Wall clock time and date at job start Tue Mar 9 2021 13:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45205 * 109.47143 * 2 1 4 4 C 1.34222 * 116.99736 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00394 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99750 * 179.97438 * 4 3 2 7 7 H 1.08991 * 109.47046 * 59.99774 * 6 4 3 8 8 C 1.52996 * 109.46997 * 180.02562 * 6 4 3 9 9 C 1.53002 * 109.47060 * 180.02562 * 8 6 4 10 10 C 1.53005 * 109.47004 * 299.99662 * 9 8 6 11 11 H 1.08999 * 109.46735 * 300.00023 * 10 9 8 12 12 N 1.46497 * 109.47285 * 180.02562 * 10 9 8 13 13 C 1.34776 * 119.99926 * 155.00188 * 12 10 9 14 14 O 1.21701 * 120.00204 * 359.97438 * 13 12 10 15 15 C 1.46591 * 119.99652 * 179.97438 * 13 12 10 16 16 C 1.36644 * 125.45451 * 180.02562 * 15 13 12 17 17 C 1.37474 * 113.29545 * 180.02562 * 16 15 13 18 18 C 1.50697 * 122.44762 * 180.02562 * 17 16 15 19 19 C 1.33817 * 115.10344 * 359.97438 * 17 16 15 20 20 C 1.50694 * 124.52866 * 180.02562 * 19 17 16 21 21 O 1.42900 * 109.46849 * 45.09705 * 20 19 17 22 22 Si 1.86296 * 109.47381 * 165.09895 * 20 19 17 23 23 S 1.70620 * 110.95010 * 0.26347 * 19 17 16 24 24 C 1.53004 * 109.46922 * 59.99797 * 10 9 8 25 25 C 1.52998 * 109.47118 * 300.00027 * 24 10 9 26 26 H 1.08997 * 109.46962 * 300.00551 * 1 2 3 27 27 H 1.08999 * 109.46617 * 60.00267 * 1 2 3 28 28 H 1.09004 * 109.46667 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47483 * 239.99404 * 2 1 3 30 30 H 1.09004 * 109.47065 * 119.99644 * 2 1 3 31 31 H 1.08991 * 109.47648 * 59.99847 * 8 6 4 32 32 H 1.09004 * 109.47111 * 299.99623 * 8 6 4 33 33 H 1.09000 * 109.47289 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.47394 * 59.99282 * 9 8 6 35 35 H 0.97004 * 119.99822 * 334.99560 * 12 10 9 36 36 H 1.08005 * 123.35489 * 0.06783 * 16 15 13 37 37 H 1.09007 * 109.47085 * 264.22618 * 18 17 16 38 38 H 1.08993 * 109.47492 * 24.23198 * 18 17 16 39 39 H 1.09005 * 109.47111 * 144.23360 * 18 17 16 40 40 H 1.09006 * 109.46791 * 285.09907 * 20 19 17 41 41 H 0.96704 * 114.00093 * 180.02562 * 21 20 19 42 42 H 1.48499 * 109.99825 * 299.99776 * 22 20 19 43 43 H 1.48497 * 110.00188 * 61.32112 * 22 20 19 44 44 H 1.08998 * 109.46707 * 60.00509 * 24 10 9 45 45 H 1.08999 * 109.46646 * 180.02562 * 24 10 9 46 46 H 1.08991 * 109.47161 * 300.00209 * 25 24 10 47 47 H 1.09000 * 109.46960 * 179.97438 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5844 3.4701 0.8894 8 6 5.4486 2.8573 0.0001 9 6 6.0334 4.2712 0.0002 10 6 5.5621 5.0181 -1.2491 11 1 5.8981 4.4859 -2.1390 12 7 6.1225 6.3717 -1.2494 13 6 6.2861 7.0330 -2.4123 14 8 5.9688 6.5056 -3.4622 15 6 6.8464 8.3876 -2.4125 16 6 7.0594 9.1571 -3.5214 17 6 7.5969 10.3891 -3.2331 18 6 7.9142 11.4030 -4.3020 19 6 7.8168 10.6227 -1.9340 20 6 8.3972 11.8992 -1.3819 21 8 7.7644 13.0187 -2.0051 22 14 8.1094 11.9677 0.4574 23 16 7.3584 9.2798 -0.9866 24 6 4.0341 5.0981 -1.2493 25 6 3.4494 3.6843 -1.2494 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 5.7847 2.3248 -0.8895 32 1 5.7845 2.3256 0.8904 33 1 7.1219 4.2141 0.0008 34 1 5.6974 4.8034 0.8901 35 1 6.3757 6.7919 -0.4126 36 1 6.8278 8.8303 -4.5244 37 1 8.9659 11.3234 -4.5775 38 1 7.2938 11.2138 -5.1779 39 1 7.7127 12.4051 -3.9235 40 1 9.4680 11.9284 -1.5835 41 1 8.0897 13.8759 -1.6975 42 1 6.6532 11.9286 0.7454 43 1 8.7893 10.8262 1.1207 44 1 3.6981 5.6304 -0.3594 45 1 3.6983 5.6299 -2.1396 46 1 3.7855 3.1522 -2.1392 47 1 2.3609 3.7413 -1.2491 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14589458_6739946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:05 Heat of formation + Delta-G solvation = -133.284254 kcal Electronic energy + Delta-G solvation = -28802.230655 eV Core-core repulsion = 24656.745070 eV Total energy + Delta-G solvation = -4145.485586 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.138 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.93090 -41.20215 -39.90918 -39.04769 -37.73115 -37.36488 -35.52514 -32.90343 -32.49384 -31.91617 -30.91163 -30.19389 -26.87931 -25.34507 -24.34431 -23.91846 -23.53776 -22.10516 -21.81571 -21.00773 -20.06042 -19.23700 -18.77656 -18.46573 -17.85268 -17.69985 -17.48479 -17.10526 -16.39374 -16.17678 -15.91751 -15.52467 -15.32372 -15.05010 -14.96844 -14.73862 -14.57655 -14.52208 -14.46846 -14.18536 -13.87257 -13.55499 -13.34775 -13.28103 -13.01393 -12.98787 -12.96701 -12.83054 -12.56247 -12.55164 -12.46214 -12.27308 -12.21607 -12.04063 -11.69470 -11.58387 -11.53772 -11.48229 -11.23827 -10.52148 -10.31974 -9.79625 -9.51865 -5.20268 -0.77853 0.20330 0.53238 1.05547 1.05785 1.25808 1.57845 1.58199 1.87322 1.89732 1.96153 3.29687 3.39768 3.44315 3.55390 3.65277 3.73571 3.83594 3.93932 3.98376 4.01302 4.05004 4.10355 4.21066 4.24542 4.27136 4.28656 4.35218 4.41169 4.51256 4.55283 4.68415 4.71546 4.78863 4.83711 4.85793 4.86712 4.95852 4.96659 5.01412 5.02932 5.10970 5.14876 5.18024 5.31342 5.32773 5.41426 5.46182 6.22487 6.61909 6.87762 6.90817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.464 3.536 5 O -0.540 6.540 6 C -0.075 4.075 7 H 0.137 0.863 8 C -0.097 4.097 9 C -0.116 4.116 10 C 0.141 3.859 11 H 0.071 0.929 12 N -0.710 5.710 13 C 0.591 3.409 14 O -0.565 6.565 15 C -0.279 4.279 16 C -0.058 4.058 17 C -0.097 4.097 18 C -0.102 4.102 19 C -0.203 4.203 20 C -0.042 4.042 21 O -0.552 6.552 22 Si 0.753 3.247 23 S 0.198 5.802 24 C -0.121 4.121 25 C -0.101 4.101 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.409 0.591 36 H 0.151 0.849 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.407 0.593 42 H -0.282 1.282 43 H -0.257 1.257 44 H 0.090 0.910 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.671 6.862 6.123 9.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.309 3.691 5 O -0.430 6.430 6 C -0.094 4.094 7 H 0.155 0.845 8 C -0.135 4.135 9 C -0.153 4.153 10 C 0.037 3.963 11 H 0.089 0.911 12 N -0.361 5.361 13 C 0.378 3.622 14 O -0.446 6.446 15 C -0.398 4.398 16 C -0.092 4.092 17 C -0.110 4.110 18 C -0.160 4.160 19 C -0.322 4.322 20 C -0.153 4.153 21 O -0.363 6.363 22 Si 0.655 3.345 23 S 0.466 5.534 24 C -0.160 4.160 25 C -0.139 4.139 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.246 0.754 36 H 0.168 0.832 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.126 0.874 41 H 0.259 0.741 42 H -0.208 1.208 43 H -0.183 1.183 44 H 0.108 0.892 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.004 4.955 7.375 8.941 hybrid contribution 0.091 -0.314 -2.009 2.036 sum 1.096 4.641 5.366 7.178 Atomic orbital electron populations 1.21825 0.90668 1.04263 1.03744 1.23249 0.96940 0.79411 1.02416 1.86515 1.24281 1.33411 1.83454 1.24276 0.80565 0.93248 0.71020 1.90671 1.61118 1.44434 1.46733 1.21255 0.96571 0.88387 1.03169 0.84493 1.21346 0.91534 0.96870 1.03788 1.21770 1.01913 0.94627 0.97032 1.21154 0.93607 0.81281 1.00219 0.91051 1.45847 1.64582 1.17410 1.08263 1.17123 0.77147 0.83773 0.84108 1.90829 1.52484 1.68697 1.32615 1.24667 1.15856 1.00224 0.99065 1.20884 0.96250 0.92565 0.99461 1.18895 1.01226 0.95817 0.95024 1.20747 1.01970 0.98230 0.95058 1.23613 1.09390 1.01763 0.97456 1.24186 0.99164 0.83392 1.08603 1.86406 1.65706 1.16729 1.67505 0.93749 0.79735 0.87707 0.73331 1.82716 1.57309 1.05501 1.07883 1.21858 0.94143 0.96661 1.03337 1.21417 1.02053 0.94831 0.95630 0.91106 0.91361 0.88571 0.91672 0.91284 0.92098 0.89914 0.89711 0.88392 0.75433 0.83173 0.90597 0.91694 0.88328 0.87402 0.74090 1.20803 1.18267 0.89176 0.92514 0.92246 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.39 10.29 71.98 0.74 1.13 16 2 C 0.05 0.11 6.19 71.98 0.45 0.56 16 3 O -0.36 -1.59 10.12 -51.34 -0.52 -2.11 16 4 C 0.46 2.49 7.26 71.24 0.52 3.01 16 5 O -0.54 -6.35 15.73 21.96 0.35 -6.01 16 6 C -0.08 0.08 2.63 -11.54 -0.03 0.05 16 7 H 0.14 -0.82 8.14 -2.39 -0.02 -0.84 16 8 C -0.10 0.10 4.49 30.59 0.14 0.24 16 9 C -0.12 0.49 5.39 30.60 0.16 0.66 16 10 C 0.14 0.11 2.45 44.99 0.11 0.22 16 11 H 0.07 0.43 7.57 -2.39 -0.02 0.41 16 12 N -0.71 -1.31 5.07 -446.58 -2.27 -3.57 16 13 C 0.59 5.27 7.75 86.42 0.67 5.94 16 14 O -0.57 -9.35 16.50 -4.35 -0.07 -9.43 16 15 C -0.28 -1.95 6.45 24.08 0.16 -1.79 16 16 C -0.06 -0.43 9.78 21.72 0.21 -0.22 16 17 C -0.10 -0.47 5.75 -21.05 -0.12 -0.59 16 18 C -0.10 -0.14 9.74 71.23 0.69 0.56 16 19 C -0.20 -0.56 5.65 24.68 0.14 -0.42 16 20 C -0.04 0.17 2.69 71.23 0.19 0.36 16 21 O -0.55 2.58 10.16 -148.98 -1.51 1.07 16 22 Si 0.75 -4.26 30.99 68.60 2.13 -2.13 16 23 S 0.20 0.44 19.36 -56.49 -1.09 -0.66 16 24 C -0.12 0.02 5.50 30.59 0.17 0.19 16 25 C -0.10 0.05 5.14 30.59 0.16 0.21 16 26 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 28 H 0.10 -0.53 8.14 -2.38 -0.02 -0.55 16 29 H 0.06 0.20 8.13 -2.39 -0.02 0.18 16 30 H 0.07 0.15 8.13 -2.38 -0.02 0.14 16 31 H 0.06 0.17 8.10 -2.39 -0.02 0.15 16 32 H 0.08 -0.07 8.10 -2.38 -0.02 -0.09 16 33 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 34 H 0.10 -0.83 8.14 -2.39 -0.02 -0.85 16 35 H 0.41 -1.28 7.72 -92.71 -0.72 -2.00 16 36 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 37 H 0.08 -0.04 8.14 -2.38 -0.02 -0.06 16 38 H 0.06 0.07 8.10 -2.39 -0.02 0.05 16 39 H 0.10 0.09 5.48 -2.38 -0.01 0.07 16 40 H 0.11 -0.88 7.96 -2.38 -0.02 -0.90 16 41 H 0.41 -6.18 8.74 -74.05 -0.65 -6.83 16 42 H -0.28 -0.56 7.11 99.48 0.71 0.15 16 43 H -0.26 0.55 7.11 99.48 0.71 1.26 16 44 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 45 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 46 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 47 H 0.09 -0.12 8.11 -2.39 -0.02 -0.14 16 Total: 0.00 -23.30 394.92 1.03 -22.27 By element: Atomic # 1 Polarization: -9.21 SS G_CDS: -0.33 Total: -9.54 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 4.35 Total: 10.10 kcal Atomic # 7 Polarization: -1.31 SS G_CDS: -2.27 Total: -3.57 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -1.76 Total: -16.47 kcal Atomic # 14 Polarization: -4.26 SS G_CDS: 2.13 Total: -2.13 kcal Atomic # 16 Polarization: 0.44 SS G_CDS: -1.09 Total: -0.66 kcal Total: -23.30 1.03 -22.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14589458_6739946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.013 kcal (2) G-P(sol) polarization free energy of solvation -23.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds