Wall clock time and date at job start Tue Mar 9 2021 13:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86297 * 109.47128 * 2 1 4 4 C 1.50704 * 109.47292 * 239.99652 * 2 1 3 5 5 C 1.34193 * 126.53601 * 105.00128 * 4 2 1 6 6 N 1.36866 * 109.96441 * 180.02562 * 5 4 2 7 7 C 1.37398 * 109.98119 * 359.97438 * 6 5 4 8 8 C 1.39330 * 133.25010 * 179.97438 * 7 6 5 9 9 C 1.36355 * 120.23443 * 180.02562 * 8 7 6 10 10 C 1.40164 * 120.67276 * 0.02562 * 9 8 7 11 11 C 1.47653 * 119.97458 * 179.97438 * 10 9 8 12 12 O 1.21583 * 120.00000 * 180.02562 * 11 10 9 13 13 N 1.34777 * 119.99996 * 359.72613 * 11 10 9 14 14 C 1.46504 * 119.99854 * 180.27900 * 13 11 10 15 15 H 1.08995 * 112.84615 * 334.66197 * 14 13 11 16 16 C 1.53775 * 113.61442 * 105.85931 * 14 13 11 17 17 C 1.53957 * 87.02116 * 139.94966 * 16 14 13 18 18 H 1.08999 * 113.61746 * 89.19456 * 17 16 14 19 19 C 1.53000 * 113.66911 * 220.07046 * 17 16 14 20 20 N 1.46499 * 109.46581 * 272.55537 * 19 17 16 21 21 C 1.34435 * 126.81874 * 125.00607 * 20 19 17 22 22 N 1.30838 * 108.07263 * 179.97438 * 21 20 19 23 23 C 1.33234 * 109.83077 * 359.97438 * 22 21 20 24 24 N 1.30712 * 108.94718 * 359.75540 * 23 22 21 25 25 C 1.53781 * 87.10871 * 334.63585 * 17 16 14 26 26 C 1.39188 * 120.05314 * 0.23181 * 10 9 8 27 27 C 1.39237 * 119.39280 * 359.49549 * 26 10 9 28 28 H 0.96699 * 114.00205 * 60.00153 * 1 2 3 29 29 H 1.09001 * 109.46843 * 120.00130 * 2 1 3 30 30 H 1.48501 * 110.00111 * 298.67613 * 3 2 1 31 31 H 1.48500 * 110.00198 * 60.00117 * 3 2 1 32 32 H 1.07998 * 125.01849 * 0.02562 * 5 4 2 33 33 H 0.96994 * 125.00990 * 180.02562 * 6 5 4 34 34 H 1.07991 * 119.88227 * 0.02562 * 8 7 6 35 35 H 1.08004 * 119.66420 * 180.02562 * 9 8 7 36 36 H 0.97000 * 119.99736 * 0.27174 * 13 11 10 37 37 H 1.08995 * 113.61838 * 254.52898 * 16 14 13 38 38 H 1.09007 * 113.61723 * 25.43343 * 16 14 13 39 39 H 1.08997 * 109.47331 * 32.55927 * 19 17 16 40 40 H 1.09003 * 109.46934 * 152.55887 * 19 17 16 41 41 H 1.07992 * 125.96168 * 359.92304 * 21 20 19 42 42 H 1.08005 * 125.52546 * 179.97438 * 23 22 21 43 43 H 1.08999 * 113.61621 * 270.81069 * 25 17 16 44 44 H 1.09000 * 113.69278 * 139.91587 * 25 17 16 45 45 H 1.07999 * 120.30634 * 179.72553 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.4608 -0.1387 -2.3229 6 7 2.8023 -1.1005 -3.2348 7 6 2.4950 -2.3455 -2.7415 8 6 2.6331 -3.6350 -3.2508 9 6 2.2291 -4.7103 -2.5162 10 6 1.6703 -4.5368 -1.2425 11 6 1.2375 -5.7121 -0.4605 12 8 0.7524 -5.5622 0.6442 13 7 1.3748 -6.9508 -0.9738 14 6 0.9397 -8.1165 -0.2003 15 1 0.9429 -7.9363 0.8746 16 6 -0.3654 -8.7455 -0.7157 17 6 0.2788 -10.1156 -0.4364 18 1 0.1008 -10.4841 0.5739 19 6 -0.0157 -11.1635 -1.5116 20 7 -1.2725 -11.8470 -1.1959 21 6 -2.3470 -11.9671 -1.9948 22 7 -3.2598 -12.6455 -1.3481 23 6 -2.8066 -12.9746 -0.1392 24 7 -1.5916 -12.5126 -0.0012 25 6 1.6410 -9.4229 -0.6082 26 6 1.5182 -3.2572 -0.7164 27 6 1.9352 -2.1578 -1.4621 28 1 -0.3933 0.4417 -0.7650 29 1 1.7923 -0.5139 0.8900 30 1 1.5880 2.4585 -1.2243 31 1 1.5615 2.4679 1.2085 32 1 2.5973 0.9236 -2.4621 33 1 3.2030 -0.9286 -4.1013 34 1 3.0616 -3.7833 -4.2309 35 1 2.3408 -5.7058 -2.9198 36 1 1.7615 -7.0703 -1.8553 37 1 -1.2305 -8.5326 -0.0878 38 1 -0.5525 -8.5585 -1.7732 39 1 -0.1018 -10.6743 -2.4818 40 1 0.7957 -11.8907 -1.5421 41 1 -2.4406 -11.5718 -2.9954 42 1 -3.3530 -13.5355 0.6047 43 1 2.0036 -9.4214 -1.6361 44 1 2.3945 -9.7552 0.1059 45 1 1.0841 -3.1186 0.2627 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14644236_13287722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:16 Heat of formation + Delta-G solvation = 119.079981 kcal Electronic energy + Delta-G solvation = -29537.111309 eV Core-core repulsion = 25331.710608 eV Total energy + Delta-G solvation = -4205.400700 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.95539 -42.53392 -41.21045 -39.65794 -37.98845 -37.43372 -35.47483 -34.01317 -33.31553 -32.09146 -30.93486 -30.54576 -29.02111 -26.91273 -26.52562 -25.49503 -23.86501 -23.53816 -22.93200 -22.35400 -21.51758 -20.98772 -20.52757 -19.37843 -18.57549 -18.31208 -17.62470 -17.50613 -17.08793 -16.68362 -16.36482 -16.24591 -15.99517 -15.80489 -15.66158 -15.52621 -15.19219 -15.04868 -14.81510 -14.81187 -14.49142 -14.20010 -13.84296 -13.79961 -13.67362 -13.52077 -13.26392 -12.80200 -12.60358 -12.47319 -12.39685 -12.15335 -11.99120 -11.80182 -11.62872 -10.90657 -10.84142 -10.83561 -10.68582 -10.53975 -10.48472 -10.05811 -9.37269 -8.88045 -4.98164 -0.09197 0.14020 0.71915 1.27824 1.33906 1.42978 1.53483 1.91241 1.94395 1.98292 2.09652 2.14418 2.91680 3.21158 3.29542 3.35053 3.43955 3.47423 3.52663 3.62899 3.69440 3.75326 3.79791 3.81211 3.96821 4.03045 4.03903 4.23108 4.31416 4.35465 4.39149 4.44657 4.46304 4.54497 4.60278 4.70173 4.78894 4.83194 4.89740 4.97801 5.13790 5.20687 5.32359 5.33233 5.43854 5.52745 5.53524 5.56166 5.85619 5.93493 6.30793 6.50414 6.51196 7.18382 7.28940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.528 6.528 2 C -0.043 4.043 3 Si 0.687 3.313 4 C -0.187 4.187 5 C 0.059 3.941 6 N -0.585 5.585 7 C 0.119 3.881 8 C -0.134 4.134 9 C -0.066 4.066 10 C -0.170 4.170 11 C 0.565 3.435 12 O -0.536 6.536 13 N -0.720 5.720 14 C 0.128 3.872 15 H 0.118 0.882 16 C -0.148 4.148 17 C -0.121 4.121 18 H 0.110 0.890 19 C 0.141 3.859 20 N -0.377 5.377 21 C 0.253 3.747 22 N -0.547 5.547 23 C 0.199 3.801 24 N -0.317 5.317 25 C -0.136 4.136 26 C 0.009 3.991 27 C -0.102 4.102 28 H 0.373 0.627 29 H 0.116 0.884 30 H -0.260 1.260 31 H -0.255 1.255 32 H 0.176 0.824 33 H 0.421 0.579 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.399 0.601 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.217 0.783 42 H 0.217 0.783 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.871 2.442 -7.828 10.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.334 6.334 2 C -0.153 4.153 3 Si 0.588 3.412 4 C -0.194 4.194 5 C -0.068 4.068 6 N -0.187 5.187 7 C 0.010 3.990 8 C -0.155 4.155 9 C -0.086 4.086 10 C -0.174 4.174 11 C 0.354 3.646 12 O -0.413 6.413 13 N -0.371 5.371 14 C 0.023 3.977 15 H 0.136 0.864 16 C -0.187 4.187 17 C -0.141 4.141 18 H 0.128 0.872 19 C 0.019 3.981 20 N -0.168 5.168 21 C -0.044 4.044 22 N -0.274 5.274 23 C -0.104 4.104 24 N -0.145 5.145 25 C -0.175 4.175 26 C -0.011 4.011 27 C -0.107 4.107 28 H 0.220 0.780 29 H 0.134 0.866 30 H -0.185 1.185 31 H -0.180 1.180 32 H 0.193 0.807 33 H 0.259 0.741 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.235 0.765 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.233 0.767 42 H 0.233 0.767 43 H 0.109 0.891 44 H 0.102 0.898 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.641 3.000 -6.075 9.487 hybrid contribution -0.612 -0.070 -1.774 1.878 sum 6.029 2.930 -7.849 10.322 Atomic orbital electron populations 1.86644 1.17893 1.79873 1.48974 1.24372 0.83534 1.10071 0.97321 0.95195 0.91399 0.74113 0.80534 1.20705 1.08985 0.91924 0.97826 1.21761 1.01014 0.94457 0.89556 1.41737 1.54637 1.04151 1.18159 1.18442 0.99857 0.86514 0.94187 1.19661 1.05798 0.88860 1.01132 1.20564 0.96793 0.98288 0.92985 1.19540 1.08283 0.93267 0.96316 1.18231 0.77702 0.82992 0.85677 1.90807 1.44207 1.85976 1.20300 1.45854 1.64703 1.05582 1.20966 1.22421 0.94311 0.83070 0.97944 0.86413 1.23617 0.98442 0.94411 1.02197 1.22738 0.97180 0.93562 1.00586 0.87169 1.21867 0.82823 0.94521 0.98872 1.50557 1.14264 1.40679 1.11325 1.26090 0.83272 0.96350 0.98709 1.70561 1.31016 1.19032 1.06797 1.26056 0.90636 0.98951 0.94779 1.78036 1.17424 1.15419 1.03618 1.23362 0.96496 0.94647 1.02979 1.20715 0.92289 0.89206 0.98874 1.18920 1.04491 0.92936 0.94326 0.77953 0.86583 1.18490 1.17983 0.80685 0.74114 0.85448 0.85473 0.76473 0.90710 0.89475 0.87927 0.88910 0.76654 0.76666 0.89070 0.89778 0.84331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.07 12.88 -35.23 -0.45 -1.53 16 2 C -0.04 -0.01 3.06 36.01 0.11 0.10 16 3 Si 0.69 -1.10 30.82 -169.99 -5.24 -6.34 16 4 C -0.19 -0.05 5.58 -102.69 -0.57 -0.62 16 5 C 0.06 -0.12 10.43 -16.73 -0.17 -0.29 16 6 N -0.58 1.37 6.05 -10.61 -0.06 1.30 16 7 C 0.12 0.00 7.27 -83.95 -0.61 -0.61 16 8 C -0.13 0.17 10.00 -39.85 -0.40 -0.22 16 9 C -0.07 0.08 9.46 -39.54 -0.37 -0.30 16 10 C -0.17 -0.29 5.87 -104.98 -0.62 -0.91 16 11 C 0.57 1.61 7.76 -12.42 -0.10 1.51 16 12 O -0.54 -3.77 15.95 5.29 0.08 -3.68 16 13 N -0.72 0.62 5.31 -54.02 -0.29 0.33 16 14 C 0.13 -0.11 4.21 -67.12 -0.28 -0.40 16 15 H 0.12 0.17 7.50 -51.93 -0.39 -0.22 16 16 C -0.15 0.21 7.45 -25.83 -0.19 0.01 16 17 C -0.12 0.28 3.88 -89.71 -0.35 -0.07 16 18 H 0.11 0.00 8.01 -51.93 -0.42 -0.42 16 19 C 0.14 -0.44 6.39 -4.04 -0.03 -0.47 16 20 N -0.38 -0.13 3.69 -62.63 -0.23 -0.36 16 21 C 0.25 0.06 12.63 -90.64 -1.14 -1.09 16 22 N -0.55 -1.76 11.19 -15.83 -0.18 -1.94 16 23 C 0.20 0.52 13.03 -91.82 -1.20 -0.68 16 24 N -0.32 -0.97 12.46 29.29 0.36 -0.60 16 25 C -0.14 0.49 7.39 -25.92 -0.19 0.29 16 26 C 0.01 0.03 9.64 -38.86 -0.37 -0.35 16 27 C -0.10 -0.19 6.34 -105.16 -0.67 -0.86 16 28 H 0.37 -0.42 8.70 45.56 0.40 -0.02 16 29 H 0.12 0.03 7.96 -51.93 -0.41 -0.38 16 30 H -0.26 0.14 7.00 56.52 0.40 0.54 16 31 H -0.26 -0.54 7.11 56.52 0.40 -0.14 16 32 H 0.18 -0.82 6.27 -52.49 -0.33 -1.15 16 33 H 0.42 -2.26 8.96 -40.82 -0.37 -2.62 16 34 H 0.13 -0.48 8.06 -52.49 -0.42 -0.91 16 35 H 0.13 -0.56 6.36 -52.48 -0.33 -0.89 16 36 H 0.40 -1.56 6.71 -40.82 -0.27 -1.83 16 37 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 38 H 0.09 -0.23 7.90 -51.92 -0.41 -0.64 16 39 H 0.10 -0.61 7.80 -51.93 -0.40 -1.02 16 40 H 0.09 -0.33 8.14 -51.93 -0.42 -0.76 16 41 H 0.22 -0.91 8.06 -52.49 -0.42 -1.33 16 42 H 0.22 -0.09 8.06 -52.48 -0.42 -0.52 16 43 H 0.09 -0.51 8.07 -51.93 -0.42 -0.93 16 44 H 0.08 -0.27 8.14 -51.93 -0.42 -0.70 16 45 H 0.14 0.58 7.64 -52.49 -0.40 0.18 16 LS Contribution 383.35 15.07 5.78 5.78 Total: 0.00 -13.19 383.35 -12.88 -26.08 By element: Atomic # 1 Polarization: -8.60 SS G_CDS: -5.50 Total: -14.10 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -7.16 Total: -4.93 kcal Atomic # 7 Polarization: -0.88 SS G_CDS: -0.39 Total: -1.28 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.37 Total: -5.21 kcal Atomic # 14 Polarization: -1.10 SS G_CDS: -5.24 Total: -6.34 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -13.19 -12.88 -26.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13287722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.156 kcal (2) G-P(sol) polarization free energy of solvation -13.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds