Wall clock time and date at job start Tue Mar 9 2021 13:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.38316 * 119.92327 * 120.00402 * 4 2 1 6 6 C 1.38466 * 120.28605 * 180.02562 * 5 4 2 7 7 Br 1.89098 * 119.93776 * 179.97438 * 6 5 4 8 8 C 1.38025 * 120.12023 * 359.95297 * 6 5 4 9 9 C 1.39579 * 119.84622 * 0.02562 * 8 6 5 10 10 C 1.47856 * 120.14219 * 179.97438 * 9 8 6 11 11 O 1.21551 * 119.99854 * 179.97438 * 10 9 8 12 12 N 1.34773 * 119.99536 * 359.97438 * 10 9 8 13 13 C 1.46507 * 119.99816 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.84367 * 25.33928 * 13 12 10 15 15 C 1.53775 * 113.61313 * 156.52947 * 13 12 10 16 16 C 1.53777 * 87.08123 * 139.98585 * 15 13 12 17 17 H 1.08996 * 113.61788 * 89.19801 * 16 15 13 18 18 C 1.53005 * 113.61703 * 220.01942 * 16 15 13 19 19 N 1.46493 * 109.47359 * 184.99829 * 18 16 15 20 20 C 1.34426 * 126.82588 * 125.00065 * 19 18 16 21 21 N 1.30829 * 108.08133 * 179.97438 * 20 19 18 22 22 C 1.33242 * 109.82943 * 359.97438 * 21 20 19 23 23 N 1.30720 * 108.94406 * 359.75291 * 22 21 20 24 24 C 1.53774 * 113.61905 * 254.13955 * 13 12 10 25 25 C 1.37986 * 119.92005 * 299.72705 * 4 2 1 26 26 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 27 27 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 28 28 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 29 29 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 30 30 H 1.08004 * 119.85804 * 359.97438 * 5 4 2 31 31 H 1.08009 * 120.07644 * 180.02562 * 8 6 5 32 32 H 0.97002 * 120.00495 * 0.02562 * 12 10 9 33 33 H 1.09005 * 113.61842 * 254.53458 * 15 13 12 34 34 H 1.08998 * 113.61907 * 25.43711 * 15 13 12 35 35 H 1.09000 * 109.46886 * 305.00098 * 18 16 15 36 36 H 1.09004 * 109.46753 * 64.99437 * 18 16 15 37 37 H 1.08007 * 125.95933 * 359.92811 * 20 19 18 38 38 H 1.07998 * 125.53094 * 180.02562 * 22 21 20 39 39 H 1.09001 * 113.61260 * 334.57137 * 24 13 12 40 40 H 1.09000 * 113.61380 * 105.46346 * 24 13 12 41 41 H 1.07997 * 120.06668 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7265 -0.0368 -2.1398 6 6 3.1918 -0.6822 -3.2731 7 35 4.2777 0.2485 -4.5103 8 6 2.8648 -2.0036 -3.5012 9 6 2.0630 -2.6886 -2.5867 10 6 1.7082 -4.1040 -2.8248 11 8 1.0103 -4.6982 -2.0265 12 7 2.1587 -4.7354 -3.9270 13 6 1.8077 -6.1381 -4.1627 14 1 0.8790 -6.4300 -3.6724 15 6 1.8792 -6.5507 -5.6423 16 6 2.4903 -7.8773 -5.1615 17 1 1.7491 -8.6466 -4.9452 18 6 3.6307 -8.3835 -6.0471 19 7 4.0640 -9.7024 -5.5792 20 6 4.1397 -10.8305 -6.3063 21 7 4.5701 -11.7883 -5.5260 22 6 4.7798 -11.3123 -4.2994 23 7 4.4893 -10.0379 -4.2834 24 6 2.9694 -7.1142 -3.9132 25 6 1.6017 -2.0332 -1.4442 26 1 -0.3934 0.4418 0.7650 27 1 1.7923 -0.5138 0.8901 28 1 1.5616 2.4678 -1.2086 29 1 1.5878 2.4586 1.2241 30 1 2.9850 0.9973 -1.9656 31 1 3.2284 -2.5064 -4.3852 32 1 2.7161 -4.2613 -4.5639 33 1 0.9020 -6.6648 -6.1116 34 1 2.5648 -5.9427 -6.2326 35 1 3.2841 -8.4594 -7.0777 36 1 4.4674 -7.6867 -5.9956 37 1 3.8882 -10.9290 -7.3521 38 1 5.1364 -11.8852 -3.4562 39 1 3.9536 -6.6605 -4.0296 40 1 2.8710 -7.6826 -2.9883 41 1 0.9848 -2.5592 -0.7307 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_12335870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:21 Heat of formation + Delta-G solvation = 91.718312 kcal Electronic energy + Delta-G solvation = -26767.048454 eV Core-core repulsion = 22698.059071 eV Total energy + Delta-G solvation = -4068.989383 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.047 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.95891 -41.72115 -40.53654 -39.34658 -37.82780 -35.58451 -34.31991 -33.68141 -32.87352 -32.13720 -30.48272 -29.08278 -27.05720 -26.74216 -25.91141 -23.95545 -22.84213 -22.71543 -22.31737 -21.56953 -20.67587 -18.90698 -18.66274 -18.33224 -17.77067 -17.46003 -16.79115 -16.73351 -16.23748 -16.22091 -16.06350 -15.67709 -15.45173 -15.17921 -14.97359 -14.85661 -14.58486 -14.25191 -14.03279 -13.74010 -13.62873 -13.45789 -13.17939 -12.88406 -12.85302 -12.43380 -12.25413 -12.03509 -11.94280 -11.87330 -11.50759 -11.40740 -11.15430 -10.96028 -10.77287 -10.66562 -10.55221 -10.35187 -10.07955 -9.90531 -4.99794 -0.53663 -0.17143 0.40887 0.72753 1.18046 1.47115 1.49938 1.54565 1.87921 1.97390 2.03364 2.42399 3.12411 3.30507 3.34477 3.44747 3.55341 3.55883 3.64413 3.74301 3.78029 3.86016 3.94308 3.97014 4.13670 4.14017 4.19760 4.27488 4.34861 4.47873 4.58544 4.70707 4.71138 4.73630 4.80231 4.91389 4.96830 5.04129 5.06578 5.13457 5.34151 5.35797 5.47725 5.50168 5.97771 6.35395 6.50751 7.02229 7.15881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.089 4.089 3 Si 0.759 3.241 4 C -0.079 4.079 5 C -0.063 4.063 6 C -0.099 4.099 7 Br -0.024 7.024 8 C -0.043 4.043 9 C -0.137 4.137 10 C 0.560 3.440 11 O -0.576 6.576 12 N -0.697 5.697 13 C 0.112 3.888 14 H 0.090 0.910 15 C -0.112 4.112 16 C -0.111 4.111 17 H 0.084 0.916 18 C 0.135 3.865 19 N -0.379 5.379 20 C 0.256 3.744 21 N -0.586 5.586 22 C 0.182 3.818 23 N -0.344 5.344 24 C -0.135 4.135 25 C -0.032 4.032 26 H 0.399 0.601 27 H 0.101 0.899 28 H -0.289 1.289 29 H -0.279 1.279 30 H 0.155 0.845 31 H 0.167 0.833 32 H 0.417 0.583 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.145 0.855 36 H 0.101 0.899 37 H 0.260 0.740 38 H 0.228 0.772 39 H 0.095 0.905 40 H 0.044 0.956 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.342 3.946 -5.403 7.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.197 4.197 3 Si 0.663 3.337 4 C -0.080 4.080 5 C -0.082 4.082 6 C -0.178 4.178 7 Br 0.062 6.938 8 C -0.063 4.063 9 C -0.141 4.141 10 C 0.348 3.652 11 O -0.457 6.457 12 N -0.349 5.349 13 C 0.008 3.992 14 H 0.108 0.892 15 C -0.151 4.151 16 C -0.131 4.131 17 H 0.102 0.898 18 C 0.014 3.986 19 N -0.170 5.170 20 C -0.040 4.040 21 N -0.314 5.314 22 C -0.120 4.120 23 N -0.172 5.172 24 C -0.174 4.174 25 C -0.052 4.052 26 H 0.250 0.750 27 H 0.119 0.881 28 H -0.216 1.216 29 H -0.206 1.206 30 H 0.172 0.828 31 H 0.185 0.815 32 H 0.256 0.744 33 H 0.110 0.890 34 H 0.141 0.859 35 H 0.163 0.837 36 H 0.119 0.881 37 H 0.275 0.725 38 H 0.245 0.755 39 H 0.113 0.887 40 H 0.063 0.937 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.238 4.593 -5.373 7.774 hybrid contribution -1.450 -0.333 0.938 1.758 sum 1.788 4.260 -4.435 6.405 Atomic orbital electron populations 1.86540 1.18147 1.80843 1.51256 1.25058 0.84475 1.12199 0.97976 0.94268 0.90239 0.71781 0.77456 1.19358 0.98483 0.93569 0.96601 1.21324 0.95017 1.00322 0.91570 1.21707 1.03122 0.95874 0.97122 1.96849 1.65369 1.75381 1.56246 1.21466 0.93979 0.92303 0.98581 1.19889 1.02827 0.93840 0.97581 1.18385 0.79046 0.86214 0.81597 1.90795 1.39724 1.68263 1.46895 1.45770 1.52637 1.12874 1.23582 1.22583 0.98602 0.79369 0.98687 0.89169 1.23310 1.03386 0.94408 0.93983 1.22517 0.97369 0.96982 0.96204 0.89785 1.22226 0.97460 0.79086 0.99813 1.50779 1.48185 1.11297 1.06706 1.26914 0.94906 0.81123 1.01045 1.70539 1.24038 1.33475 1.03362 1.26429 0.98730 0.90236 0.96628 1.78017 1.22274 1.16677 1.00249 1.23468 0.98949 0.96860 0.98144 1.21259 0.94647 0.93696 0.95579 0.75049 0.88095 1.21649 1.20565 0.82772 0.81540 0.74428 0.88959 0.85918 0.83718 0.88058 0.72472 0.75547 0.88695 0.93679 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.23 12.74 -148.98 -1.90 -3.13 16 2 C -0.09 0.10 2.81 71.24 0.20 0.30 16 3 Si 0.76 -2.46 29.78 68.60 2.04 -0.41 16 4 C -0.08 -0.13 5.42 -19.91 -0.11 -0.24 16 5 C -0.06 0.05 8.41 22.34 0.19 0.23 16 6 C -0.10 0.16 6.22 22.27 0.14 0.29 16 7 Br -0.02 0.07 33.69 -20.37 -0.69 -0.62 16 8 C -0.04 0.12 9.28 22.54 0.21 0.33 16 9 C -0.14 -0.35 5.87 -20.09 -0.12 -0.47 16 10 C 0.56 3.00 7.77 86.79 0.67 3.68 16 11 O -0.58 -8.50 15.97 -3.88 -0.06 -8.56 16 12 N -0.70 1.82 5.31 -442.91 -2.35 -0.53 16 13 C 0.11 -0.25 4.21 45.51 0.19 -0.06 16 14 H 0.09 0.34 7.50 -2.39 -0.02 0.33 16 15 C -0.11 1.17 7.39 31.12 0.23 1.40 16 16 C -0.11 0.73 3.86 -10.21 -0.04 0.69 16 17 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 18 C 0.13 -1.28 6.39 86.38 0.55 -0.72 16 19 N -0.38 0.43 3.69 -352.06 -1.30 -0.87 16 20 C 0.26 -0.43 12.63 180.36 2.28 1.84 16 21 N -0.59 -3.43 11.19 -204.00 -2.28 -5.71 16 22 C 0.18 1.02 13.03 180.76 2.36 3.38 16 23 N -0.34 -2.02 12.58 -61.24 -0.77 -2.79 16 24 C -0.14 0.22 7.45 31.18 0.23 0.45 16 25 C -0.03 -0.16 9.16 22.53 0.21 0.05 16 26 H 0.40 -2.38 8.74 -74.06 -0.65 -3.02 16 27 H 0.10 -0.48 7.96 -2.38 -0.02 -0.50 16 28 H -0.29 -0.97 7.11 99.48 0.71 -0.26 16 29 H -0.28 -0.22 7.11 99.48 0.71 0.49 16 30 H 0.16 -0.61 4.86 -2.91 -0.01 -0.63 16 31 H 0.17 -1.59 6.41 -2.91 -0.02 -1.61 16 32 H 0.42 -4.07 6.75 -92.71 -0.63 -4.69 16 33 H 0.09 -1.00 8.14 -2.38 -0.02 -1.02 16 34 H 0.12 -1.95 8.07 -2.39 -0.02 -1.97 16 35 H 0.15 -2.48 8.09 -2.39 -0.02 -2.50 16 36 H 0.10 -1.10 7.85 -2.38 -0.02 -1.12 16 37 H 0.26 -3.16 8.06 -2.91 -0.02 -3.18 16 38 H 0.23 0.09 8.06 -2.91 -0.02 0.06 16 39 H 0.09 -0.30 7.90 -2.39 -0.02 -0.32 16 40 H 0.04 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.13 1.02 7.65 -2.91 -0.02 1.00 16 Total: 0.00 -30.18 371.36 -0.25 -30.44 By element: Atomic # 1 Polarization: -18.84 SS G_CDS: -0.13 Total: -18.97 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 7.19 Total: 11.16 kcal Atomic # 7 Polarization: -3.20 SS G_CDS: -6.70 Total: -9.90 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -1.96 Total: -11.69 kcal Atomic # 14 Polarization: -2.46 SS G_CDS: 2.04 Total: -0.41 kcal Atomic # 35 Polarization: 0.07 SS G_CDS: -0.69 Total: -0.62 kcal Total: -30.18 -0.25 -30.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_12335870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.154 kcal (2) G-P(sol) polarization free energy of solvation -30.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds