Wall clock time and date at job start Tue Mar 9 2021 13:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46884 * 2 1 4 4 C 1.34231 * 116.99983 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00142 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00053 * 180.02562 * 4 3 2 7 7 H 1.09008 * 109.47488 * 300.00148 * 6 4 3 8 8 C 1.53005 * 109.47337 * 60.00042 * 6 4 3 9 9 C 1.53000 * 109.47116 * 180.02562 * 8 6 4 10 10 C 1.52999 * 109.47278 * 300.00001 * 9 8 6 11 11 H 1.08998 * 109.47295 * 300.00333 * 10 9 8 12 12 C 1.53000 * 109.47278 * 179.97438 * 10 9 8 13 13 N 1.46500 * 109.47109 * 65.00069 * 12 10 9 14 14 C 1.34769 * 120.00052 * 179.97438 * 13 12 10 15 15 O 1.21583 * 120.00270 * 0.02562 * 14 13 12 16 16 C 1.47536 * 119.99732 * 179.97438 * 14 13 12 17 17 C 1.40139 * 120.19008 * 179.72271 * 16 14 13 18 18 O 1.35659 * 120.15198 * 0.02562 * 17 16 14 19 19 C 1.42896 * 117.00363 * 179.97438 * 18 17 16 20 20 C 1.38712 * 119.70353 * 179.76986 * 17 16 14 21 21 C 1.38054 * 120.07899 * 0.51024 * 20 17 16 22 22 C 1.38553 * 120.39071 * 359.74257 * 21 20 17 23 23 C 1.50710 * 119.84845 * 179.97438 * 22 21 20 24 24 O 1.42894 * 109.46908 * 245.01992 * 23 22 21 25 25 Si 1.86301 * 109.46820 * 5.02326 * 23 22 21 26 26 C 1.37781 * 120.30183 * 359.97438 * 22 21 20 27 27 C 1.53005 * 109.47048 * 59.99957 * 10 9 8 28 28 C 1.52999 * 109.47248 * 180.02562 * 6 4 3 29 29 H 1.08992 * 109.47399 * 59.99654 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99482 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00338 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00518 * 2 1 3 34 34 H 1.08998 * 109.46920 * 300.00089 * 8 6 4 35 35 H 1.08998 * 109.46765 * 60.00188 * 8 6 4 36 36 H 1.08992 * 109.47230 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.46992 * 59.99877 * 9 8 6 38 38 H 1.09003 * 109.47228 * 184.99852 * 12 10 9 39 39 H 1.08997 * 109.47165 * 305.00065 * 12 10 9 40 40 H 0.97006 * 119.99569 * 0.02562 * 13 12 10 41 41 H 1.08998 * 109.47027 * 299.99978 * 19 18 17 42 42 H 1.09002 * 109.47106 * 59.99789 * 19 18 17 43 43 H 1.08998 * 109.47053 * 179.97438 * 19 18 17 44 44 H 1.07992 * 119.96567 * 180.22975 * 20 17 16 45 45 H 1.07997 * 119.80573 * 179.71707 * 21 20 17 46 46 H 1.08993 * 109.46784 * 125.02022 * 23 22 21 47 47 H 0.96701 * 113.99978 * 60.00689 * 24 23 22 48 48 H 1.48497 * 110.00162 * 58.68169 * 25 23 22 49 49 H 1.48503 * 109.99318 * 179.97438 * 25 23 22 50 50 H 1.08007 * 120.04890 * 179.97438 * 26 22 21 51 51 H 1.08998 * 109.46920 * 180.02562 * 27 10 9 52 52 H 1.08998 * 109.46765 * 60.00052 * 27 10 9 53 53 H 1.08998 * 109.47295 * 300.00082 * 28 6 4 54 54 H 1.09004 * 109.47225 * 60.00231 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.5850 3.4700 -0.8888 8 6 3.4486 3.6841 1.2505 9 6 4.0329 5.0981 1.2507 10 6 5.5608 5.0187 1.2509 11 1 5.8969 4.4865 2.1408 12 6 6.1451 6.4327 1.2505 13 7 5.7920 7.1074 2.5021 14 6 6.2022 8.3716 2.7251 15 8 6.8649 8.9524 1.8875 16 6 5.8460 9.0511 3.9853 17 6 6.2753 10.3636 4.2240 18 8 7.0203 11.0161 3.2968 19 6 7.4210 12.3516 3.6093 20 6 5.9306 10.9946 5.4102 21 6 5.1769 10.3275 6.3551 22 6 4.7550 9.0279 6.1252 23 6 3.9332 8.3110 7.1654 24 8 4.6743 7.2012 7.6761 25 14 3.5326 9.4835 8.5566 26 6 5.0833 8.3881 4.9500 27 6 6.0328 4.2720 0.0016 28 6 5.4485 2.8575 0.0010 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 2.3601 3.7411 1.2501 35 1 3.7843 3.1517 2.1404 36 1 3.6970 5.6299 2.1409 37 1 3.6969 5.6302 0.3608 38 1 7.2300 6.3776 1.1611 39 1 5.7391 6.9934 0.4085 40 1 5.2635 6.6438 3.1705 41 1 6.5365 12.9699 3.7623 42 1 8.0228 12.3471 4.5182 43 1 8.0098 12.7563 2.7861 44 1 6.2560 12.0072 5.5969 45 1 4.9149 10.8213 7.2791 46 1 3.0079 7.9532 6.7140 47 1 5.5118 7.4459 8.0931 48 1 2.7894 10.6577 8.0332 49 1 2.7218 8.7886 9.5887 50 1 4.7526 7.3748 4.7752 51 1 7.1213 4.2151 0.0020 52 1 5.6968 4.8042 -0.8883 53 1 5.7846 2.3249 0.8907 54 1 5.7845 2.3258 -0.8893 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14654746_12496546.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:23 Heat of formation + Delta-G solvation = -176.172140 kcal Electronic energy + Delta-G solvation = -34997.983548 eV Core-core repulsion = 30287.266146 eV Total energy + Delta-G solvation = -4710.717401 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.197 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.88108 -41.71680 -40.33815 -39.33363 -39.16303 -37.73771 -37.08613 -35.90345 -33.42912 -32.70391 -32.00445 -31.79475 -31.65649 -28.58441 -27.66073 -26.13107 -25.29129 -24.39890 -23.76575 -23.26140 -22.42144 -21.62640 -21.41429 -20.71377 -19.51392 -18.74520 -18.35826 -18.09012 -17.68602 -17.58808 -17.24812 -16.89427 -16.59585 -16.33259 -16.15697 -15.81757 -15.78024 -15.74152 -15.27165 -15.03850 -14.89962 -14.66017 -14.59159 -14.51545 -14.41733 -13.89681 -13.73919 -13.61944 -13.56353 -13.35750 -13.25244 -13.08637 -12.99373 -12.89355 -12.57694 -12.41150 -12.25939 -12.12718 -12.12115 -12.00810 -11.88027 -11.78465 -11.59542 -11.46585 -11.23860 -11.12982 -10.96174 -10.36912 -10.28506 -10.01473 -9.27647 -4.96611 -0.24943 0.22871 1.09066 1.35415 1.62972 1.66982 1.79719 2.01589 2.13309 2.28654 2.70092 3.40904 3.50912 3.56286 3.60161 3.64855 3.70018 3.77210 3.86010 3.93968 3.97013 4.00762 4.02180 4.11845 4.19553 4.26554 4.30232 4.31815 4.37389 4.37484 4.41243 4.44681 4.49056 4.57426 4.65317 4.67849 4.72297 4.75726 4.81009 4.83362 4.86929 4.94652 4.95379 5.06932 5.09474 5.10750 5.12980 5.16132 5.20229 5.29030 5.31145 5.38719 5.43430 5.50586 5.57949 6.31481 6.52594 6.65103 6.82390 7.22696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.542 6.542 6 C -0.077 4.077 7 H 0.125 0.875 8 C -0.104 4.104 9 C -0.110 4.110 10 C -0.092 4.092 11 H 0.086 0.914 12 C 0.128 3.872 13 N -0.716 5.716 14 C 0.555 3.445 15 O -0.566 6.566 16 C -0.197 4.197 17 C 0.170 3.830 18 O -0.314 6.314 19 C 0.011 3.989 20 C -0.212 4.212 21 C -0.041 4.041 22 C -0.168 4.168 23 C -0.063 4.063 24 O -0.554 6.554 25 Si 0.768 3.232 26 C -0.017 4.017 27 C -0.106 4.106 28 C -0.099 4.099 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.410 0.590 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.107 0.893 44 H 0.163 0.837 45 H 0.159 0.841 46 H 0.113 0.887 47 H 0.395 0.605 48 H -0.284 1.284 49 H -0.303 1.303 50 H 0.149 0.851 51 H 0.076 0.924 52 H 0.077 0.923 53 H 0.064 0.936 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.181 3.083 4.882 6.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.308 3.692 5 O -0.432 6.432 6 C -0.095 4.095 7 H 0.143 0.857 8 C -0.142 4.142 9 C -0.147 4.147 10 C -0.111 4.111 11 H 0.104 0.896 12 C 0.005 3.995 13 N -0.369 5.369 14 C 0.343 3.657 15 O -0.446 6.446 16 C -0.201 4.201 17 C 0.122 3.878 18 O -0.225 6.225 19 C -0.083 4.083 20 C -0.231 4.231 21 C -0.059 4.059 22 C -0.169 4.169 23 C -0.174 4.174 24 O -0.362 6.362 25 Si 0.675 3.325 26 C -0.036 4.036 27 C -0.144 4.144 28 C -0.137 4.137 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.248 0.752 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.125 0.875 44 H 0.180 0.820 45 H 0.176 0.824 46 H 0.130 0.870 47 H 0.245 0.755 48 H -0.211 1.211 49 H -0.231 1.231 50 H 0.167 0.833 51 H 0.094 0.906 52 H 0.096 0.904 53 H 0.082 0.918 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.571 3.178 4.279 5.918 hybrid contribution -0.259 -0.682 -0.415 0.839 sum -2.830 2.496 3.864 5.401 Atomic orbital electron populations 1.21820 0.90658 1.04238 1.03751 1.23234 0.96939 0.79496 1.02346 1.86519 1.24365 1.33317 1.83493 1.24409 0.80491 0.93420 0.70925 1.90665 1.61144 1.44547 1.46829 1.21264 0.96632 0.88145 1.03507 0.85692 1.21491 1.01738 0.95734 0.95208 1.21599 0.93733 0.95718 1.03651 1.21390 0.96071 0.93519 1.00097 0.89572 1.21383 0.99800 0.92576 0.85769 1.45827 1.55946 1.13733 1.21417 1.18290 0.79180 0.81847 0.86347 1.90811 1.40202 1.66211 1.47372 1.19432 1.08964 0.94264 0.97469 1.19428 0.88973 0.90849 0.88551 1.86338 1.64917 1.29541 1.41739 1.23448 1.01096 0.79750 1.04019 1.21482 1.05058 1.02902 0.93627 1.21275 0.92945 0.93125 0.98535 1.20252 1.03822 0.95594 0.97196 1.25040 0.96276 0.95386 1.00652 1.86476 1.38722 1.32345 1.78665 0.93875 0.86482 0.75512 0.76627 1.21099 0.92335 0.99340 0.90788 1.21482 1.01150 0.93951 0.97815 1.21389 0.91538 0.97656 1.03068 0.91267 0.88624 0.91171 0.91512 0.91604 0.89859 0.91401 0.90309 0.90705 0.92301 0.91956 0.75178 0.90976 0.90648 0.87496 0.81974 0.82383 0.86972 0.75453 1.21115 1.23087 0.83308 0.90579 0.90419 0.91771 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.46 10.29 71.98 0.74 1.20 16 2 C 0.05 0.09 6.19 71.98 0.45 0.54 16 3 O -0.36 -1.44 10.12 -51.42 -0.52 -1.96 16 4 C 0.46 2.36 7.26 71.24 0.52 2.88 16 5 O -0.54 -6.36 15.73 21.98 0.35 -6.01 16 6 C -0.08 0.11 2.63 -11.54 -0.03 0.08 16 7 H 0.13 -0.54 8.14 -2.38 -0.02 -0.56 16 8 C -0.10 0.45 5.14 30.60 0.16 0.61 16 9 C -0.11 0.66 5.08 30.59 0.16 0.82 16 10 C -0.09 0.43 2.23 -10.79 -0.02 0.40 16 11 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 12 C 0.13 0.01 5.06 86.38 0.44 0.45 16 13 N -0.72 -0.62 5.23 -466.29 -2.44 -3.06 16 14 C 0.55 4.70 7.76 86.70 0.67 5.37 16 15 O -0.57 -9.85 15.16 16.94 0.26 -9.59 16 16 C -0.20 -0.94 5.89 -20.01 -0.12 -1.06 16 17 C 0.17 0.84 6.70 22.85 0.15 0.99 16 18 O -0.31 -2.60 8.57 -68.83 -0.59 -3.19 16 19 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 20 C -0.21 0.42 9.03 22.34 0.20 0.63 16 21 C -0.04 0.20 8.65 22.30 0.19 0.39 16 22 C -0.17 0.57 5.35 -19.89 -0.11 0.47 16 23 C -0.06 0.30 2.79 71.24 0.20 0.50 16 24 O -0.55 2.20 12.83 -148.98 -1.91 0.29 16 25 Si 0.77 -4.23 29.79 68.60 2.04 -2.19 16 26 C -0.02 0.02 9.16 22.52 0.21 0.23 16 27 C -0.11 0.41 5.20 30.61 0.16 0.57 16 28 C -0.10 0.09 4.50 30.61 0.14 0.23 16 29 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 31 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.07 0.15 8.13 -2.39 -0.02 0.13 16 33 H 0.07 0.16 8.13 -2.39 -0.02 0.14 16 34 H 0.08 -0.38 8.11 -2.39 -0.02 -0.40 16 35 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 36 H 0.08 -0.59 7.18 -2.39 -0.02 -0.61 16 37 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 38 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.41 -1.91 5.68 -92.70 -0.53 -2.44 16 41 H 0.07 -0.36 7.65 -2.39 -0.02 -0.38 16 42 H 0.07 -0.41 7.67 -2.39 -0.02 -0.43 16 43 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 44 H 0.16 -1.16 6.30 -2.91 -0.02 -1.18 16 45 H 0.16 -1.63 4.88 -2.91 -0.01 -1.64 16 46 H 0.11 -0.48 7.96 -2.39 -0.02 -0.50 16 47 H 0.40 -4.51 8.70 -74.06 -0.64 -5.16 16 48 H -0.28 0.23 7.11 99.48 0.71 0.93 16 49 H -0.30 -0.87 7.11 99.48 0.71 -0.17 16 50 H 0.15 -0.79 6.40 -2.91 -0.02 -0.81 16 51 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 52 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 53 H 0.06 0.09 8.10 -2.39 -0.02 0.07 16 54 H 0.07 0.09 8.10 -2.38 -0.02 0.07 16 Total: 0.00 -27.41 431.07 2.18 -25.23 By element: Atomic # 1 Polarization: -15.68 SS G_CDS: -0.21 Total: -15.89 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 5.21 Total: 16.38 kcal Atomic # 7 Polarization: -0.62 SS G_CDS: -2.44 Total: -3.06 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -2.42 Total: -20.46 kcal Atomic # 14 Polarization: -4.23 SS G_CDS: 2.04 Total: -2.19 kcal Total: -27.41 2.18 -25.23 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14654746_12496546.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.945 kcal (2) G-P(sol) polarization free energy of solvation -27.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds