Wall clock time and date at job start Tue Mar 9 2021 13:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86298 * 109.47196 * 2 1 4 4 C 1.50699 * 109.47173 * 120.00160 * 2 1 3 5 5 C 1.38502 * 119.80196 * 244.99812 * 4 2 1 6 6 C 1.37833 * 120.29966 * 180.02562 * 5 4 2 7 7 C 1.39675 * 119.90736 * 359.97438 * 6 5 4 8 8 C 1.47531 * 120.19352 * 179.97438 * 7 6 5 9 9 O 1.21582 * 119.99841 * 180.02562 * 8 7 6 10 10 N 1.34778 * 120.00000 * 359.97438 * 8 7 6 11 11 C 1.46494 * 120.00026 * 180.02562 * 10 8 7 12 12 H 1.08996 * 112.90952 * 23.75045 * 11 10 8 13 13 C 1.53785 * 113.61459 * 155.00350 * 11 10 8 14 14 C 1.53779 * 87.08132 * 139.98147 * 13 11 10 15 15 H 1.09003 * 113.61704 * 89.19916 * 14 13 11 16 16 C 1.53004 * 113.61212 * 220.01666 * 14 13 11 17 17 N 1.46505 * 109.47120 * 184.99763 * 16 14 13 18 18 C 1.34428 * 126.82137 * 125.02328 * 17 16 14 19 19 N 1.30829 * 108.07758 * 179.97438 * 18 17 16 20 20 C 1.33239 * 109.82920 * 0.02562 * 19 18 17 21 21 N 1.30714 * 108.94945 * 359.97438 * 20 19 18 22 22 C 1.53782 * 87.08322 * 334.56532 * 14 13 11 23 23 C 1.40174 * 119.61170 * 0.25599 * 7 6 5 24 24 O 1.35660 * 120.14412 * 179.74693 * 23 7 6 25 25 C 1.38096 * 119.80686 * 65.02236 * 4 2 1 26 26 H 0.96709 * 114.00237 * 299.99913 * 1 2 3 27 27 H 1.09004 * 109.47046 * 240.00251 * 2 1 3 28 28 H 1.48502 * 110.00056 * 300.00426 * 3 2 1 29 29 H 1.48501 * 110.00288 * 61.32044 * 3 2 1 30 30 H 1.07997 * 119.85566 * 0.02562 * 5 4 2 31 31 H 1.07999 * 120.05089 * 180.02562 * 6 5 4 32 32 H 0.97004 * 120.00037 * 0.02562 * 10 8 7 33 33 H 1.09001 * 113.61577 * 25.42864 * 13 11 10 34 34 H 1.09006 * 113.60844 * 254.52705 * 13 11 10 35 35 H 1.09005 * 109.46732 * 65.00193 * 16 14 13 36 36 H 1.08994 * 109.47332 * 305.00146 * 16 14 13 37 37 H 1.08003 * 125.95916 * 0.03061 * 18 17 16 38 38 H 1.07995 * 125.52955 * 180.02562 * 20 19 18 39 39 H 1.08990 * 113.61540 * 139.98295 * 22 14 13 40 40 H 1.09000 * 113.61554 * 270.88676 * 22 14 13 41 41 H 0.96702 * 113.99990 * 90.00919 * 24 23 7 42 42 H 1.08003 * 119.95423 * 359.95230 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6397 -0.0070 2.1905 6 6 3.1043 -0.6466 3.3195 7 6 2.8599 -2.0102 3.4978 8 6 3.3549 -2.7013 4.7036 9 8 3.1405 -3.8885 4.8549 10 7 4.0455 -2.0169 5.6369 11 6 4.5374 -2.7032 6.8340 12 1 4.6596 -3.7764 6.6877 13 6 5.7607 -2.0255 7.4737 14 6 5.1222 -2.3380 8.8374 15 1 5.4054 -3.3108 9.2395 16 6 5.2712 -1.2073 9.8573 17 7 4.7406 -1.6438 11.1512 18 6 5.3873 -1.6407 12.3297 19 7 4.5717 -2.1043 13.2416 20 6 3.4007 -2.4129 12.6859 21 7 3.4550 -2.1483 11.4069 22 6 3.7655 -2.3398 8.1134 23 6 2.1468 -2.7195 2.5214 24 8 1.9078 -4.0453 2.6811 25 6 1.6831 -2.0590 1.3938 26 1 -0.3934 0.4417 0.7651 27 1 1.7923 -0.5138 -0.8900 28 1 1.5614 2.4679 -1.2084 29 1 1.5879 2.4586 1.2242 30 1 2.8288 1.0475 2.0539 31 1 3.6559 -0.0941 4.0658 32 1 4.2168 -1.0698 5.5160 33 1 5.8314 -0.9592 7.2587 34 1 6.6960 -2.5568 7.2975 35 1 4.7180 -0.3331 9.5140 36 1 6.3252 -0.9512 9.9646 37 1 6.4027 -1.3120 12.4950 38 1 2.5451 -2.8155 13.2075 39 1 3.0901 -3.1246 8.4537 40 1 3.2907 -1.3594 8.0733 41 1 1.0822 -4.2432 3.1441 42 1 1.1296 -2.6006 0.6409 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14644236_13422076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:43 Heat of formation + Delta-G solvation = 44.317766 kcal Electronic energy + Delta-G solvation = -27148.852558 eV Core-core repulsion = 23098.943544 eV Total energy + Delta-G solvation = -4049.909014 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.96237 -41.75389 -40.62637 -39.32009 -38.44083 -37.24147 -35.45629 -34.18848 -32.56370 -32.14147 -31.11767 -29.10834 -27.49187 -26.71493 -24.76634 -23.91961 -23.32842 -22.84540 -22.28786 -21.58604 -20.79982 -19.43131 -18.68082 -18.35771 -18.26207 -17.49867 -16.79626 -16.75487 -16.55267 -16.25092 -16.13165 -15.87377 -15.83546 -15.64926 -15.29940 -15.00507 -14.83603 -14.48800 -14.46085 -13.75939 -13.65127 -13.44341 -13.29941 -13.10281 -12.99391 -12.84516 -12.39100 -12.24898 -12.11613 -11.90469 -11.59049 -11.40122 -10.98726 -10.93504 -10.77727 -10.64144 -10.54488 -10.23214 -9.99205 -9.78928 -4.89444 -0.42765 0.13944 0.72415 1.28161 1.48250 1.61409 1.69000 1.99687 2.02590 2.07344 2.55626 3.09682 3.32196 3.39892 3.43564 3.48895 3.55552 3.63716 3.70689 3.75533 3.79246 3.95372 4.07449 4.13801 4.21729 4.26880 4.34594 4.41512 4.58832 4.63003 4.72141 4.73145 4.75050 4.82524 4.98196 5.02194 5.05992 5.11944 5.19260 5.23542 5.35946 5.47149 5.54403 5.59386 5.97801 6.45710 6.48185 6.67384 7.15504 7.17046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.096 4.096 3 Si 0.783 3.217 4 C -0.070 4.070 5 C -0.132 4.132 6 C -0.051 4.051 7 C -0.180 4.180 8 C 0.554 3.446 9 O -0.569 6.569 10 N -0.699 5.699 11 C 0.114 3.886 12 H 0.086 0.914 13 C -0.112 4.112 14 C -0.112 4.112 15 H 0.082 0.918 16 C 0.135 3.865 17 N -0.379 5.379 18 C 0.256 3.744 19 N -0.586 5.586 20 C 0.182 3.818 21 N -0.344 5.344 22 C -0.135 4.135 23 C 0.149 3.851 24 O -0.499 6.499 25 C -0.140 4.140 26 H 0.388 0.612 27 H 0.124 0.876 28 H -0.308 1.308 29 H -0.267 1.267 30 H 0.164 0.836 31 H 0.172 0.828 32 H 0.417 0.583 33 H 0.125 0.875 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.145 0.855 37 H 0.260 0.740 38 H 0.228 0.772 39 H 0.041 0.959 40 H 0.095 0.905 41 H 0.405 0.595 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.619 9.123 -0.386 11.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.204 4.204 3 Si 0.686 3.314 4 C -0.071 4.071 5 C -0.149 4.149 6 C -0.069 4.069 7 C -0.183 4.183 8 C 0.342 3.658 9 O -0.449 6.449 10 N -0.352 5.352 11 C 0.009 3.991 12 H 0.104 0.896 13 C -0.150 4.150 14 C -0.132 4.132 15 H 0.100 0.900 16 C 0.014 3.986 17 N -0.170 5.170 18 C -0.040 4.040 19 N -0.315 5.315 20 C -0.121 4.121 21 N -0.173 5.173 22 C -0.174 4.174 23 C 0.103 3.897 24 O -0.312 6.312 25 C -0.159 4.159 26 H 0.238 0.762 27 H 0.142 0.858 28 H -0.237 1.237 29 H -0.193 1.193 30 H 0.181 0.819 31 H 0.189 0.811 32 H 0.256 0.744 33 H 0.143 0.857 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.163 0.837 37 H 0.276 0.724 38 H 0.244 0.756 39 H 0.060 0.940 40 H 0.113 0.887 41 H 0.265 0.735 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.393 8.591 -1.333 10.792 hybrid contribution -1.884 -0.541 0.585 2.046 sum 4.509 8.050 -0.749 9.257 Atomic orbital electron populations 1.86609 1.18298 1.80523 1.50246 1.25501 0.83690 1.12935 0.98227 0.93903 0.89884 0.70713 0.76857 1.20490 0.96523 0.93417 0.96637 1.21292 0.98711 1.01358 0.93553 1.21512 0.96339 0.91165 0.97917 1.20472 1.06356 0.95702 0.95800 1.18410 0.78052 0.86246 0.83088 1.90811 1.58369 1.16902 1.78789 1.45731 1.55394 1.13662 1.20396 1.22500 0.96221 0.97728 0.82687 0.89606 1.23314 0.96736 1.03463 0.91488 1.22490 0.97252 0.98968 0.94457 0.90011 1.22239 1.02034 0.96836 0.77442 1.50794 1.08903 1.46990 1.10292 1.26919 1.01035 0.95314 0.80702 1.70537 1.03510 1.22728 1.34677 1.26418 0.97569 0.98900 0.89165 1.78011 0.99892 1.21206 1.18150 1.23437 0.96733 1.02234 0.94970 1.18802 0.94974 0.83238 0.92725 1.84717 1.46997 1.19230 1.80274 1.21344 1.01590 0.94762 0.98217 0.76241 0.85842 1.23691 1.19316 0.81876 0.81066 0.74398 0.85717 0.89161 0.87965 0.83693 0.72432 0.75593 0.93976 0.88657 0.73505 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.15 12.83 -148.98 -1.91 -2.06 16 2 C -0.10 0.33 2.79 71.24 0.20 0.53 16 3 Si 0.78 -5.05 29.86 68.60 2.05 -3.01 16 4 C -0.07 0.19 5.35 -19.84 -0.11 0.09 16 5 C -0.13 0.92 8.64 22.24 0.19 1.11 16 6 C -0.05 0.33 9.54 22.52 0.21 0.55 16 7 C -0.18 -0.30 5.89 -20.01 -0.12 -0.42 16 8 C 0.55 2.84 7.76 86.69 0.67 3.52 16 9 O -0.57 -8.48 14.76 16.94 0.25 -8.23 16 10 N -0.70 2.38 5.30 -443.21 -2.35 0.03 16 11 C 0.11 -0.28 4.24 45.52 0.19 -0.09 16 12 H 0.09 0.38 7.46 -2.39 -0.02 0.36 16 13 C -0.11 1.21 7.39 31.12 0.23 1.44 16 14 C -0.11 0.77 3.85 -10.27 -0.04 0.73 16 15 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 16 C 0.13 -1.35 6.39 86.38 0.55 -0.80 16 17 N -0.38 0.55 3.69 -352.05 -1.30 -0.75 16 18 C 0.26 -0.51 12.63 180.36 2.28 1.77 16 19 N -0.59 -3.32 11.19 -204.01 -2.28 -5.60 16 20 C 0.18 1.00 13.03 180.77 2.36 3.35 16 21 N -0.34 -1.96 12.57 -61.25 -0.77 -2.73 16 22 C -0.13 0.27 7.43 31.12 0.23 0.50 16 23 C 0.15 0.75 6.72 22.84 0.15 0.90 16 24 O -0.50 -4.32 11.58 -68.85 -0.80 -5.11 16 25 C -0.14 -0.27 9.60 22.34 0.21 -0.05 16 26 H 0.39 -2.32 8.70 -74.05 -0.64 -2.96 16 27 H 0.12 -0.49 7.96 -2.38 -0.02 -0.51 16 28 H -0.31 -0.81 7.11 99.48 0.71 -0.11 16 29 H -0.27 1.27 7.00 99.48 0.70 1.97 16 30 H 0.16 -2.04 4.81 -2.91 -0.01 -2.05 16 31 H 0.17 -2.56 6.40 -2.91 -0.02 -2.58 16 32 H 0.42 -4.77 6.76 -92.71 -0.63 -5.40 16 33 H 0.12 -2.11 8.08 -2.39 -0.02 -2.13 16 34 H 0.09 -1.00 8.14 -2.38 -0.02 -1.02 16 35 H 0.10 -1.19 7.84 -2.38 -0.02 -1.21 16 36 H 0.15 -2.57 8.09 -2.39 -0.02 -2.59 16 37 H 0.26 -3.26 8.06 -2.91 -0.02 -3.28 16 38 H 0.23 0.07 8.06 -2.91 -0.02 0.04 16 39 H 0.04 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.09 -0.37 7.90 -2.39 -0.02 -0.39 16 41 H 0.41 0.90 9.06 -74.06 -0.67 0.23 16 42 H 0.13 0.34 8.06 -2.91 -0.02 0.31 16 Total: 0.00 -34.94 358.81 -0.70 -35.65 By element: Atomic # 1 Polarization: -20.51 SS G_CDS: -0.81 Total: -21.32 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 7.22 Total: 13.14 kcal Atomic # 7 Polarization: -2.35 SS G_CDS: -6.70 Total: -9.05 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -2.46 Total: -15.40 kcal Atomic # 14 Polarization: -5.05 SS G_CDS: 2.05 Total: -3.01 kcal Total: -34.94 -0.70 -35.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14644236_13422076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.963 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds