Wall clock time and date at job start Tue Mar 9 2021 12:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 H 1.09002 * 109.47075 * 59.99068 * 4 2 1 6 6 C 1.52997 * 109.47415 * 179.97438 * 4 2 1 7 7 C 1.52999 * 109.47269 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47317 * 300.00344 * 7 6 4 9 9 H 1.09002 * 109.47153 * 299.99641 * 8 7 6 10 10 N 1.46500 * 109.47007 * 179.97438 * 8 7 6 11 11 C 1.34777 * 120.00075 * 84.99755 * 10 8 7 12 12 O 1.21279 * 119.99824 * 0.02562 * 11 10 8 13 13 C 1.50699 * 120.00179 * 179.97438 * 11 10 8 14 14 C 1.50697 * 109.47104 * 180.02562 * 13 11 10 15 15 C 1.38240 * 120.00051 * 269.72651 * 14 13 11 16 16 C 1.38232 * 119.99792 * 179.74714 * 15 14 13 17 17 C 1.38232 * 120.00343 * 0.52565 * 16 15 14 18 18 C 1.50697 * 120.00241 * 179.76950 * 17 16 15 19 19 O 1.42907 * 109.47098 * 119.97906 * 18 17 16 20 20 Si 1.86294 * 109.47211 * 359.97438 * 18 17 16 21 21 C 1.38238 * 119.99792 * 359.74655 * 17 16 15 22 22 C 1.38232 * 120.00236 * 89.99928 * 14 13 11 23 23 C 1.53000 * 109.47060 * 59.99960 * 8 7 6 24 24 C 1.53002 * 109.47233 * 299.99657 * 23 8 7 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.09000 * 109.47140 * 300.00024 * 6 4 2 33 33 H 1.09002 * 109.47045 * 59.99931 * 6 4 2 34 34 H 1.08996 * 109.46929 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.46716 * 60.00253 * 7 6 4 36 36 H 0.96997 * 120.00274 * 264.99726 * 10 8 7 37 37 H 1.08999 * 109.47169 * 300.00043 * 13 11 10 38 38 H 1.08999 * 109.47104 * 60.00393 * 13 11 10 39 39 H 1.07996 * 119.99645 * 359.97438 * 15 14 13 40 40 H 1.07998 * 119.99862 * 180.30016 * 16 15 14 41 41 H 1.09002 * 109.47046 * 239.97879 * 18 17 16 42 42 H 0.96698 * 114.00291 * 180.02562 * 19 18 17 43 43 H 1.48504 * 110.00347 * 59.99748 * 20 18 17 44 44 H 1.48495 * 110.00237 * 181.32105 * 20 18 17 45 45 H 1.08005 * 120.00099 * 179.97438 * 21 17 16 46 46 H 1.08005 * 119.99645 * 0.02562 * 22 14 13 47 47 H 1.09004 * 109.46724 * 180.02562 * 23 8 7 48 48 H 1.08992 * 109.47399 * 59.99823 * 23 8 7 49 49 H 1.09002 * 109.47075 * 300.00932 * 24 23 8 50 50 H 1.08996 * 109.47407 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6766 -0.2074 -2.1393 6 6 3.5700 -0.7206 -1.2497 7 6 4.0800 -1.4424 -2.4986 8 6 3.5705 -2.8850 -2.4978 9 1 3.9342 -3.3983 -1.6077 10 7 4.0583 -3.5758 -3.6941 11 6 5.2805 -4.1439 -3.6928 12 8 5.9762 -4.0836 -2.7013 13 6 5.7822 -4.8551 -4.9231 14 6 7.1638 -5.3971 -4.6618 15 6 8.2744 -4.6241 -4.9446 16 6 9.5416 -5.1193 -4.7000 17 6 9.6986 -6.3916 -4.1828 18 6 11.0802 -6.9334 -3.9210 19 8 11.2146 -7.2448 -2.5327 20 14 12.3490 -5.6549 -4.3964 21 6 8.5881 -7.1667 -3.9053 22 6 7.3208 -6.6694 -4.1446 23 6 2.0405 -2.8855 -2.4975 24 6 1.5304 -2.1639 -1.2485 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.9330 0.3071 -1.2498 33 1 3.9337 -1.2343 -0.3597 34 1 5.1700 -1.4416 -2.4990 35 1 3.7163 -0.9291 -3.3888 36 1 3.5018 -3.6244 -4.4870 37 1 5.1097 -5.6776 -5.1670 38 1 5.8180 -4.1553 -5.7581 39 1 8.1519 -3.6319 -5.3532 40 1 10.4091 -4.5136 -4.9163 41 1 11.2346 -7.8360 -4.5123 42 1 12.0814 -7.5989 -2.2911 43 1 12.1493 -4.4193 -3.5973 44 1 13.7165 -6.1889 -4.1730 45 1 8.7107 -8.1610 -3.5016 46 1 6.4531 -7.2751 -3.9282 47 1 1.6775 -3.9133 -2.4965 48 1 1.6768 -2.3722 -3.3876 49 1 1.8942 -2.6771 -0.3583 50 1 0.4405 -2.1638 -1.2485 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589126_12335836.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:07 Heat of formation + Delta-G solvation = -67.979055 kcal Electronic energy + Delta-G solvation = -26624.727125 eV Core-core repulsion = 23002.974044 eV Total energy + Delta-G solvation = -3621.753081 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.198 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.35151 -40.47136 -39.58646 -37.81629 -36.65490 -34.35384 -33.86526 -31.94622 -31.92152 -30.39084 -28.87092 -28.02381 -25.76168 -23.84848 -23.81520 -23.47425 -22.04193 -21.37995 -21.01556 -20.58837 -18.60879 -18.12317 -17.74325 -17.18109 -16.92184 -16.36700 -16.24633 -15.86364 -15.38431 -15.29023 -15.13088 -14.94259 -14.70403 -14.56385 -14.40889 -14.34647 -14.18520 -13.99377 -13.42752 -13.38379 -13.20274 -13.10199 -12.96567 -12.74081 -12.64120 -12.29130 -12.26971 -12.10631 -12.04932 -11.92706 -11.76619 -11.63303 -11.34187 -11.21460 -10.96454 -10.82322 -10.54346 -10.02341 -9.87969 -9.59039 -4.97880 0.23051 0.44921 1.26581 1.55804 1.66040 1.92094 2.17744 2.74827 3.38436 3.63357 3.66135 3.68437 3.75812 3.84971 3.89760 4.02277 4.04446 4.06095 4.14456 4.29498 4.31167 4.32796 4.37564 4.44812 4.48138 4.52371 4.54024 4.62322 4.65512 4.66566 4.72037 4.79226 4.81510 4.99581 5.00445 5.01783 5.05358 5.07988 5.08476 5.14333 5.17879 5.19678 5.28587 5.35951 5.37125 5.38412 5.53516 5.53773 5.55768 5.58379 5.61992 6.01080 6.55519 6.59640 7.31069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.076 4.076 5 H 0.078 0.922 6 C -0.112 4.112 7 C -0.121 4.121 8 C 0.147 3.853 9 H 0.055 0.945 10 N -0.716 5.716 11 C 0.510 3.490 12 O -0.583 6.583 13 C -0.097 4.097 14 C -0.072 4.072 15 C -0.110 4.110 16 C -0.126 4.126 17 C -0.092 4.092 18 C -0.088 4.088 19 O -0.561 6.561 20 Si 0.768 3.232 21 C -0.109 4.109 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.113 4.113 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.417 0.583 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.097 0.903 42 H 0.394 0.606 43 H -0.306 1.306 44 H -0.283 1.283 45 H 0.124 0.876 46 H 0.133 0.867 47 H 0.074 0.926 48 H 0.086 0.914 49 H 0.053 0.947 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.425 0.208 -7.151 8.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.094 4.094 5 H 0.096 0.904 6 C -0.150 4.150 7 C -0.160 4.160 8 C 0.042 3.958 9 H 0.073 0.927 10 N -0.368 5.368 11 C 0.298 3.702 12 O -0.463 6.463 13 C -0.136 4.136 14 C -0.072 4.072 15 C -0.128 4.128 16 C -0.143 4.143 17 C -0.092 4.092 18 C -0.196 4.196 19 O -0.371 6.371 20 Si 0.673 3.327 21 C -0.127 4.127 22 C -0.135 4.135 23 C -0.155 4.155 24 C -0.151 4.151 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.255 0.745 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.115 0.885 42 H 0.244 0.756 43 H -0.235 1.235 44 H -0.210 1.210 45 H 0.142 0.858 46 H 0.151 0.849 47 H 0.092 0.908 48 H 0.105 0.895 49 H 0.072 0.928 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.898 0.943 -6.185 7.372 hybrid contribution 0.454 -0.740 1.237 1.511 sum -3.445 0.204 -4.948 6.033 Atomic orbital electron populations 1.21890 0.94727 1.02128 1.01820 1.21135 0.96119 0.96056 0.97839 1.21904 1.01029 0.96022 1.01834 1.21182 0.94135 0.95798 0.98296 0.90364 1.21585 0.95968 1.00383 0.97075 1.21828 0.99513 0.95382 0.99290 1.20910 0.94952 0.92052 0.87867 0.92656 1.46005 1.17412 1.56013 1.17363 1.21101 0.81248 0.78104 0.89740 1.90751 1.57418 1.61025 1.37089 1.20765 0.93879 1.02659 0.96268 1.19593 0.94948 0.94071 0.98610 1.21214 0.91659 1.00097 0.99861 1.21118 0.98221 0.94644 1.00332 1.19503 0.94402 0.94915 1.00403 1.25072 1.01200 1.08245 0.85127 1.86566 1.39827 1.86289 1.24399 0.94211 0.73905 0.74866 0.89671 1.21102 0.92258 1.00378 0.98955 1.21249 0.97529 0.96060 0.98635 1.21751 0.92043 1.01793 0.99883 1.21608 1.01383 0.94786 0.97315 0.91966 0.93067 0.92341 0.92132 0.92722 0.92373 0.92939 0.91286 0.93312 0.94167 0.90445 0.74519 0.85083 0.84748 0.83952 0.84416 0.88548 0.75569 1.23464 1.20961 0.85787 0.84862 0.90759 0.89550 0.92779 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.34 8.84 71.98 0.64 0.97 16 2 C -0.09 0.10 2.51 -10.79 -0.03 0.08 16 3 C -0.15 0.12 8.84 71.98 0.64 0.75 16 4 C -0.08 0.16 1.78 -10.79 -0.02 0.14 16 5 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 6 C -0.11 -0.10 4.85 30.59 0.15 0.05 16 7 C -0.12 -0.17 5.49 30.59 0.17 0.00 16 8 C 0.15 0.08 2.45 44.99 0.11 0.19 16 9 H 0.06 0.41 7.58 -2.39 -0.02 0.39 16 10 N -0.72 1.64 5.08 -442.54 -2.25 -0.61 16 11 C 0.51 1.76 7.79 87.66 0.68 2.45 16 12 O -0.58 -8.71 15.70 -3.03 -0.05 -8.76 16 13 C -0.10 0.33 5.83 29.10 0.17 0.50 16 14 C -0.07 -0.25 4.37 -19.87 -0.09 -0.34 16 15 C -0.11 -0.44 9.70 22.27 0.22 -0.22 16 16 C -0.13 -0.65 8.67 22.27 0.19 -0.46 16 17 C -0.09 -0.63 5.42 -19.87 -0.11 -0.74 16 18 C -0.09 -0.29 2.81 71.24 0.20 -0.09 16 19 O -0.56 -3.71 12.74 -148.98 -1.90 -5.61 16 20 Si 0.77 0.88 29.79 68.60 2.04 2.92 16 21 C -0.11 -0.80 9.61 22.27 0.21 -0.58 16 22 C -0.12 -0.63 9.70 22.27 0.22 -0.41 16 23 C -0.12 0.51 5.39 30.60 0.16 0.68 16 24 C -0.11 0.33 4.85 30.60 0.15 0.48 16 25 H 0.06 -0.19 6.43 -2.39 -0.02 -0.20 16 26 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 27 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 28 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.05 0.00 6.43 -2.39 -0.02 -0.02 16 30 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.07 0.05 6.43 -2.39 -0.02 0.04 16 33 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.04 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H 0.42 -3.98 8.60 -92.71 -0.80 -4.78 16 37 H 0.13 -1.14 8.08 -2.39 -0.02 -1.16 16 38 H 0.13 -1.25 8.08 -2.39 -0.02 -1.27 16 39 H 0.14 -0.10 8.06 -2.91 -0.02 -0.12 16 40 H 0.14 0.18 4.88 -2.91 -0.01 0.17 16 41 H 0.10 -0.13 7.96 -2.39 -0.02 -0.15 16 42 H 0.39 -0.84 8.74 -74.06 -0.65 -1.48 16 43 H -0.31 -2.95 7.11 99.48 0.71 -2.24 16 44 H -0.28 -1.23 7.11 99.48 0.71 -0.52 16 45 H 0.12 0.74 8.06 -2.91 -0.02 0.71 16 46 H 0.13 0.23 8.06 -2.91 -0.02 0.21 16 47 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 48 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 49 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 50 H 0.08 -0.38 6.43 -2.39 -0.02 -0.39 16 Total: 0.00 -21.87 387.96 1.03 -20.84 By element: Atomic # 1 Polarization: -11.75 SS G_CDS: -0.49 Total: -12.24 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 3.66 Total: 3.46 kcal Atomic # 7 Polarization: 1.64 SS G_CDS: -2.25 Total: -0.61 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -1.95 Total: -14.37 kcal Atomic # 14 Polarization: 0.88 SS G_CDS: 2.04 Total: 2.92 kcal Total: -21.87 1.03 -20.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589126_12335836.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.141 kcal (2) G-P(sol) polarization free energy of solvation -21.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds