Wall clock time and date at job start Tue Mar 9 2021 13:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50699 * 109.46830 * 240.00466 * 2 1 3 5 5 C 1.35451 * 126.06869 * 120.02098 * 4 2 1 6 6 N 1.35532 * 108.87645 * 179.97438 * 5 4 2 7 7 C 1.37653 * 108.64239 * 0.02562 * 6 5 4 8 8 C 1.46675 * 126.23692 * 180.02562 * 7 6 5 9 9 O 1.21690 * 120.00349 * 180.02562 * 8 7 6 10 10 N 1.34781 * 120.00065 * 0.02562 * 8 7 6 11 11 C 1.46498 * 120.00459 * 179.97438 * 10 8 7 12 12 H 1.08998 * 112.84715 * 25.33485 * 11 10 8 13 13 C 1.53775 * 113.61477 * 156.52732 * 11 10 8 14 14 C 1.53785 * 87.07993 * 89.11682 * 13 11 10 15 15 H 1.08996 * 113.61702 * 270.80034 * 14 13 11 16 16 C 1.53007 * 113.61259 * 139.97894 * 14 13 11 17 17 N 1.46504 * 109.46737 * 175.00336 * 16 14 13 18 18 C 1.34944 * 126.03442 * 124.71867 * 17 16 14 19 19 C 1.35315 * 107.74449 * 179.83359 * 18 17 16 20 20 C 1.39871 * 107.91849 * 0.42620 * 19 18 17 21 21 N 1.30833 * 108.20329 * 359.73592 * 20 19 18 22 22 C 1.53775 * 113.61286 * 254.13837 * 11 10 8 23 23 C 1.37873 * 107.53038 * 359.75596 * 7 6 5 24 24 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 25 25 H 1.08991 * 109.47274 * 120.00272 * 2 1 3 26 26 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 27 27 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 28 28 H 1.08008 * 125.56459 * 359.94537 * 5 4 2 29 29 H 0.96999 * 125.68764 * 179.97438 * 6 5 4 30 30 H 0.97007 * 119.99732 * 0.02562 * 10 8 7 31 31 H 1.08998 * 113.61555 * 203.66232 * 13 11 10 32 32 H 1.09003 * 113.61803 * 334.48896 * 13 11 10 33 33 H 1.08997 * 109.46737 * 295.00092 * 16 14 13 34 34 H 1.08998 * 109.46929 * 55.00249 * 16 14 13 35 35 H 1.08002 * 126.13235 * 359.97438 * 18 17 16 36 36 H 1.08004 * 126.04157 * 180.15773 * 19 18 17 37 37 H 1.08004 * 125.89777 * 179.71650 * 20 19 18 38 38 H 1.08999 * 113.61968 * 25.43022 * 22 11 10 39 39 H 1.09011 * 113.61161 * 156.33389 * 22 11 10 40 40 H 1.08002 * 126.45818 * 180.24013 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7135 -0.1739 -2.1975 6 7 2.9565 -1.1182 -3.1389 7 6 2.3189 -2.2811 -2.7705 8 6 2.3264 -3.5465 -3.5123 9 8 1.7199 -4.5089 -3.0800 10 7 3.0051 -3.6434 -4.6727 11 6 3.0132 -4.9073 -5.4134 12 1 2.1398 -5.5254 -5.2052 13 6 3.3061 -4.7402 -6.9137 14 6 4.7959 -4.8777 -6.5578 15 1 5.2776 -3.9291 -6.3211 16 6 5.5913 -5.7137 -7.5626 17 7 7.0116 -5.6867 -7.2041 18 6 7.7952 -6.7630 -6.9835 19 6 9.0361 -6.3150 -6.6830 20 6 9.0075 -4.9168 -6.7116 21 7 7.7944 -4.5392 -7.0239 22 6 4.3450 -5.6698 -5.3159 23 6 1.6768 -2.0417 -1.5742 24 1 -0.3934 0.4418 -0.7650 25 1 1.7923 -0.5138 0.8899 26 1 1.5616 2.4678 1.2086 27 1 3.5346 1.7703 -0.0322 28 1 3.0829 0.8409 -2.2157 29 1 3.4903 -0.9949 -3.9394 30 1 3.4889 -2.8763 -5.0171 31 1 2.9263 -5.5578 -7.5264 32 1 3.0380 -3.7586 -7.3043 33 1 5.2315 -6.7424 -7.5448 34 1 5.4611 -5.3004 -8.5628 35 1 7.4877 -7.7968 -7.0393 36 1 9.8957 -6.9284 -6.4564 37 1 9.8426 -4.2621 -6.5104 38 1 4.9163 -5.4378 -4.4171 39 1 4.2486 -6.7412 -5.4926 40 1 1.0867 -2.7485 -1.0098 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_10543058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:25:23 Heat of formation + Delta-G solvation = 88.058698 kcal Electronic energy + Delta-G solvation = -23710.467703 eV Core-core repulsion = 20109.363770 eV Total energy + Delta-G solvation = -3601.103933 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.54738 -42.06302 -41.01414 -39.31807 -37.65165 -35.20702 -33.60362 -32.46827 -31.04335 -30.73087 -28.59045 -26.79604 -26.56149 -24.87453 -23.68376 -22.02034 -21.65394 -21.34150 -20.86867 -20.29292 -19.91226 -18.22021 -17.52151 -17.36380 -16.81651 -16.63582 -16.31730 -15.92384 -15.84508 -15.54747 -15.36190 -14.89921 -14.78911 -14.52063 -14.39288 -14.28660 -13.95317 -13.86103 -13.57487 -13.50939 -13.46778 -12.81145 -12.28588 -12.26943 -11.98279 -11.72042 -11.60285 -11.41574 -11.36330 -10.38953 -10.37044 -10.27763 -9.96654 -9.48696 -9.32489 -4.93576 0.30337 0.98941 1.38667 1.51095 1.65615 1.71695 1.86308 1.93855 2.07615 2.08821 2.19196 3.34388 3.46168 3.49336 3.65105 3.71070 3.77661 3.94332 3.95550 4.07427 4.13169 4.18628 4.34611 4.38304 4.49646 4.60191 4.64273 4.66888 4.70978 4.75519 4.85729 4.89551 4.92706 4.98485 5.01557 5.09004 5.14871 5.44912 5.55287 5.69544 5.74311 6.16953 6.27795 6.45989 6.76541 6.89311 6.98156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.053 4.053 3 Si 0.802 3.198 4 C -0.226 4.226 5 C 0.060 3.940 6 N -0.516 5.516 7 C -0.072 4.072 8 C 0.590 3.410 9 O -0.574 6.574 10 N -0.699 5.699 11 C 0.112 3.888 12 H 0.091 0.909 13 C -0.116 4.116 14 C -0.113 4.113 15 H 0.089 0.911 16 C 0.135 3.865 17 N -0.374 5.374 18 C 0.052 3.948 19 C -0.295 4.295 20 C 0.029 3.971 21 N -0.333 5.333 22 C -0.145 4.145 23 C -0.103 4.103 24 H 0.393 0.607 25 H 0.091 0.909 26 H -0.309 1.309 27 H -0.273 1.273 28 H 0.216 0.784 29 H 0.436 0.564 30 H 0.409 0.591 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.094 0.906 35 H 0.203 0.797 36 H 0.158 0.842 37 H 0.196 0.804 38 H 0.046 0.954 39 H 0.106 0.894 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.288 2.885 -7.616 8.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.162 4.162 3 Si 0.707 3.293 4 C -0.233 4.233 5 C -0.078 4.078 6 N -0.113 5.113 7 C -0.185 4.185 8 C 0.379 3.621 9 O -0.453 6.453 10 N -0.350 5.350 11 C 0.006 3.994 12 H 0.109 0.891 13 C -0.155 4.155 14 C -0.132 4.132 15 H 0.107 0.893 16 C 0.015 3.985 17 N -0.156 5.156 18 C -0.095 4.095 19 C -0.324 4.324 20 C -0.157 4.157 21 N -0.155 5.155 22 C -0.183 4.183 23 C -0.130 4.130 24 H 0.243 0.757 25 H 0.109 0.891 26 H -0.237 1.237 27 H -0.200 1.200 28 H 0.232 0.768 29 H 0.277 0.723 30 H 0.246 0.754 31 H 0.140 0.860 32 H 0.108 0.892 33 H 0.142 0.858 34 H 0.113 0.887 35 H 0.220 0.780 36 H 0.176 0.824 37 H 0.212 0.788 38 H 0.065 0.935 39 H 0.124 0.876 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.585 3.400 -6.812 7.777 hybrid contribution 1.123 -1.246 0.392 1.722 sum 2.708 2.154 -6.420 7.293 Atomic orbital electron populations 1.86454 1.18157 1.82383 1.50300 1.24742 0.84557 1.11248 0.95621 0.93883 0.77279 0.73275 0.84897 1.19963 1.07673 0.95054 1.00588 1.22397 1.00370 0.95979 0.89062 1.41874 1.39694 1.08454 1.21321 1.20108 1.09690 0.88156 1.00521 1.17255 0.78191 0.86100 0.80510 1.90843 1.46149 1.39207 1.69119 1.45417 1.52238 1.14955 1.22399 1.21910 0.98790 0.85370 0.93285 0.89097 1.23296 0.93108 1.05264 0.93810 1.22863 0.95591 0.99433 0.95285 0.89304 1.22073 0.73725 1.03538 0.99177 1.48964 1.10098 1.03496 1.53080 1.23151 0.91604 0.94985 0.99769 1.21862 0.99342 0.94956 1.16286 1.24300 0.95621 0.96378 0.99352 1.77213 1.04395 1.09321 1.24613 1.23579 0.96232 1.00703 0.97829 1.21221 1.00282 0.96736 0.94781 0.75682 0.89136 1.23739 1.19976 0.76792 0.72299 0.75441 0.85976 0.89180 0.85765 0.88741 0.78039 0.82427 0.78751 0.93516 0.87578 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.87 12.88 -148.98 -1.92 -3.79 16 2 C -0.05 -0.06 3.02 71.24 0.22 0.15 16 3 Si 0.80 -3.27 30.59 68.60 2.10 -1.17 16 4 C -0.23 -0.28 5.44 -20.12 -0.11 -0.39 16 5 C 0.06 -0.33 10.45 83.48 0.87 0.54 16 6 N -0.52 2.74 5.99 -183.62 -1.10 1.64 16 7 C -0.07 -0.27 7.06 40.35 0.28 0.02 16 8 C 0.59 3.99 7.79 86.45 0.67 4.66 16 9 O -0.57 -9.31 16.50 -4.32 -0.07 -9.38 16 10 N -0.70 0.90 5.26 -444.02 -2.34 -1.44 16 11 C 0.11 -0.24 4.30 45.51 0.20 -0.04 16 12 H 0.09 0.19 7.50 -2.39 -0.02 0.17 16 13 C -0.12 1.01 7.38 31.12 0.23 1.24 16 14 C -0.11 0.65 3.76 -10.17 -0.04 0.61 16 15 H 0.09 -0.21 7.96 -2.39 -0.02 -0.23 16 16 C 0.13 -0.83 6.35 86.38 0.55 -0.28 16 17 N -0.37 -0.27 3.68 -348.05 -1.28 -1.55 16 18 C 0.05 -0.05 11.45 83.54 0.96 0.91 16 19 C -0.30 -0.41 10.80 21.99 0.24 -0.17 16 20 C 0.03 0.10 12.03 85.24 1.02 1.13 16 21 N -0.33 -1.93 12.27 -57.02 -0.70 -2.63 16 22 C -0.14 0.38 7.45 31.21 0.23 0.61 16 23 C -0.10 -0.75 10.59 22.57 0.24 -0.51 16 24 H 0.39 -2.15 8.70 -74.05 -0.64 -2.79 16 25 H 0.09 0.39 7.96 -2.39 -0.02 0.37 16 26 H -0.31 -1.52 7.11 99.48 0.71 -0.81 16 27 H -0.27 0.36 7.11 99.48 0.71 1.06 16 28 H 0.22 -2.92 6.19 -2.91 -0.02 -2.94 16 29 H 0.44 -5.49 8.19 -92.71 -0.76 -6.25 16 30 H 0.41 -3.05 7.83 -92.70 -0.73 -3.77 16 31 H 0.12 -1.47 8.10 -2.39 -0.02 -1.49 16 32 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 33 H 0.12 -1.42 7.78 -2.39 -0.02 -1.44 16 34 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 35 H 0.20 -1.67 8.06 -2.91 -0.02 -1.70 16 36 H 0.16 -0.32 8.06 -2.91 -0.02 -0.34 16 37 H 0.20 -0.27 8.06 -2.91 -0.02 -0.30 16 38 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.11 -0.54 7.90 -2.38 -0.02 -0.56 16 40 H 0.12 1.44 8.06 -2.91 -0.02 1.42 16 Total: 0.00 -30.20 343.99 -0.74 -30.95 By element: Atomic # 1 Polarization: -20.10 SS G_CDS: -1.00 Total: -21.10 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 5.56 Total: 8.47 kcal Atomic # 7 Polarization: 1.44 SS G_CDS: -5.42 Total: -3.98 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -1.99 Total: -13.17 kcal Atomic # 14 Polarization: -3.27 SS G_CDS: 2.10 Total: -1.17 kcal Total: -30.20 -0.74 -30.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_10543058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.005 kcal (2) G-P(sol) polarization free energy of solvation -30.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds