Wall clock time and date at job start Tue Mar 9 2021 12:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 H 1.09002 * 109.47075 * 59.99068 * 4 2 1 6 6 C 1.52997 * 109.47415 * 179.97438 * 4 2 1 7 7 C 1.52999 * 109.47269 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47317 * 300.00344 * 7 6 4 9 9 H 1.09002 * 109.47153 * 299.99641 * 8 7 6 10 10 N 1.46500 * 109.47007 * 179.97438 * 8 7 6 11 11 C 1.34777 * 120.00075 * 84.99755 * 10 8 7 12 12 O 1.21279 * 119.99824 * 0.02562 * 11 10 8 13 13 C 1.50699 * 120.00179 * 179.97438 * 11 10 8 14 14 C 1.50697 * 109.47104 * 180.02562 * 13 11 10 15 15 C 1.38240 * 120.00051 * 269.72651 * 14 13 11 16 16 C 1.38232 * 119.99792 * 179.74714 * 15 14 13 17 17 C 1.38232 * 120.00343 * 0.52565 * 16 15 14 18 18 C 1.50697 * 120.00241 * 179.76950 * 17 16 15 19 19 O 1.42907 * 109.47098 * 119.97906 * 18 17 16 20 20 Si 1.86294 * 109.47211 * 359.97438 * 18 17 16 21 21 C 1.38238 * 119.99792 * 359.74655 * 17 16 15 22 22 C 1.38232 * 120.00236 * 89.99928 * 14 13 11 23 23 C 1.53000 * 109.47060 * 59.99960 * 8 7 6 24 24 C 1.53002 * 109.47233 * 299.99657 * 23 8 7 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.09000 * 109.47140 * 300.00024 * 6 4 2 33 33 H 1.09002 * 109.47045 * 59.99931 * 6 4 2 34 34 H 1.08996 * 109.46929 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.46716 * 60.00253 * 7 6 4 36 36 H 0.96997 * 120.00274 * 264.99726 * 10 8 7 37 37 H 1.08999 * 109.47169 * 300.00043 * 13 11 10 38 38 H 1.08999 * 109.47104 * 60.00393 * 13 11 10 39 39 H 1.07996 * 119.99645 * 359.97438 * 15 14 13 40 40 H 1.07998 * 119.99862 * 180.30016 * 16 15 14 41 41 H 1.09002 * 109.47046 * 239.97879 * 18 17 16 42 42 H 0.96698 * 114.00291 * 180.02562 * 19 18 17 43 43 H 1.48504 * 110.00347 * 59.99748 * 20 18 17 44 44 H 1.48495 * 110.00237 * 181.32105 * 20 18 17 45 45 H 1.08005 * 120.00099 * 179.97438 * 21 17 16 46 46 H 1.08005 * 119.99645 * 0.02562 * 22 14 13 47 47 H 1.09004 * 109.46724 * 180.02562 * 23 8 7 48 48 H 1.08992 * 109.47399 * 59.99823 * 23 8 7 49 49 H 1.09002 * 109.47075 * 300.00932 * 24 23 8 50 50 H 1.08996 * 109.47407 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6766 -0.2074 -2.1393 6 6 3.5700 -0.7206 -1.2497 7 6 4.0800 -1.4424 -2.4986 8 6 3.5705 -2.8850 -2.4978 9 1 3.9342 -3.3983 -1.6077 10 7 4.0583 -3.5758 -3.6941 11 6 5.2805 -4.1439 -3.6928 12 8 5.9762 -4.0836 -2.7013 13 6 5.7822 -4.8551 -4.9231 14 6 7.1638 -5.3971 -4.6618 15 6 8.2744 -4.6241 -4.9446 16 6 9.5416 -5.1193 -4.7000 17 6 9.6986 -6.3916 -4.1828 18 6 11.0802 -6.9334 -3.9210 19 8 11.2146 -7.2448 -2.5327 20 14 12.3490 -5.6549 -4.3964 21 6 8.5881 -7.1667 -3.9053 22 6 7.3208 -6.6694 -4.1446 23 6 2.0405 -2.8855 -2.4975 24 6 1.5304 -2.1639 -1.2485 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.9330 0.3071 -1.2498 33 1 3.9337 -1.2343 -0.3597 34 1 5.1700 -1.4416 -2.4990 35 1 3.7163 -0.9291 -3.3888 36 1 3.5018 -3.6244 -4.4870 37 1 5.1097 -5.6776 -5.1670 38 1 5.8180 -4.1553 -5.7581 39 1 8.1519 -3.6319 -5.3532 40 1 10.4091 -4.5136 -4.9163 41 1 11.2346 -7.8360 -4.5123 42 1 12.0814 -7.5989 -2.2911 43 1 12.1493 -4.4193 -3.5973 44 1 13.7165 -6.1889 -4.1730 45 1 8.7107 -8.1610 -3.5016 46 1 6.4531 -7.2751 -3.9282 47 1 1.6775 -3.9133 -2.4965 48 1 1.6768 -2.3722 -3.3876 49 1 1.8942 -2.6771 -0.3583 50 1 0.4405 -2.1638 -1.2485 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14589126_12335836.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:08 Heat of formation + Delta-G solvation = -71.780418 kcal Electronic energy + Delta-G solvation = -26624.891964 eV Core-core repulsion = 23002.974044 eV Total energy + Delta-G solvation = -3621.917920 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.198 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.27126 -40.41991 -39.50950 -37.68992 -36.60512 -34.25804 -33.83477 -31.94475 -31.83487 -30.35530 -28.86669 -28.07215 -25.69075 -23.84710 -23.70380 -23.48987 -21.95017 -21.31895 -21.00732 -20.60851 -18.47541 -18.08410 -17.66065 -17.12518 -16.84165 -16.34483 -16.15348 -15.78283 -15.37427 -15.25327 -15.09732 -14.88572 -14.63308 -14.51528 -14.40912 -14.25463 -14.18090 -13.83308 -13.42341 -13.30540 -13.16985 -13.10440 -13.02347 -12.75294 -12.63654 -12.28389 -12.14781 -12.11784 -12.07888 -11.84468 -11.65368 -11.62369 -11.36703 -11.18175 -10.96309 -10.70682 -10.44460 -9.95633 -9.74501 -9.48367 -4.92396 0.34730 0.58485 1.33633 1.64319 1.74940 2.02120 2.18884 2.83243 3.41809 3.62288 3.64519 3.67437 3.73722 3.89187 3.94623 3.98345 4.03830 4.12000 4.12408 4.26379 4.28064 4.30158 4.36654 4.42283 4.48768 4.50323 4.52414 4.58089 4.61126 4.64795 4.76453 4.77176 4.79406 4.94248 4.96834 5.00865 5.05644 5.08032 5.12725 5.15641 5.17733 5.18051 5.25769 5.33905 5.36154 5.48428 5.49736 5.56160 5.60070 5.66761 5.68808 6.10247 6.49759 6.55261 7.33105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.083 4.083 5 H 0.071 0.929 6 C -0.114 4.114 7 C -0.128 4.128 8 C 0.145 3.855 9 H 0.087 0.913 10 N -0.731 5.731 11 C 0.513 3.487 12 O -0.526 6.526 13 C -0.103 4.103 14 C -0.063 4.063 15 C -0.100 4.100 16 C -0.112 4.112 17 C -0.073 4.073 18 C -0.076 4.076 19 O -0.535 6.535 20 Si 0.681 3.319 21 C -0.090 4.090 22 C -0.104 4.104 23 C -0.126 4.126 24 C -0.113 4.113 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.399 0.601 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.076 0.924 42 H 0.379 0.621 43 H -0.255 1.255 44 H -0.262 1.262 45 H 0.124 0.876 46 H 0.122 0.878 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.065 0.935 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.043 0.102 -5.330 6.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.101 4.101 5 H 0.089 0.911 6 C -0.152 4.152 7 C -0.166 4.166 8 C 0.041 3.959 9 H 0.105 0.895 10 N -0.383 5.383 11 C 0.299 3.701 12 O -0.401 6.401 13 C -0.143 4.143 14 C -0.064 4.064 15 C -0.118 4.118 16 C -0.130 4.130 17 C -0.073 4.073 18 C -0.185 4.185 19 O -0.342 6.342 20 Si 0.582 3.418 21 C -0.108 4.108 22 C -0.122 4.122 23 C -0.164 4.164 24 C -0.151 4.151 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.233 0.767 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.094 0.906 42 H 0.226 0.774 43 H -0.180 1.180 44 H -0.187 1.187 45 H 0.142 0.858 46 H 0.140 0.860 47 H 0.087 0.913 48 H 0.086 0.914 49 H 0.084 0.916 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.479 0.862 -4.320 5.055 hybrid contribution 0.027 -0.738 0.602 0.952 sum -2.452 0.124 -3.719 4.456 Atomic orbital electron populations 1.21907 0.95237 1.01834 1.01781 1.21146 0.95732 0.96227 0.98037 1.21906 1.01247 0.95898 1.01751 1.21248 0.95210 0.95470 0.98217 0.91087 1.21615 0.95019 1.00706 0.97869 1.21905 1.01227 0.94930 0.98584 1.21002 0.93627 0.92665 0.88583 0.89500 1.46126 1.17926 1.57225 1.17002 1.20586 0.81235 0.78574 0.89693 1.90767 1.55755 1.58731 1.34848 1.20695 0.95148 1.01470 0.97005 1.19257 0.93477 0.94321 0.99301 1.20871 0.91639 0.99263 0.99989 1.20863 0.97342 0.94594 1.00180 1.19228 0.93646 0.94446 1.00011 1.24809 1.01499 1.06761 0.85480 1.86613 1.38238 1.85944 1.23414 0.95165 0.76346 0.78829 0.91456 1.20925 0.91596 1.00025 0.98217 1.20989 0.97335 0.95325 0.98572 1.21806 0.93907 1.01235 0.99410 1.21606 1.00843 0.95196 0.97474 0.92394 0.92768 0.92724 0.91223 0.92355 0.92737 0.92763 0.91274 0.91741 0.91488 0.91865 0.76663 0.87767 0.87703 0.85731 0.85607 0.90620 0.77360 1.17971 1.18734 0.85798 0.86012 0.91310 0.91359 0.91630 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.13 8.84 37.16 0.33 0.46 16 2 C -0.09 0.06 2.51 -90.62 -0.23 -0.17 16 3 C -0.15 0.08 8.84 37.16 0.33 0.40 16 4 C -0.08 0.08 1.78 -90.62 -0.16 -0.08 16 5 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 6 C -0.11 0.01 4.85 -26.73 -0.13 -0.12 16 7 C -0.13 -0.05 5.49 -26.73 -0.15 -0.19 16 8 C 0.15 0.01 2.45 -67.93 -0.17 -0.15 16 9 H 0.09 0.23 7.58 -51.93 -0.39 -0.17 16 10 N -0.73 0.61 5.08 -53.81 -0.27 0.33 16 11 C 0.51 0.86 7.79 -10.99 -0.09 0.78 16 12 O -0.53 -3.44 15.70 5.56 0.09 -3.36 16 13 C -0.10 0.11 5.83 -29.04 -0.17 -0.06 16 14 C -0.06 -0.11 4.37 -104.62 -0.46 -0.57 16 15 C -0.10 -0.18 9.70 -39.58 -0.38 -0.57 16 16 C -0.11 -0.24 8.67 -39.59 -0.34 -0.59 16 17 C -0.07 -0.21 5.42 -104.63 -0.57 -0.78 16 18 C -0.08 -0.10 2.81 36.00 0.10 0.00 16 19 O -0.54 -1.48 12.74 -35.23 -0.45 -1.93 16 20 Si 0.68 0.20 29.79 -169.99 -5.06 -4.86 16 21 C -0.09 -0.27 9.61 -39.58 -0.38 -0.65 16 22 C -0.10 -0.24 9.70 -39.58 -0.38 -0.63 16 23 C -0.13 0.21 5.39 -26.73 -0.14 0.07 16 24 C -0.11 0.15 4.85 -26.73 -0.13 0.02 16 25 H 0.06 -0.07 6.43 -51.93 -0.33 -0.40 16 26 H 0.05 -0.03 8.14 -51.93 -0.42 -0.46 16 27 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 28 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 29 H 0.06 -0.02 6.43 -51.93 -0.33 -0.36 16 30 H 0.05 -0.03 8.14 -51.93 -0.42 -0.45 16 31 H 0.05 -0.02 8.14 -51.93 -0.42 -0.44 16 32 H 0.07 -0.01 6.43 -51.93 -0.33 -0.34 16 33 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 34 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 36 H 0.40 -1.49 8.60 -40.82 -0.35 -1.84 16 37 H 0.10 -0.33 8.08 -51.93 -0.42 -0.75 16 38 H 0.10 -0.35 8.08 -51.93 -0.42 -0.77 16 39 H 0.12 -0.02 8.06 -52.49 -0.42 -0.44 16 40 H 0.13 0.04 4.88 -52.49 -0.26 -0.22 16 41 H 0.08 -0.05 7.96 -51.93 -0.41 -0.46 16 42 H 0.38 -0.55 8.74 45.56 0.40 -0.15 16 43 H -0.26 -0.97 7.11 56.52 0.40 -0.57 16 44 H -0.26 -0.54 7.11 56.52 0.40 -0.14 16 45 H 0.12 0.27 8.06 -52.48 -0.42 -0.16 16 46 H 0.12 0.08 8.06 -52.48 -0.42 -0.34 16 47 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 48 H 0.07 -0.16 8.14 -51.93 -0.42 -0.59 16 49 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 50 H 0.07 -0.12 6.43 -51.93 -0.33 -0.45 16 LS Contribution 387.96 15.07 5.85 5.85 Total: 0.00 -8.04 387.96 -11.70 -19.74 By element: Atomic # 1 Polarization: -4.22 SS G_CDS: -8.73 Total: -12.95 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -3.12 Total: -2.82 kcal Atomic # 7 Polarization: 0.61 SS G_CDS: -0.27 Total: 0.33 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.36 Total: -5.29 kcal Atomic # 14 Polarization: 0.20 SS G_CDS: -5.06 Total: -4.86 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -8.04 -11.70 -19.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_12335836.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.037 kcal (2) G-P(sol) polarization free energy of solvation -8.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds