Wall clock time and date at job start Tue Mar 9 2021 13:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45199 * 109.47482 * 2 1 4 4 C 1.34228 * 117.00436 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00050 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00108 * 179.97438 * 4 3 2 7 7 H 1.08992 * 109.47284 * 300.00185 * 6 4 3 8 8 C 1.53002 * 109.46958 * 60.00103 * 6 4 3 9 9 C 1.52997 * 109.46978 * 180.02562 * 8 6 4 10 10 C 1.53006 * 109.47164 * 299.99874 * 9 8 6 11 11 H 1.08998 * 109.46505 * 299.99708 * 10 9 8 12 12 C 1.52992 * 109.47223 * 180.02562 * 10 9 8 13 13 N 1.46499 * 109.47658 * 64.99659 * 12 10 9 14 14 C 1.34782 * 120.00273 * 180.02562 * 13 12 10 15 15 O 1.21688 * 119.99985 * 0.02562 * 14 13 12 16 16 C 1.46424 * 119.99701 * 179.97438 * 14 13 12 17 17 C 1.34812 * 120.00058 * 179.97438 * 16 14 13 18 18 C 1.47202 * 120.00170 * 180.02562 * 17 16 14 19 19 C 1.39830 * 120.17337 * 359.72195 * 18 17 16 20 20 C 1.37887 * 119.82704 * 179.76552 * 19 18 17 21 21 C 1.38400 * 120.17352 * 0.49693 * 20 19 18 22 22 C 1.50697 * 119.82973 * 179.76455 * 21 20 19 23 23 O 1.42908 * 109.46722 * 245.01846 * 22 21 20 24 24 Si 1.86302 * 109.47312 * 5.01656 * 22 21 20 25 25 C 1.38398 * 120.34067 * 359.77927 * 21 20 19 26 26 C 1.37894 * 120.17447 * 359.96008 * 25 21 20 27 27 C 1.52997 * 109.47127 * 59.99836 * 10 9 8 28 28 C 1.52996 * 109.46990 * 179.97438 * 6 4 3 29 29 H 1.09001 * 109.47508 * 59.99424 * 1 2 3 30 30 H 1.08999 * 109.47442 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47020 * 299.99915 * 1 2 3 32 32 H 1.09006 * 109.47020 * 240.00085 * 2 1 3 33 33 H 1.09001 * 109.47526 * 120.00019 * 2 1 3 34 34 H 1.09002 * 109.47097 * 299.99808 * 8 6 4 35 35 H 1.09001 * 109.47142 * 59.99773 * 8 6 4 36 36 H 1.09001 * 109.47375 * 59.99908 * 9 8 6 37 37 H 1.09000 * 109.47140 * 179.97438 * 9 8 6 38 38 H 1.09001 * 109.47563 * 185.00049 * 12 10 9 39 39 H 1.09004 * 109.47313 * 304.99704 * 12 10 9 40 40 H 0.97002 * 119.99938 * 0.02562 * 13 12 10 41 41 H 1.08002 * 120.00365 * 0.02562 * 16 14 13 42 42 H 1.08002 * 119.99577 * 0.02562 * 17 16 14 43 43 H 1.07998 * 120.08241 * 0.02562 * 19 18 17 44 44 H 1.08009 * 119.91734 * 180.25405 * 20 19 18 45 45 H 1.09000 * 109.47354 * 125.02150 * 22 21 20 46 46 H 0.96704 * 113.99655 * 179.97438 * 23 22 21 47 47 H 1.48504 * 109.99901 * 300.00227 * 24 22 21 48 48 H 1.48500 * 109.99791 * 61.32111 * 24 22 21 49 49 H 1.08005 * 119.91402 * 179.97438 * 25 21 20 50 50 H 1.08001 * 120.08493 * 179.97438 * 26 25 21 51 51 H 1.09002 * 109.47153 * 180.02562 * 27 10 9 52 52 H 1.09001 * 109.46832 * 60.00321 * 27 10 9 53 53 H 1.09004 * 109.47368 * 60.00232 * 28 6 4 54 54 H 1.09001 * 109.47372 * 300.00388 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5845 3.4693 -0.8911 8 6 3.4496 3.6847 1.2481 9 6 4.0339 5.0987 1.2471 10 6 5.5619 5.0192 1.2463 11 1 5.8984 4.4876 2.1363 12 6 6.1462 6.4331 1.2460 13 7 5.7939 7.1075 2.4979 14 6 6.2034 8.3721 2.7206 15 8 6.8655 8.9539 1.8816 16 6 5.8508 9.0462 3.9717 17 6 6.2608 10.3109 4.1948 18 6 5.9068 10.9884 5.4528 19 6 5.1404 10.3257 6.4164 20 6 4.8170 10.9654 7.5943 21 6 5.2401 12.2637 7.8197 22 6 4.8777 12.9572 9.1076 23 8 4.0191 14.0646 8.8269 24 14 3.9990 11.7596 10.2321 25 6 5.9941 12.9283 6.8684 26 6 6.3302 12.3003 5.6877 27 6 6.0330 4.2718 -0.0029 28 6 5.4486 2.8573 -0.0010 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.3611 3.7417 1.2484 35 1 3.7859 3.1527 2.1381 36 1 3.6973 5.6304 0.3571 37 1 3.6979 5.6312 2.1369 38 1 7.2310 6.3781 1.1558 39 1 5.7397 6.9941 0.4044 40 1 5.2658 6.6439 3.1666 41 1 5.2628 8.5300 4.7162 42 1 6.8491 10.8270 3.4505 43 1 4.8062 9.3139 6.2403 44 1 4.2285 10.4533 8.3414 45 1 5.7845 13.3151 9.5952 46 1 3.7448 14.5584 9.6118 47 1 2.7608 11.2644 9.5786 48 1 4.8928 10.6191 10.5571 49 1 6.3204 13.9416 7.0513 50 1 6.9183 12.8205 4.9461 51 1 7.1215 4.2148 -0.0032 52 1 5.6964 4.8035 -0.8929 53 1 5.7846 2.3247 -0.8908 54 1 5.7845 2.3255 0.8892 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_12360594.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:15 Heat of formation + Delta-G solvation = -128.631163 kcal Electronic energy + Delta-G solvation = -32305.379120 eV Core-core repulsion = 27787.179301 eV Total energy + Delta-G solvation = -4518.199818 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.197 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.86041 -41.02661 -40.54258 -39.48417 -37.78337 -37.70432 -35.98382 -35.20980 -33.18157 -32.44395 -32.23786 -31.77137 -31.32893 -28.13389 -26.78575 -24.85172 -24.18600 -23.84941 -23.69335 -23.01253 -21.94230 -21.64230 -20.89070 -20.37346 -18.76776 -18.70728 -18.37466 -17.70363 -17.66849 -17.45519 -17.11650 -16.66125 -16.49033 -16.14539 -15.85936 -15.45212 -15.29359 -15.21169 -15.00827 -14.95282 -14.73928 -14.65231 -14.37814 -14.09514 -13.88097 -13.85724 -13.71142 -13.63146 -13.50986 -13.27325 -13.04042 -13.01881 -12.91477 -12.58618 -12.38677 -12.27623 -12.13770 -12.04668 -11.96224 -11.88860 -11.60623 -11.48131 -11.41130 -11.28182 -11.14940 -11.04193 -10.30893 -10.16679 -10.12137 -9.33092 -4.93826 -0.64518 0.24013 0.79957 1.07666 1.29645 1.61746 1.64379 1.95558 2.16567 2.18081 2.68479 3.37310 3.39935 3.48564 3.56352 3.62953 3.65631 3.74452 3.83755 3.90191 3.93034 3.95783 4.01335 4.08255 4.11746 4.14837 4.21286 4.25386 4.29206 4.31290 4.36340 4.43464 4.47733 4.49143 4.63735 4.70242 4.71819 4.79372 4.81451 4.85954 4.86313 4.94330 4.97984 5.04707 5.06354 5.08879 5.10468 5.14935 5.19539 5.27316 5.29567 5.35104 5.37413 5.42242 5.48404 5.49876 5.76740 6.49952 6.63724 6.89024 7.17620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.543 6.543 6 C -0.077 4.077 7 H 0.125 0.875 8 C -0.104 4.104 9 C -0.110 4.110 10 C -0.092 4.092 11 H 0.087 0.913 12 C 0.125 3.875 13 N -0.710 5.710 14 C 0.541 3.459 15 O -0.591 6.591 16 C -0.208 4.208 17 C -0.021 4.021 18 C -0.081 4.081 19 C -0.097 4.097 20 C -0.144 4.144 21 C -0.081 4.081 22 C -0.083 4.083 23 O -0.564 6.564 24 Si 0.773 3.227 25 C -0.103 4.103 26 C -0.098 4.098 27 C -0.107 4.107 28 C -0.099 4.099 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.416 0.584 41 H 0.158 0.842 42 H 0.129 0.871 43 H 0.153 0.847 44 H 0.122 0.878 45 H 0.095 0.905 46 H 0.404 0.596 47 H -0.294 1.294 48 H -0.288 1.288 49 H 0.142 0.858 50 H 0.147 0.853 51 H 0.075 0.925 52 H 0.077 0.923 53 H 0.064 0.936 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.173 1.280 6.017 7.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.433 6.433 6 C -0.096 4.096 7 H 0.143 0.857 8 C -0.142 4.142 9 C -0.147 4.147 10 C -0.111 4.111 11 H 0.105 0.895 12 C 0.001 3.999 13 N -0.362 5.362 14 C 0.331 3.669 15 O -0.474 6.474 16 C -0.229 4.229 17 C -0.040 4.040 18 C -0.081 4.081 19 C -0.115 4.115 20 C -0.162 4.162 21 C -0.082 4.082 22 C -0.193 4.193 23 O -0.374 6.374 24 Si 0.679 3.321 25 C -0.121 4.121 26 C -0.115 4.115 27 C -0.145 4.145 28 C -0.137 4.137 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.254 0.746 41 H 0.176 0.824 42 H 0.146 0.854 43 H 0.171 0.829 44 H 0.139 0.861 45 H 0.113 0.887 46 H 0.255 0.745 47 H -0.222 1.222 48 H -0.215 1.215 49 H 0.160 0.840 50 H 0.165 0.835 51 H 0.094 0.906 52 H 0.095 0.905 53 H 0.083 0.917 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.748 0.316 4.921 6.194 hybrid contribution 0.295 -0.642 -0.422 0.822 sum -3.454 -0.325 4.500 5.682 Atomic orbital electron populations 1.21820 0.90628 1.04247 1.03772 1.23235 0.96958 0.79481 1.02336 1.86517 1.24354 1.33333 1.83480 1.24426 0.80494 0.93440 0.70912 1.90667 1.61163 1.44573 1.46861 1.21267 0.96599 0.88128 1.03577 0.85722 1.21497 1.01761 0.95808 0.95132 1.21606 0.93651 0.95649 1.03786 1.21384 0.96113 0.93540 1.00021 0.89506 1.21397 0.99806 0.92656 0.85997 1.45802 1.55329 1.13753 1.21280 1.18647 0.78963 0.82030 0.87215 1.90816 1.41473 1.66673 1.48455 1.23023 1.05584 0.96695 0.97573 1.22352 0.93709 0.94124 0.93860 1.19127 0.99779 0.94859 0.94338 1.21561 0.96666 1.00882 0.92352 1.21012 1.01448 0.95421 0.98278 1.19924 0.97699 0.94058 0.96480 1.24885 0.99327 0.96555 0.98519 1.86445 1.67802 1.44279 1.38879 0.94300 0.76780 0.77435 0.83618 1.21181 0.97354 1.00532 0.92993 1.21730 0.98444 0.93794 0.97580 1.21489 1.01118 0.93950 0.97931 1.21389 0.91572 0.97686 1.03029 0.91265 0.88626 0.91135 0.91633 0.91506 0.89866 0.91387 0.90779 0.89976 0.92315 0.91909 0.74617 0.82433 0.85354 0.82932 0.86055 0.88725 0.74483 1.22230 1.21502 0.84032 0.83527 0.90642 0.90454 0.91706 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.52 10.29 71.98 0.74 1.26 16 2 C 0.05 0.07 6.19 71.98 0.45 0.52 16 3 O -0.36 -1.26 10.12 -51.40 -0.52 -1.78 16 4 C 0.46 2.12 7.26 71.24 0.52 2.64 16 5 O -0.54 -6.15 15.73 21.96 0.35 -5.81 16 6 C -0.08 0.16 2.63 -11.54 -0.03 0.13 16 7 H 0.13 -0.61 8.14 -2.39 -0.02 -0.63 16 8 C -0.10 0.56 5.13 30.59 0.16 0.72 16 9 C -0.11 0.81 5.08 30.60 0.16 0.97 16 10 C -0.09 0.56 2.22 -10.79 -0.02 0.53 16 11 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 12 C 0.13 -0.22 5.07 86.38 0.44 0.21 16 13 N -0.71 1.50 5.28 -467.36 -2.47 -0.97 16 14 C 0.54 2.52 7.74 86.37 0.67 3.19 16 15 O -0.59 -8.28 16.23 -4.31 -0.07 -8.35 16 16 C -0.21 -0.06 9.41 23.62 0.22 0.16 16 17 C -0.02 -0.05 9.46 23.84 0.23 0.17 16 18 C -0.08 -0.22 5.87 -20.15 -0.12 -0.34 16 19 C -0.10 -0.16 9.41 22.57 0.21 0.05 16 20 C -0.14 -0.54 8.65 22.22 0.19 -0.34 16 21 C -0.08 -0.30 5.39 -19.79 -0.11 -0.41 16 22 C -0.08 0.12 2.79 71.24 0.20 0.32 16 23 O -0.56 0.55 12.81 -148.98 -1.91 -1.35 16 24 Si 0.77 -2.39 29.83 68.60 2.05 -0.34 16 25 C -0.10 -0.30 9.66 22.23 0.21 -0.09 16 26 C -0.10 -0.24 9.80 22.58 0.22 -0.02 16 27 C -0.11 0.51 5.21 30.61 0.16 0.67 16 28 C -0.10 0.15 4.50 30.61 0.14 0.29 16 29 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 31 H 0.07 -0.27 8.14 -2.38 -0.02 -0.29 16 32 H 0.07 0.14 8.13 -2.38 -0.02 0.12 16 33 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 34 H 0.08 -0.45 8.11 -2.39 -0.02 -0.47 16 35 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 36 H 0.07 -0.52 8.14 -2.39 -0.02 -0.54 16 37 H 0.08 -0.77 7.18 -2.39 -0.02 -0.79 16 38 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.42 -3.47 7.64 -92.71 -0.71 -4.18 16 41 H 0.16 -1.00 6.07 -2.91 -0.02 -1.02 16 42 H 0.13 0.58 7.52 -2.91 -0.02 0.56 16 43 H 0.15 -0.61 6.17 -2.91 -0.02 -0.63 16 44 H 0.12 0.32 4.84 -2.91 -0.01 0.31 16 45 H 0.09 -0.51 7.96 -2.39 -0.02 -0.53 16 46 H 0.40 -4.65 8.74 -74.05 -0.65 -5.29 16 47 H -0.29 -1.20 7.04 99.48 0.70 -0.50 16 48 H -0.29 -0.65 7.11 99.48 0.71 0.06 16 49 H 0.14 0.01 8.06 -2.91 -0.02 -0.01 16 50 H 0.15 -0.18 8.06 -2.91 -0.02 -0.20 16 51 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 52 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 53 H 0.06 0.06 8.10 -2.39 -0.02 0.04 16 54 H 0.06 0.04 8.10 -2.39 -0.02 0.02 16 Total: 0.00 -26.02 438.28 1.64 -24.38 By element: Atomic # 1 Polarization: -16.00 SS G_CDS: -0.41 Total: -16.42 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 4.63 Total: 10.65 kcal Atomic # 7 Polarization: 1.50 SS G_CDS: -2.47 Total: -0.97 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -2.15 Total: -17.30 kcal Atomic # 14 Polarization: -2.39 SS G_CDS: 2.05 Total: -0.34 kcal Total: -26.02 1.64 -24.38 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_12360594.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.255 kcal (2) G-P(sol) polarization free energy of solvation -26.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds