 300.00083 * 24 23 22 45 45 H 1.08993 * 109.47076 * 60.00229 * 24 23 22 46 46 H 1.08998 * 109.46989 * 179.97438 * 24 23 22 47 47 H 1.07998 * 119.99956 * 179.74700 * 25 22 21 48 48 H 1.07994 * 119.99934 * 180.02562 * 26 25 22 49 49 H 1.09003 * 109.47467 * 59.99860 * 27 9 8 50 50 H 1.09001 * 109.47288 * 180.02562 * 27 9 8 51 51 H 1.09003 * 109.47173 * 299.99465 * 28 5 3 52 52 H 1.08996 * 109.47621 * 59.99935 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8892 7 6 4.0001 2.7421 -0.0002 8 6 5.5279 2.8223 0.0011 9 6 6.0740 2.1296 1.2513 10 1 5.6835 2.6243 2.1405 11 7 7.5370 2.2059 1.2521 12 6 8.2145 2.1403 2.4154 13 8 7.6130 2.0187 3.4615 14 6 9.7194 2.2193 2.4164 15 8 10.2004 2.1273 3.7588 16 6 11.5473 2.1819 3.9371 17 6 12.0817 2.0989 5.2141 18 6 11.1695 1.9487 6.4043 19 8 10.6710 0.6105 6.4566 20 14 12.1180 2.3194 7.9643 21 6 13.4498 2.1597 5.3958 22 6 14.2895 2.2932 4.3001 23 8 15.6365 2.3479 4.4784 24 6 16.4408 2.4920 3.3061 25 6 13.7549 2.3768 3.0228 26 6 12.3869 2.3212 2.8417 27 6 5.6402 0.6624 1.2520 28 6 4.1128 0.5817 1.2502 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.6099 3.2368 0.8894 33 1 3.6107 3.2357 -0.8906 34 1 5.8369 3.8676 0.0010 35 1 5.9185 2.3275 -0.8883 36 1 8.0181 2.3035 0.4156 37 1 10.0337 3.1681 1.9816 38 1 10.1268 1.3973 1.8277 39 1 10.3350 2.6439 6.3125 40 1 10.1657 0.3482 5.6749 41 1 12.6418 3.7084 7.9225 42 1 11.2381 2.1438 9.1476 43 1 13.8657 2.0994 6.3907 44 1 16.2675 1.6466 2.6404 45 1 16.1752 3.4173 2.7949 46 1 17.4930 2.5227 3.5888 47 1 14.4086 2.4848 2.1699 48 1 11.9708 2.3859 1.8472 49 1 6.0307 0.1676 0.3626 50 1 6.0289 0.1690 2.1428 51 1 3.7228 1.0760 2.1399 52 1 3.8038 -0.4636 1.2503 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475160_4974302.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:42 Heat of formation + Delta-G solvation = -203.317938 kcal Electronic energy + Delta-G solvation = -34883.938348 eV Core-core repulsion = 30008.899243 eV Total energy + Delta-G solvation = -4875.039105 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.181 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.93033 -41.76438 -41.00021 -39.97698 -39.02122 -38.08741 -37.56084 -36.92371 -35.42144 -32.82350 -31.98013 -31.80334 -30.79628 -29.30036 -28.38090 -27.90039 -26.59044 -24.88616 -23.85683 -23.60127 -22.40448 -22.02820 -21.61013 -20.84306 -19.52924 -18.80097 -18.71904 -18.50750 -18.05510 -17.84811 -17.53994 -17.45211 -17.34749 -17.10888 -16.59807 -16.10479 -15.87760 -15.72603 -15.45560 -15.36668 -15.15063 -15.09116 -14.95479 -14.50531 -14.28477 -14.19886 -14.08107 -13.97427 -13.73254 -13.52493 -13.41773 -13.31882 -13.05920 -13.00989 -12.70746 -12.51862 -12.40497 -12.30571 -12.21226 -12.02793 -11.88022 -11.60330 -11.50644 -11.43869 -11.38497 -11.30192 -11.21897 -10.93779 -10.16537 -10.09057 -8.81342 -4.94257 0.07173 0.34132 1.06751 1.33056 1.45024 1.45325 1.57450 1.70291 1.90888 2.35828 2.55108 2.58366 3.43484 3.47986 3.53370 3.58397 3.67752 3.75866 3.85773 3.90049 3.96692 4.03377 4.09651 4.11429 4.14302 4.16478 4.21473 4.24824 4.25861 4.28096 4.28476 4.31143 4.41135 4.45856 4.46542 4.59592 4.66088 4.71269 4.76464 4.80720 4.90702 4.97907 5.02532 5.06694 5.08611 5.13100 5.21546 5.22711 5.25487 5.33153 5.41635 5.45278 6.14404 6.42949 6.48810 6.52125 6.62455 7.14741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.460 3.540 4 O -0.541 6.541 5 C -0.074 4.074 6 H 0.141 0.859 7 C -0.101 4.101 8 C -0.112 4.112 9 C 0.143 3.857 10 H 0.060 0.940 11 N -0.704 5.704 12 C 0.513 3.487 13 O -0.571 6.571 14 C 0.037 3.963 15 O -0.317 6.317 16 C 0.090 3.910 17 C -0.119 4.119 18 C -0.081 4.081 19 O -0.545 6.545 20 Si 0.810 3.190 21 C -0.119 4.119 22 C 0.090 3.910 23 O -0.333 6.333 24 C 0.017 3.983 25 C -0.161 4.161 26 C -0.159 4.159 27 C -0.120 4.120 28 C -0.104 4.104 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.129 0.871 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.422 0.578 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.061 0.939 40 H 0.372 0.628 41 H -0.265 1.265 42 H -0.295 1.295 43 H 0.151 0.849 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.114 0.886 47 H 0.162 0.838 48 H 0.169 0.831 49 H 0.096 0.904 50 H 0.054 0.946 51 H 0.053 0.947 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.765 -1.791 -10.994 12.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.305 3.695 4 O -0.431 6.431 5 C -0.093 4.093 6 H 0.158 0.842 7 C -0.139 4.139 8 C -0.150 4.150 9 C 0.039 3.961 10 H 0.078 0.922 11 N -0.358 5.358 12 C 0.299 3.701 13 O -0.449 6.449 14 C -0.041 4.041 15 O -0.231 6.231 16 C 0.045 3.955 17 C -0.120 4.120 18 C -0.188 4.188 19 O -0.351 6.351 20 Si 0.712 3.288 21 C -0.137 4.137 22 C 0.045 3.955 23 O -0.248 6.248 24 C -0.077 4.077 25 C -0.180 4.180 26 C -0.177 4.177 27 C -0.159 4.159 28 C -0.142 4.142 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.147 0.853 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.122 0.878 36 H 0.261 0.739 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.079 0.921 40 H 0.220 0.780 41 H -0.190 1.190 42 H -0.223 1.223 43 H 0.168 0.832 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.132 0.868 47 H 0.179 0.821 48 H 0.186 0.814 49 H 0.114 0.886 50 H 0.073 0.927 51 H 0.071 0.929 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.423 -1.107 -8.680 10.294 hybrid contribution -1.771 0.666 -1.518 2.426 sum 3.652 -0.442 -10.198 10.841 Atomic orbital electron populations 1.23514 0.75176 1.05605 1.02333 1.86507 1.24648 1.33168 1.83546 1.24435 0.93160 0.80969 0.70935 1.90674 1.68206 1.37489 1.46747 1.21261 0.84924 0.99844 1.03233 0.84157 1.21373 0.95881 0.93194 1.03432 1.21742 0.93808 1.02144 0.97299 1.21017 0.79062 0.96422 0.99623 0.92175 1.45697 1.07164 1.74077 1.08849 1.20535 0.89719 0.75853 0.84014 1.90780 1.71108 1.49634 1.33350 1.22736 0.91009 1.06668 0.83663 1.86084 1.19123 1.88860 1.28991 1.18794 0.82231 1.00635 0.93852 1.19442 0.93700 1.05401 0.93472 1.25494 0.99338 0.86865 1.07115 1.86660 1.74056 1.28275 1.46109 0.92237 0.84199 0.81189 0.71208 1.20179 0.90494 1.04199 0.98844 1.18984 0.83550 0.99151 0.93814 1.86088 1.14190 1.88284 1.36208 1.23354 0.95471 1.02111 0.86785 1.21426 0.96082 1.03995 0.96471 1.21376 0.93278 1.04165 0.98883 1.21840 0.94416 0.96138 1.03461 1.21428 0.95791 1.01642 0.95388 0.92424 0.91914 0.85280 0.92687 0.90116 0.89743 0.87774 0.73929 0.86043 0.85466 0.92136 0.77978 1.19011 1.22256 0.83152 0.91355 0.91547 0.86775 0.82085 0.81410 0.88553 0.92701 0.92864 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.36 -0.99 10.47 -51.44 -0.54 -1.52 16 3 C 0.46 1.81 7.26 71.24 0.52 2.33 16 4 O -0.54 -5.81 15.73 21.97 0.35 -5.47 16 5 C -0.07 0.24 2.63 -11.54 -0.03 0.21 16 6 H 0.14 -1.23 8.14 -2.39 -0.02 -1.25 16 7 C -0.10 0.33 4.49 30.59 0.14 0.47 16 8 C -0.11 0.96 5.39 30.59 0.16 1.12 16 9 C 0.14 -0.57 2.46 44.99 0.11 -0.46 16 10 H 0.06 0.20 7.58 -2.39 -0.02 0.18 16 11 N -0.70 4.93 5.08 -442.53 -2.25 2.68 16 12 C 0.51 0.20 7.87 87.66 0.69 0.89 16 13 O -0.57 -7.09 16.16 16.00 0.26 -6.83 16 14 C 0.04 -0.20 5.22 71.24 0.37 0.17 16 15 O -0.32 -1.23 8.56 -74.22 -0.64 -1.87 16 16 C 0.09 0.26 6.62 22.49 0.15 0.41 16 17 C -0.12 -0.69 5.28 -19.78 -0.10 -0.80 16 18 C -0.08 -0.66 2.33 71.24 0.17 -0.50 16 19 O -0.54 -5.38 12.65 -148.98 -1.89 -7.27 16 20 Si 0.81 4.49 30.17 68.60 2.07 6.56 16 21 C -0.12 -0.51 8.59 22.36 0.19 -0.32 16 22 C 0.09 0.21 6.69 22.49 0.15 0.36 16 23 O -0.33 -0.63 10.50 -93.42 -0.98 -1.61 16 24 C 0.02 -0.10 9.81 113.37 1.11 1.01 16 25 C -0.16 0.39 9.03 22.36 0.20 0.59 16 26 C -0.16 0.49 9.03 22.36 0.20 0.69 16 27 C -0.12 0.49 5.49 30.58 0.17 0.66 16 28 C -0.10 0.27 5.13 30.58 0.16 0.43 16 29 H 0.06 0.04 8.13 -2.39 -0.02 0.02 16 30 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 31 H 0.13 -0.82 8.14 -2.38 -0.02 -0.83 16 32 H 0.05 0.08 8.10 -2.38 -0.02 0.06 16 33 H 0.08 -0.23 8.10 -2.39 -0.02 -0.25 16 34 H 0.08 -0.75 8.14 -2.38 -0.02 -0.77 16 35 H 0.10 -1.43 8.14 -2.38 -0.02 -1.45 16 36 H 0.42 -6.42 8.60 -92.71 -0.80 -7.22 16 37 H 0.12 -1.36 7.66 -2.39 -0.02 -1.38 16 38 H 0.13 -1.54 7.66 -2.39 -0.02 -1.56 16 39 H 0.06 0.66 7.82 -2.39 -0.02 0.64 16 40 H 0.37 2.71 8.60 -74.05 -0.64 2.07 16 41 H -0.26 -1.98 7.11 99.48 0.71 -1.27 16 42 H -0.29 -3.53 7.11 99.48 0.71 -2.82 16 43 H 0.15 0.24 5.12 -2.91 -0.01 0.23 16 44 H 0.07 -0.59 7.66 -2.39 -0.02 -0.61 16 45 H 0.07 -0.56 7.66 -2.39 -0.02 -0.58 16 46 H 0.11 -1.00 8.14 -2.39 -0.02 -1.01 16 47 H 0.16 -1.33 6.29 -2.91 -0.02 -1.35 16 48 H 0.17 -1.85 6.29 -2.91 -0.02 -1.86 16 49 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 50 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 51 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 52 H 0.09 -0.28 8.11 -2.39 -0.02 -0.30 16 Total: 0.00 -30.48 424.06 1.50 -28.98 By element: Atomic # 1 Polarization: -21.69 SS G_CDS: -0.43 Total: -22.12 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 5.55 Total: 8.46 kcal Atomic # 7 Polarization: 4.93 SS G_CDS: -2.25 Total: 2.68 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -3.44 Total: -24.56 kcal Atomic # 14 Polarization: 4.49 SS G_CDS: 2.07 Total: 6.56 kcal Total: -30.48 1.50 -28.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475160_4974302.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.341 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds