Wall clock time and date at job start Tue Mar 9 2021 12:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99703 * 2 1 4 4 O 1.20826 * 120.00138 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00132 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47277 * 59.99650 * 5 3 2 7 7 C 1.53001 * 109.47656 * 180.02562 * 5 3 2 8 8 C 1.52996 * 109.47384 * 180.02562 * 7 5 3 9 9 C 1.53004 * 109.47019 * 300.00089 * 8 7 5 10 10 H 1.09003 * 109.47137 * 300.00189 * 9 8 7 11 11 N 1.46503 * 109.47248 * 180.02562 * 9 8 7 12 12 C 1.34771 * 120.00186 * 155.00065 * 11 9 8 13 13 O 1.21703 * 120.00145 * 359.97438 * 12 11 9 14 14 C 1.46583 * 119.99885 * 180.02562 * 12 11 9 15 15 C 1.36653 * 125.45581 * 179.97438 * 14 12 11 16 16 C 1.37467 * 113.29204 * 180.02562 * 15 14 12 17 17 C 1.50703 * 122.44454 * 179.72736 * 16 15 14 18 18 C 1.33819 * 115.10672 * 0.02562 * 16 15 14 19 19 C 1.50693 * 124.52439 * 180.02562 * 18 16 15 20 20 O 1.42898 * 109.47131 * 246.54462 * 19 18 16 21 21 Si 1.86300 * 109.47168 * 126.54550 * 19 18 16 22 22 S 1.70618 * 110.95099 * 359.97438 * 18 16 15 23 23 C 1.52997 * 109.47215 * 60.00077 * 9 8 7 24 24 C 1.53004 * 109.46976 * 300.00503 * 5 3 2 25 25 H 1.08999 * 109.46878 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47395 * 299.99825 * 1 2 3 27 27 H 1.09007 * 109.47099 * 59.99996 * 1 2 3 28 28 H 1.09003 * 109.46756 * 59.99934 * 7 5 3 29 29 H 1.09000 * 109.46875 * 300.00243 * 7 5 3 30 30 H 1.08991 * 109.47135 * 180.02562 * 8 7 5 31 31 H 1.08993 * 109.47092 * 59.99673 * 8 7 5 32 32 H 0.97002 * 119.99156 * 334.99355 * 11 9 8 33 33 H 1.07995 * 123.34994 * 0.05073 * 15 14 12 34 34 H 1.09006 * 109.46933 * 95.00409 * 17 16 15 35 35 H 1.09005 * 109.47081 * 214.99532 * 17 16 15 36 36 H 1.08993 * 109.47312 * 335.00239 * 17 16 15 37 37 H 1.09004 * 109.47214 * 6.54826 * 19 18 16 38 38 H 0.96703 * 114.00067 * 179.97438 * 20 19 18 39 39 H 1.48501 * 110.00239 * 298.67820 * 21 19 18 40 40 H 1.48500 * 110.00022 * 60.00334 * 21 19 18 41 41 H 1.08993 * 109.47493 * 60.00051 * 23 9 8 42 42 H 1.08999 * 109.47262 * 180.02562 * 23 9 8 43 43 H 1.08999 * 109.47259 * 299.99387 * 24 5 3 44 44 H 1.09001 * 109.47514 * 59.99960 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9564 0.7807 -0.8891 7 6 4.0001 2.7422 0.0011 8 6 5.5280 2.8223 0.0011 9 6 6.0751 2.1283 1.2500 10 1 5.6854 2.6220 2.1402 11 7 7.5381 2.2055 1.2503 12 6 8.2162 2.1388 2.4131 13 8 7.6132 2.0149 3.4630 14 6 9.6800 2.2166 2.4134 15 6 10.4765 2.1615 3.5224 16 6 11.8171 2.2587 3.2342 17 6 12.8784 2.2273 4.3037 18 6 12.1105 2.3895 1.9351 19 6 13.5074 2.5126 1.3833 20 8 13.6845 3.8144 0.8212 21 14 13.7689 1.2250 0.0624 22 16 10.6921 2.3970 0.9870 23 6 5.6414 0.6611 1.2495 24 6 4.1129 0.5816 1.2502 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.6100 3.2361 0.8911 29 1 3.6107 3.2365 -0.8889 30 1 5.8370 3.8675 0.0019 31 1 5.9176 2.3286 -0.8890 32 1 8.0186 2.3045 0.4135 33 1 10.0911 2.0520 4.5253 34 1 13.2533 1.2096 4.4137 35 1 13.6982 2.8879 4.0215 36 1 12.4514 2.5614 5.2492 37 1 14.2297 2.3618 2.1856 38 1 14.5632 3.9648 0.4465 39 1 13.6189 -0.1343 0.6413 40 1 12.7903 1.4196 -1.0374 41 1 6.0310 0.1673 0.3594 42 1 6.0307 0.1668 2.1395 43 1 3.7228 1.0758 2.1399 44 1 3.8039 -0.4637 1.2502 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14475160_6739946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:13 Heat of formation + Delta-G solvation = -133.501916 kcal Electronic energy + Delta-G solvation = -26977.651781 eV Core-core repulsion = 22987.694376 eV Total energy + Delta-G solvation = -3989.957405 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.78152 -41.00327 -39.85796 -38.90915 -37.59846 -37.37435 -35.34722 -32.74570 -32.00152 -31.16336 -30.02960 -28.63218 -26.80046 -24.87929 -23.93605 -23.86429 -22.02068 -21.67820 -20.96966 -19.97024 -19.12019 -18.58677 -18.53095 -17.89984 -17.60015 -17.33840 -16.99476 -16.20707 -16.16644 -15.83010 -15.35814 -15.31219 -15.08475 -14.96796 -14.67709 -14.42148 -14.29577 -14.19596 -13.97420 -13.72924 -13.39620 -13.38239 -13.17682 -13.05543 -13.02704 -12.73520 -12.61304 -12.46301 -12.31582 -12.28735 -11.85341 -11.77964 -11.67428 -11.48392 -11.31333 -11.03001 -10.67191 -10.19540 -9.77632 -9.48638 -5.23365 -0.67138 0.30949 0.72403 1.02250 1.21418 1.26118 1.50224 1.70177 1.82303 1.98852 2.15789 3.11302 3.42133 3.45192 3.57900 3.68238 3.73757 3.83876 3.97179 4.04236 4.10683 4.11762 4.17458 4.19646 4.23415 4.25873 4.31178 4.32856 4.40026 4.51693 4.59551 4.61185 4.66465 4.74490 4.85804 4.90700 4.91605 4.99698 5.01453 5.14232 5.18358 5.21085 5.31880 5.36652 5.43375 6.33374 6.41887 6.75828 7.08386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.464 3.536 4 O -0.504 6.504 5 C -0.081 4.081 6 H 0.112 0.888 7 C -0.100 4.100 8 C -0.127 4.127 9 C 0.143 3.857 10 H 0.095 0.905 11 N -0.724 5.724 12 C 0.595 3.405 13 O -0.522 6.522 14 C -0.265 4.265 15 C -0.045 4.045 16 C -0.099 4.099 17 C -0.099 4.099 18 C -0.190 4.190 19 C -0.040 4.040 20 O -0.544 6.544 21 Si 0.673 3.327 22 S 0.213 5.787 23 C -0.128 4.128 24 C -0.108 4.108 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.398 0.602 33 H 0.158 0.842 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.387 0.613 39 H -0.249 1.249 40 H -0.240 1.240 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.819 -2.035 -3.518 7.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.306 3.694 4 O -0.391 6.391 5 C -0.100 4.100 6 H 0.130 0.870 7 C -0.138 4.138 8 C -0.165 4.165 9 C 0.039 3.961 10 H 0.113 0.887 11 N -0.375 5.375 12 C 0.381 3.619 13 O -0.400 6.400 14 C -0.386 4.386 15 C -0.078 4.078 16 C -0.112 4.112 17 C -0.158 4.158 18 C -0.309 4.309 19 C -0.152 4.152 20 O -0.351 6.351 21 Si 0.572 3.428 22 S 0.483 5.517 23 C -0.167 4.167 24 C -0.146 4.146 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.232 0.768 33 H 0.176 0.824 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.235 0.765 39 H -0.173 1.173 40 H -0.164 1.164 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.850 -2.308 -4.601 6.428 hybrid contribution 0.077 0.171 1.547 1.559 sum 3.926 -2.137 -3.054 5.414 Atomic orbital electron populations 1.23315 0.75971 1.03969 1.02710 1.86506 1.23701 1.33362 1.83901 1.23781 0.91991 0.81415 0.72175 1.90692 1.67187 1.36371 1.44895 1.21180 0.87025 0.99524 1.02302 0.87025 1.21389 0.94401 0.93465 1.04576 1.21831 0.95531 1.01763 0.97332 1.21121 0.78452 0.96464 1.00083 0.88655 1.45932 1.07727 1.75325 1.08537 1.16898 0.84798 0.76197 0.84045 1.90859 1.68918 1.49134 1.31059 1.24646 0.97274 1.18299 0.98377 1.20678 0.91175 0.96326 0.99666 1.18717 0.95217 1.03492 0.93785 1.20612 0.96295 1.02724 0.96175 1.23211 0.99517 1.10751 0.97423 1.24138 0.92666 0.93992 1.04373 1.86512 1.38493 1.30564 1.79511 0.95444 0.90627 0.77446 0.79307 1.83032 0.94311 1.66607 1.07788 1.21945 0.95004 0.96298 1.03457 1.21507 0.95314 1.01659 0.96112 0.87873 0.91743 0.91776 0.90314 0.90060 0.90175 0.90788 0.76795 0.82417 0.90728 0.90862 0.90731 0.89448 0.76494 1.17297 1.16397 0.91093 0.90423 0.90804 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 101.05 1.07 1.06 16 2 O -0.36 -0.59 10.47 -39.26 -0.41 -1.00 16 3 C 0.46 0.99 7.26 36.01 0.26 1.26 16 4 O -0.50 -2.55 15.73 -18.75 -0.29 -2.84 16 5 C -0.08 0.05 2.63 -91.77 -0.24 -0.19 16 6 H 0.11 -0.25 8.14 -51.93 -0.42 -0.67 16 7 C -0.10 0.07 4.49 -26.73 -0.12 -0.05 16 8 C -0.13 0.24 5.39 -26.73 -0.14 0.09 16 9 C 0.14 -0.01 2.45 -67.93 -0.17 -0.18 16 10 H 0.10 0.17 7.58 -51.93 -0.39 -0.23 16 11 N -0.72 -0.39 5.07 -55.14 -0.28 -0.67 16 12 C 0.59 2.05 7.75 -12.90 -0.10 1.95 16 13 O -0.52 -3.48 16.50 5.19 0.09 -3.39 16 14 C -0.27 -0.71 6.45 -36.79 -0.24 -0.95 16 15 C -0.05 -0.11 9.78 -40.44 -0.40 -0.51 16 16 C -0.10 -0.15 5.78 -106.45 -0.62 -0.77 16 17 C -0.10 0.09 9.48 36.01 0.34 0.43 16 18 C -0.19 -0.29 4.86 -35.86 -0.17 -0.47 16 19 C -0.04 0.04 2.76 36.00 0.10 0.14 16 20 O -0.54 0.48 12.86 -35.23 -0.45 0.03 16 21 Si 0.67 -1.21 32.13 -169.99 -5.46 -6.67 16 22 S 0.21 0.28 20.83 -107.50 -2.24 -1.95 16 23 C -0.13 0.07 5.50 -26.70 -0.15 -0.08 16 24 C -0.11 0.08 5.14 -26.70 -0.14 -0.06 16 25 H 0.10 -0.27 8.14 -51.93 -0.42 -0.69 16 26 H 0.06 0.00 8.13 -51.93 -0.42 -0.42 16 27 H 0.06 -0.01 8.13 -51.93 -0.42 -0.43 16 28 H 0.08 0.04 8.10 -51.93 -0.42 -0.38 16 29 H 0.08 -0.03 8.10 -51.93 -0.42 -0.46 16 30 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 31 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16 32 H 0.40 -0.56 7.72 -40.82 -0.31 -0.87 16 33 H 0.16 0.30 8.06 -52.49 -0.42 -0.13 16 34 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 35 H 0.07 -0.11 6.98 -51.93 -0.36 -0.47 16 36 H 0.07 -0.10 8.10 -51.93 -0.42 -0.52 16 37 H 0.09 -0.24 6.24 -51.93 -0.32 -0.56 16 38 H 0.39 -2.31 8.74 45.56 0.40 -1.91 16 39 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 40 H -0.24 -0.17 7.11 56.52 0.40 0.23 16 41 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 42 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 43 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 44 H 0.08 -0.08 8.11 -51.93 -0.42 -0.50 16 LS Contribution 377.22 15.07 5.68 5.68 Total: 0.00 -9.48 377.22 -10.61 -20.09 By element: Atomic # 1 Polarization: -4.42 SS G_CDS: -6.53 Total: -10.94 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -0.71 Total: 1.68 kcal Atomic # 7 Polarization: -0.39 SS G_CDS: -0.28 Total: -0.67 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -1.07 Total: -7.21 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: -5.46 Total: -6.67 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -2.24 Total: -1.95 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -9.48 -10.61 -20.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14475160_6739946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.413 kcal (2) G-P(sol) polarization free energy of solvation -9.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds