Wall clock time and date at job start Tue Mar 9 2021 12:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34233 * 117.00553 * 2 1 4 4 O 1.20826 * 119.99840 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00254 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.47531 * 59.99327 * 5 3 2 7 7 C 1.53001 * 109.47107 * 179.97438 * 5 3 2 8 8 C 1.53004 * 109.47073 * 179.97438 * 7 5 3 9 9 C 1.53005 * 109.46830 * 299.99564 * 8 7 5 10 10 H 1.08997 * 109.47304 * 300.00564 * 9 8 7 11 11 N 1.46497 * 109.47081 * 180.02562 * 9 8 7 12 12 C 1.34773 * 120.00175 * 154.99856 * 11 9 8 13 13 O 1.21651 * 120.00168 * 0.02562 * 12 11 9 14 14 C 1.46988 * 120.00186 * 180.02562 * 12 11 9 15 15 C 1.35814 * 125.14290 * 179.97438 * 14 12 11 16 16 C 1.46254 * 106.09122 * 180.02562 * 15 14 12 17 17 C 1.39779 * 134.14873 * 180.02562 * 16 15 14 18 18 C 1.50696 * 120.09578 * 359.97438 * 17 16 15 19 19 O 1.42899 * 109.47143 * 75.02683 * 18 17 16 20 20 Si 1.86307 * 109.46948 * 195.02292 * 18 17 16 21 21 C 1.36632 * 119.80744 * 180.02562 * 17 16 15 22 22 C 1.38773 * 120.49778 * 359.97438 * 21 17 16 23 23 C 1.38261 * 120.67698 * 0.26355 * 22 21 17 24 24 O 1.35966 * 120.12120 * 179.72307 * 23 22 21 25 25 C 1.42900 * 116.99851 * 359.97438 * 24 23 22 26 26 C 1.39452 * 119.75536 * 359.48297 * 23 22 21 27 27 O 1.34775 * 133.24200 * 180.17635 * 26 23 22 28 28 C 1.53001 * 109.46936 * 60.00352 * 9 8 7 29 29 C 1.52995 * 109.47057 * 299.99717 * 28 9 8 30 30 H 1.09003 * 109.47121 * 60.00022 * 1 2 3 31 31 H 1.08998 * 109.47563 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46946 * 300.00650 * 1 2 3 33 33 H 1.08997 * 109.46951 * 59.99483 * 7 5 3 34 34 H 1.08998 * 109.47176 * 299.99505 * 7 5 3 35 35 H 1.09001 * 109.47045 * 180.02562 * 8 7 5 36 36 H 1.08990 * 109.47303 * 59.99750 * 8 7 5 37 37 H 0.97005 * 120.00203 * 335.00485 * 11 9 8 38 38 H 1.08007 * 126.95403 * 0.03901 * 15 14 12 39 39 H 1.09003 * 109.47024 * 315.02281 * 18 17 16 40 40 H 0.96696 * 113.99931 * 60.00033 * 19 18 17 41 41 H 1.48502 * 109.99851 * 58.68359 * 20 18 17 42 42 H 1.48496 * 109.99947 * 179.97438 * 20 18 17 43 43 H 1.08002 * 119.74798 * 179.97438 * 21 17 16 44 44 H 1.08002 * 119.65897 * 179.97438 * 22 21 17 45 45 H 1.09003 * 109.47118 * 300.00367 * 25 24 23 46 46 H 1.08995 * 109.46982 * 60.00303 * 25 24 23 47 47 H 1.08998 * 109.47193 * 180.02562 * 25 24 23 48 48 H 1.08997 * 109.46951 * 59.99996 * 28 9 8 49 49 H 1.09007 * 109.46950 * 179.97438 * 28 9 8 50 50 H 1.08997 * 109.47468 * 299.99962 * 29 28 9 51 51 H 1.09004 * 109.47436 * 180.02562 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7807 -0.8908 7 6 4.0002 2.7420 -0.0011 8 6 5.5281 2.8219 -0.0011 9 6 6.0750 2.1289 1.2486 10 1 5.6852 2.6233 2.1383 11 7 7.5380 2.2060 1.2490 12 6 8.2159 2.1402 2.4119 13 8 7.6131 2.0163 3.4613 14 6 9.6837 2.2181 2.4124 15 6 10.4692 2.1635 3.5191 16 6 11.8476 2.2787 3.0439 17 6 13.0962 2.2901 3.6722 18 6 13.1891 2.1642 5.1710 19 8 12.9404 0.8094 5.5515 20 14 14.8943 2.6635 5.7315 21 6 14.2320 2.4169 2.9235 22 6 14.1561 2.5340 1.5428 23 6 12.9316 2.5300 0.9008 24 8 12.8700 2.6511 -0.4520 25 6 14.1109 2.7795 -1.1490 26 6 11.7601 2.3963 1.6455 27 8 10.4546 2.3553 1.3135 28 6 5.6411 0.6617 1.2491 29 6 4.1133 0.5817 1.2490 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 3.6107 3.2363 0.8888 34 1 3.6102 3.2359 -0.8911 35 1 5.8372 3.8672 -0.0010 36 1 5.9179 2.3275 -0.8907 37 1 8.0187 2.3044 0.4123 38 1 10.1420 2.0564 4.5428 39 1 12.4486 2.8143 5.6369 40 1 13.5629 0.1739 5.1726 41 1 15.1775 4.0602 5.3140 42 1 14.9988 2.5442 7.2080 43 1 15.1963 2.4261 3.4099 44 1 15.0626 2.6340 0.9643 45 1 14.6340 3.6694 -0.7987 46 1 14.7257 1.8993 -0.9614 47 1 13.9195 2.8683 -2.2183 48 1 6.0310 0.1672 0.3594 49 1 6.0311 0.1678 2.1392 50 1 3.7234 1.0761 2.1387 51 1 3.8041 -0.4636 1.2498 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14475160_6672420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:08 Heat of formation + Delta-G solvation = -158.643111 kcal Electronic energy + Delta-G solvation = -36121.227136 eV Core-core repulsion = 31147.210616 eV Total energy + Delta-G solvation = -4974.016521 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.165 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.77677 -41.88033 -41.14447 -40.52264 -39.11631 -39.05093 -37.56939 -37.00240 -35.56660 -33.67048 -32.13584 -31.92142 -31.59813 -30.65280 -28.71801 -28.36670 -26.34977 -25.67869 -24.08420 -24.00123 -23.87698 -22.12650 -21.84322 -21.74982 -20.98065 -19.74152 -19.01914 -18.66872 -18.54526 -17.94985 -17.82242 -17.74530 -17.47872 -17.36007 -16.93655 -16.59385 -16.21940 -16.08575 -15.88366 -15.74791 -15.22365 -15.20659 -14.96475 -14.75717 -14.55594 -14.50560 -14.29513 -14.15922 -14.01183 -13.74801 -13.56974 -13.41015 -13.34057 -13.27090 -13.04189 -12.76611 -12.45565 -12.40369 -12.28541 -12.23650 -12.08894 -11.91236 -11.86824 -11.69922 -11.63310 -11.51164 -11.29851 -11.03134 -10.44681 -10.34353 -9.83899 -9.00956 -5.00509 -0.69347 0.09684 0.59161 1.07770 1.14833 1.30184 1.67831 1.68337 1.85639 1.87835 2.00399 2.14028 2.39514 3.14806 3.40945 3.45225 3.52989 3.62393 3.64894 3.68591 3.80604 3.86281 3.86986 3.97748 4.01861 4.15515 4.17054 4.24404 4.25751 4.26894 4.29153 4.34661 4.39376 4.40680 4.44544 4.45365 4.54572 4.66813 4.74131 4.78570 4.81196 4.85514 4.86992 5.00966 5.03872 5.04968 5.06384 5.12676 5.19964 5.21776 5.29749 5.34053 5.39399 5.57197 6.18166 6.28840 6.63616 6.78947 6.79919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.463 3.537 4 O -0.540 6.540 5 C -0.076 4.076 6 H 0.138 0.862 7 C -0.098 4.098 8 C -0.115 4.115 9 C 0.140 3.860 10 H 0.075 0.925 11 N -0.697 5.697 12 C 0.603 3.397 13 O -0.545 6.545 14 C -0.031 4.031 15 C -0.117 4.117 16 C -0.099 4.099 17 C -0.109 4.109 18 C -0.081 4.081 19 O -0.555 6.555 20 Si 0.796 3.204 21 C -0.079 4.079 22 C -0.165 4.165 23 C 0.137 3.863 24 O -0.333 6.333 25 C 0.013 3.987 26 C 0.021 3.979 27 O -0.179 6.179 28 C -0.122 4.122 29 C -0.102 4.102 30 H 0.061 0.939 31 H 0.129 0.871 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.418 0.582 38 H 0.168 0.832 39 H 0.096 0.904 40 H 0.396 0.604 41 H -0.280 1.280 42 H -0.301 1.301 43 H 0.176 0.824 44 H 0.184 0.816 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.115 0.885 48 H 0.091 0.909 49 H 0.060 0.940 50 H 0.060 0.940 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.483 -2.933 -6.621 11.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.307 3.693 4 O -0.430 6.430 5 C -0.095 4.095 6 H 0.155 0.845 7 C -0.136 4.136 8 C -0.153 4.153 9 C 0.036 3.964 10 H 0.093 0.907 11 N -0.347 5.347 12 C 0.388 3.612 13 O -0.424 6.424 14 C -0.082 4.082 15 C -0.138 4.138 16 C -0.100 4.100 17 C -0.110 4.110 18 C -0.189 4.189 19 O -0.363 6.363 20 Si 0.701 3.299 21 C -0.096 4.096 22 C -0.184 4.184 23 C 0.091 3.909 24 O -0.247 6.247 25 C -0.080 4.080 26 C -0.028 4.028 27 O -0.081 6.081 28 C -0.161 4.161 29 C -0.140 4.140 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.256 0.744 38 H 0.185 0.815 39 H 0.114 0.886 40 H 0.246 0.754 41 H -0.207 1.207 42 H -0.230 1.230 43 H 0.192 0.808 44 H 0.201 0.799 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.133 0.867 48 H 0.109 0.891 49 H 0.078 0.922 50 H 0.079 0.921 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.492 -1.890 -5.531 9.503 hybrid contribution -1.073 0.446 -0.059 1.164 sum 6.419 -1.444 -5.590 8.634 Atomic orbital electron populations 1.23517 0.75139 1.05602 1.02364 1.86506 1.24670 1.33118 1.83545 1.24337 0.92980 0.80999 0.70966 1.90674 1.68149 1.37447 1.46709 1.21258 0.85149 0.99765 1.03279 0.84451 1.21351 0.95115 0.93359 1.03761 1.21757 0.94397 1.02043 0.97092 1.21230 0.77685 0.97106 1.00393 0.90681 1.45900 1.08121 1.72178 1.08546 1.16667 0.82975 0.76800 0.84743 1.90897 1.67598 1.51405 1.32514 1.21943 0.91692 1.09183 0.85356 1.22841 0.90346 1.00961 0.99673 1.19598 0.94110 1.04971 0.91355 1.19681 0.90894 1.03479 0.96915 1.25359 1.13918 0.87861 0.91756 1.86503 1.60002 1.15853 1.73936 0.93859 0.76739 0.81377 0.77964 1.20796 0.98042 0.97660 0.93087 1.21433 0.95824 1.05393 0.95718 1.17993 0.89717 0.99746 0.83458 1.86145 1.35775 1.87605 1.15186 1.23496 0.83795 1.03011 0.97727 1.19220 0.82340 1.08041 0.93154 1.84006 1.15145 1.75909 1.33049 1.21868 0.94981 0.95619 1.03595 1.21427 0.95072 1.01899 0.95586 0.91971 0.85290 0.92304 0.92052 0.90041 0.89850 0.88360 0.74422 0.81481 0.88615 0.75424 1.20681 1.22950 0.80751 0.79907 0.90738 0.90386 0.86685 0.89086 0.92169 0.92114 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.19 10.47 -51.45 -0.54 -1.73 16 3 C 0.46 2.15 7.25 71.23 0.52 2.67 16 4 O -0.54 -6.07 15.73 21.96 0.35 -5.73 16 5 C -0.08 0.13 2.63 -11.54 -0.03 0.10 16 6 H 0.14 -0.90 8.14 -2.39 -0.02 -0.92 16 7 C -0.10 0.15 4.49 30.60 0.14 0.28 16 8 C -0.12 0.54 5.39 30.60 0.16 0.70 16 9 C 0.14 -0.03 2.45 44.99 0.11 0.08 16 10 H 0.07 0.33 7.58 -2.39 -0.02 0.32 16 11 N -0.70 -0.87 5.07 -446.22 -2.26 -3.13 16 12 C 0.60 4.92 7.76 86.54 0.67 5.59 16 13 O -0.54 -7.94 16.49 -4.19 -0.07 -8.01 16 14 C -0.03 -0.26 7.07 24.00 0.17 -0.09 16 15 C -0.12 -1.04 10.68 23.79 0.25 -0.78 16 16 C -0.10 -0.65 6.16 -20.24 -0.12 -0.77 16 17 C -0.11 -0.12 5.26 -19.87 -0.10 -0.23 16 18 C -0.08 -0.04 2.71 71.23 0.19 0.16 16 19 O -0.55 -0.80 12.88 -148.98 -1.92 -2.72 16 20 Si 0.80 -3.05 29.93 68.60 2.05 -1.00 16 21 C -0.08 0.37 8.62 22.02 0.19 0.56 16 22 C -0.17 0.73 9.03 22.40 0.20 0.93 16 23 C 0.14 0.30 6.70 22.57 0.15 0.45 16 24 O -0.33 -0.50 10.50 -93.17 -0.98 -1.48 16 25 C 0.01 -0.11 9.81 113.37 1.11 1.00 16 26 C 0.02 0.14 7.35 23.14 0.17 0.31 16 27 O -0.18 -1.41 10.28 -13.40 -0.14 -1.55 16 28 C -0.12 0.17 5.50 30.59 0.17 0.34 16 29 C -0.10 0.16 5.13 30.59 0.16 0.31 16 30 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 31 H 0.13 -0.76 8.14 -2.39 -0.02 -0.78 16 32 H 0.06 0.05 8.13 -2.39 -0.02 0.03 16 33 H 0.06 0.13 8.10 -2.39 -0.02 0.11 16 34 H 0.08 -0.09 8.10 -2.39 -0.02 -0.10 16 35 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 36 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 37 H 0.42 -1.17 8.32 -92.70 -0.77 -1.95 16 38 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 39 H 0.10 0.32 7.96 -2.39 -0.02 0.31 16 40 H 0.40 -3.01 8.70 -74.06 -0.64 -3.66 16 41 H -0.28 -0.13 7.11 99.48 0.71 0.58 16 42 H -0.30 -1.32 7.11 99.48 0.71 -0.62 16 43 H 0.18 -2.13 5.07 -2.91 -0.01 -2.14 16 44 H 0.18 -2.18 6.26 -2.91 -0.02 -2.20 16 45 H 0.07 -0.81 7.66 -2.39 -0.02 -0.83 16 46 H 0.08 -0.89 7.66 -2.39 -0.02 -0.91 16 47 H 0.11 -1.18 8.14 -2.39 -0.02 -1.20 16 48 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 49 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 50 H 0.06 0.07 8.14 -2.39 -0.02 0.06 16 51 H 0.09 -0.23 8.11 -2.38 -0.02 -0.24 16 Total: 0.00 -28.22 423.09 1.41 -26.81 By element: Atomic # 1 Polarization: -13.89 SS G_CDS: -0.38 Total: -14.27 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 5.31 Total: 12.81 kcal Atomic # 7 Polarization: -0.87 SS G_CDS: -2.26 Total: -3.13 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -3.30 Total: -21.21 kcal Atomic # 14 Polarization: -3.05 SS G_CDS: 2.05 Total: -1.00 kcal Total: -28.22 1.41 -26.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475160_6672420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.837 kcal (2) G-P(sol) polarization free energy of solvation -28.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds