Wall clock time and date at job start Tue Mar 9 2021 13:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86303 * 109.47358 * 2 1 4 4 C 1.50703 * 109.46819 * 239.99623 * 2 1 3 5 5 C 1.38237 * 119.94609 * 299.99999 * 4 2 1 6 6 C 1.38173 * 120.05509 * 179.97438 * 5 4 2 7 7 N 1.47996 * 120.02670 * 179.97438 * 6 5 4 8 8 O 1.21799 * 120.00437 * 0.02657 * 7 6 5 9 9 O 1.21804 * 120.00118 * 180.02562 * 7 6 5 10 10 C 1.38707 * 119.94109 * 0.03047 * 6 5 4 11 11 O 1.35906 * 120.05424 * 179.97438 * 10 6 5 12 12 C 1.42893 * 117.00267 * 179.97438 * 11 10 6 13 13 C 1.50695 * 109.47603 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99781 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00323 * 180.02562 * 13 12 11 16 16 C 1.46501 * 119.99998 * 179.97438 * 15 13 12 17 17 H 1.09005 * 112.85067 * 23.80535 * 16 15 13 18 18 C 1.53781 * 113.61611 * 154.99655 * 16 15 13 19 19 C 1.53781 * 87.08107 * 139.98383 * 18 16 15 20 20 H 1.08995 * 113.61369 * 89.20374 * 19 18 16 21 21 C 1.53006 * 113.61256 * 220.02188 * 19 18 16 22 22 N 1.46500 * 109.46998 * 185.00048 * 21 19 18 23 23 C 1.34940 * 126.04003 * 124.71583 * 22 21 19 24 24 C 1.35320 * 107.74879 * 179.84078 * 23 22 21 25 25 C 1.39863 * 107.91673 * 0.42445 * 24 23 22 26 26 N 1.30838 * 108.20413 * 359.73663 * 25 24 23 27 27 C 1.53783 * 87.08349 * 334.56836 * 19 18 16 28 28 C 1.38749 * 119.89451 * 0.24664 * 10 6 5 29 29 C 1.38130 * 119.94007 * 359.47301 * 28 10 6 30 30 H 0.96703 * 113.99699 * 59.99898 * 1 2 3 31 31 H 1.09000 * 109.46481 * 120.00331 * 2 1 3 32 32 H 1.48496 * 109.99821 * 60.00018 * 3 2 1 33 33 H 1.48494 * 109.99813 * 181.32031 * 3 2 1 34 34 H 1.08002 * 119.97281 * 0.03151 * 5 4 2 35 35 H 1.09002 * 109.47012 * 59.99750 * 12 11 10 36 36 H 1.08998 * 109.47176 * 300.00464 * 12 11 10 37 37 H 0.97001 * 119.99879 * 359.97438 * 15 13 12 38 38 H 1.09007 * 113.61246 * 25.43436 * 18 16 15 39 39 H 1.09000 * 113.61825 * 254.53710 * 18 16 15 40 40 H 1.08993 * 109.46955 * 305.00273 * 21 19 18 41 41 H 1.09000 * 109.47050 * 65.00102 * 21 19 18 42 42 H 1.08005 * 126.12627 * 359.97438 * 23 22 21 43 43 H 1.08002 * 126.03873 * 180.16348 * 24 23 22 44 44 H 1.08004 * 125.89980 * 179.76221 * 25 24 23 45 45 H 1.08996 * 113.61199 * 139.97325 * 27 19 18 46 46 H 1.08996 * 113.61879 * 270.88830 * 27 19 18 47 47 H 1.07995 * 120.03307 * 179.73211 * 28 10 6 48 48 H 1.07997 * 119.97135 * 180.27019 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9312 -0.7105 -1.2305 5 6 1.5966 -2.0340 -1.4480 6 6 2.0554 -2.6875 -2.5757 7 7 1.6972 -4.1046 -2.8077 8 8 0.9972 -4.6952 -2.0047 9 8 2.1023 -4.6803 -3.8017 10 6 2.8530 -2.0145 -3.4894 11 8 3.3060 -2.6552 -4.5991 12 6 4.1220 -1.8999 -5.4966 13 6 4.5264 -2.7685 -6.6597 14 8 4.1530 -3.9211 -6.7145 15 7 5.3039 -2.2649 -7.6386 16 6 5.6976 -3.1095 -8.7691 17 1 5.0106 -3.9390 -8.9370 18 6 6.0294 -2.3167 -10.0443 19 6 7.1905 -3.3016 -10.2601 20 1 6.9132 -4.1838 -10.8371 21 6 8.4713 -2.6371 -10.7691 22 7 9.4744 -3.6657 -11.0557 23 6 10.1163 -3.8435 -12.2292 24 6 10.9603 -4.8910 -12.0832 25 6 10.8226 -5.3759 -10.7785 26 7 9.9321 -4.6422 -10.1616 27 6 7.1769 -3.5287 -8.7392 28 6 3.1922 -0.6878 -3.2659 29 6 2.7262 -0.0373 -2.1400 30 1 -0.3933 0.4417 -0.7651 31 1 1.7922 -0.5139 0.8900 32 1 1.5616 2.4678 1.2085 33 1 3.5346 1.7702 -0.0322 34 1 0.9752 -2.5574 -0.7364 35 1 5.0136 -1.5542 -4.9735 36 1 3.5600 -1.0409 -5.8632 37 1 5.6029 -1.3431 -7.5947 38 1 6.3542 -1.2943 -9.8507 39 1 5.2564 -2.3783 -10.8103 40 1 8.2536 -2.0782 -11.6791 41 1 8.8550 -1.9574 -10.0083 42 1 9.9821 -3.2538 -13.1241 43 1 11.6203 -5.2858 -12.8415 44 1 11.3590 -6.2114 -10.3535 45 1 7.3301 -4.5689 -8.4517 46 1 7.8154 -2.8378 -8.1887 47 1 3.8167 -0.1630 -3.9737 48 1 2.9864 0.9966 -1.9678 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688084_4549638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:23:27 Heat of formation + Delta-G solvation = 41.414808 kcal Electronic energy + Delta-G solvation = -34701.998600 eV Core-core repulsion = 29730.835561 eV Total energy + Delta-G solvation = -4971.163040 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.151 amu Computer time = 7.41 seconds Orbital eigenvalues (eV) -43.30955 -42.05327 -41.79426 -41.05704 -39.88075 -39.07484 -37.60955 -37.37072 -35.22116 -33.66603 -33.42212 -32.24693 -30.97308 -30.08084 -28.27899 -27.83923 -26.70964 -26.56734 -24.58407 -23.71593 -22.81506 -21.93616 -21.85447 -21.47587 -20.70687 -20.51060 -19.78973 -19.19271 -18.65505 -18.47047 -18.19669 -18.09475 -17.58565 -17.34643 -16.94422 -16.47837 -16.33795 -16.14452 -15.79992 -15.68381 -15.56439 -15.25614 -14.97665 -14.83534 -14.72567 -14.07650 -14.04744 -13.86547 -13.73396 -13.53498 -13.46498 -13.41296 -13.24040 -12.95161 -12.72652 -12.37966 -12.29478 -12.29062 -12.21862 -12.18760 -11.94642 -11.84470 -11.61338 -11.35872 -10.99453 -10.84677 -10.56999 -10.32589 -10.12292 -9.79819 -9.47408 -4.99947 -1.33182 -0.25205 0.14118 0.34182 1.02032 1.21436 1.27158 1.43188 1.64007 1.70923 1.96578 2.01889 2.04803 2.33890 3.11048 3.23887 3.35247 3.38403 3.45544 3.50352 3.59279 3.70416 3.70966 3.76091 3.78894 3.91647 3.99091 4.02894 4.10259 4.23065 4.28254 4.33194 4.35091 4.40209 4.50316 4.62390 4.71083 4.72709 4.78871 4.83107 4.83190 4.93359 4.99498 5.06372 5.06749 5.16687 5.17964 5.18652 5.52205 5.75441 5.76443 6.22132 6.39541 6.46089 6.73047 6.80541 7.16622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.083 4.083 3 Si 0.801 3.199 4 C -0.150 4.150 5 C -0.004 4.004 6 C -0.105 4.105 7 N 0.034 4.966 8 O -0.203 6.203 9 O -0.176 6.176 10 C 0.193 3.807 11 O -0.293 6.293 12 C 0.025 3.975 13 C 0.505 3.495 14 O -0.570 6.570 15 N -0.695 5.695 16 C 0.116 3.884 17 H 0.083 0.917 18 C -0.109 4.109 19 C -0.115 4.115 20 H 0.077 0.923 21 C 0.139 3.861 22 N -0.376 5.376 23 C 0.053 3.947 24 C -0.294 4.294 25 C 0.024 3.976 26 N -0.332 5.332 27 C -0.135 4.135 28 C -0.187 4.187 29 C -0.004 4.004 30 H 0.398 0.602 31 H 0.109 0.891 32 H -0.306 1.306 33 H -0.263 1.263 34 H 0.149 0.851 35 H 0.143 0.857 36 H 0.150 0.850 37 H 0.425 0.575 38 H 0.127 0.873 39 H 0.088 0.912 40 H 0.132 0.868 41 H 0.097 0.903 42 H 0.208 0.792 43 H 0.159 0.841 44 H 0.191 0.809 45 H 0.038 0.962 46 H 0.097 0.903 47 H 0.208 0.792 48 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.651 18.320 -6.575 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.191 4.191 3 Si 0.705 3.295 4 C -0.151 4.151 5 C -0.023 4.023 6 C -0.191 4.191 7 N 0.544 4.456 8 O -0.410 6.410 9 O -0.390 6.390 10 C 0.143 3.857 11 O -0.204 6.204 12 C -0.052 4.052 13 C 0.291 3.709 14 O -0.448 6.448 15 N -0.349 5.349 16 C 0.011 3.989 17 H 0.101 0.899 18 C -0.148 4.148 19 C -0.134 4.134 20 H 0.096 0.904 21 C 0.019 3.981 22 N -0.159 5.159 23 C -0.093 4.093 24 C -0.324 4.324 25 C -0.162 4.162 26 N -0.154 5.154 27 C -0.174 4.174 28 C -0.206 4.206 29 C -0.022 4.022 30 H 0.248 0.752 31 H 0.126 0.874 32 H -0.234 1.234 33 H -0.190 1.190 34 H 0.167 0.833 35 H 0.160 0.840 36 H 0.167 0.833 37 H 0.264 0.736 38 H 0.145 0.855 39 H 0.107 0.893 40 H 0.150 0.850 41 H 0.115 0.885 42 H 0.225 0.775 43 H 0.176 0.824 44 H 0.208 0.792 45 H 0.057 0.943 46 H 0.116 0.884 47 H 0.225 0.775 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 4.323 18.501 -4.494 19.524 hybrid contribution 0.386 -2.111 -0.276 2.164 sum 4.709 16.390 -4.770 17.708 Atomic orbital electron populations 1.86531 1.17251 1.82226 1.50629 1.25503 0.85489 1.12166 0.95980 0.93801 0.77901 0.72405 0.85413 1.20466 1.02126 0.92628 0.99922 1.20835 0.94222 0.94831 0.92434 1.20880 1.13566 0.81436 1.03194 1.43922 0.98191 1.04058 0.99432 1.94500 1.36040 1.68391 1.42102 1.94685 1.56425 1.69430 1.18413 1.18988 0.89595 0.92134 0.84936 1.86478 1.63659 1.39863 1.30356 1.23149 0.98180 0.94550 0.89312 1.20635 0.78382 0.87666 0.84180 1.90854 1.55444 1.20439 1.78062 1.45586 1.51159 1.16593 1.21549 1.22460 0.95087 0.94923 0.86438 0.89854 1.23299 0.96620 0.99487 0.95350 1.22507 0.95076 0.99735 0.96122 0.90411 1.22054 0.84511 0.86897 1.04619 1.49019 1.32774 1.25453 1.08646 1.23207 0.94858 0.99457 0.91797 1.21860 1.08807 1.02863 0.98834 1.24297 0.97034 1.00136 0.94686 1.77325 1.16745 1.03449 1.17907 1.23432 0.96293 1.01287 0.96368 1.21827 1.05928 0.90411 1.02414 1.21739 0.89388 1.01218 0.89818 0.75179 0.87369 1.23430 1.18954 0.83326 0.83978 0.83284 0.73584 0.85517 0.89314 0.84985 0.88515 0.77495 0.82369 0.79231 0.94332 0.88409 0.77511 0.79320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.98 12.77 -148.98 -1.90 0.08 16 2 C -0.08 0.52 2.82 71.24 0.20 0.72 16 3 Si 0.80 -8.44 29.78 68.60 2.04 -6.40 16 4 C -0.15 0.86 5.39 -19.85 -0.11 0.76 16 5 C 0.00 -0.01 9.11 22.25 0.20 0.19 16 6 C -0.11 -0.78 6.87 36.48 0.25 -0.53 16 7 N 0.03 0.60 4.45 -46.25 -0.21 0.40 16 8 O -0.20 -3.96 18.45 18.89 0.35 -3.61 16 9 O -0.18 -4.01 17.24 25.60 0.44 -3.56 16 10 C 0.19 0.11 6.67 22.50 0.15 0.26 16 11 O -0.29 -1.38 7.68 -63.47 -0.49 -1.87 16 12 C 0.02 -0.19 5.22 71.23 0.37 0.18 16 13 C 0.51 0.63 7.91 87.66 0.69 1.33 16 14 O -0.57 -9.22 16.10 16.00 0.26 -8.96 16 15 N -0.69 4.83 5.35 -440.03 -2.36 2.48 16 16 C 0.12 -0.33 4.24 45.52 0.19 -0.14 16 17 H 0.08 0.41 7.46 -2.38 -0.02 0.39 16 18 C -0.11 1.16 7.39 31.12 0.23 1.39 16 19 C -0.11 0.58 3.83 -10.26 -0.04 0.55 16 20 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 21 C 0.14 -1.02 6.35 86.38 0.55 -0.47 16 22 N -0.38 -0.29 3.68 -348.06 -1.28 -1.57 16 23 C 0.05 -0.08 11.45 83.54 0.96 0.87 16 24 C -0.29 -0.48 10.80 21.99 0.24 -0.24 16 25 C 0.02 0.12 12.02 85.23 1.02 1.15 16 26 N -0.33 -2.49 12.42 -57.02 -0.71 -3.20 16 27 C -0.13 0.14 7.43 31.12 0.23 0.37 16 28 C -0.19 2.12 9.04 22.37 0.20 2.32 16 29 C 0.00 0.05 8.66 22.26 0.19 0.25 16 30 H 0.40 -4.91 8.70 -74.06 -0.64 -5.56 16 31 H 0.11 -0.44 7.96 -2.39 -0.02 -0.46 16 32 H -0.31 0.20 7.11 99.48 0.71 0.91 16 33 H -0.26 2.26 7.11 99.48 0.71 2.97 16 34 H 0.15 0.65 7.61 -2.91 -0.02 0.63 16 35 H 0.14 -2.30 7.65 -2.39 -0.02 -2.32 16 36 H 0.15 -2.60 7.67 -2.39 -0.02 -2.62 16 37 H 0.43 -7.15 8.73 -92.71 -0.81 -7.96 16 38 H 0.13 -2.18 8.08 -2.38 -0.02 -2.20 16 39 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 40 H 0.13 -1.85 8.07 -2.39 -0.02 -1.87 16 41 H 0.10 -0.89 7.84 -2.39 -0.02 -0.91 16 42 H 0.21 -2.06 8.06 -2.91 -0.02 -2.08 16 43 H 0.16 -0.31 8.06 -2.91 -0.02 -0.34 16 44 H 0.19 0.18 8.06 -2.91 -0.02 0.16 16 45 H 0.04 0.28 8.14 -2.39 -0.02 0.26 16 46 H 0.10 -0.35 7.90 -2.39 -0.02 -0.37 16 47 H 0.21 -4.51 6.30 -2.91 -0.02 -4.53 16 48 H 0.19 -3.79 4.87 -2.91 -0.01 -3.81 16 Total: 0.00 -49.29 414.79 1.32 -47.97 By element: Atomic # 1 Polarization: -30.32 SS G_CDS: -0.37 Total: -30.70 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 5.54 Total: 8.95 kcal Atomic # 7 Polarization: 2.65 SS G_CDS: -4.55 Total: -1.90 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -1.34 Total: -17.93 kcal Atomic # 14 Polarization: -8.44 SS G_CDS: 2.04 Total: -6.40 kcal Total: -49.29 1.32 -47.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688084_4549638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.387 kcal (2) G-P(sol) polarization free energy of solvation -49.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.41 seconds