Wall clock time and date at job start Tue Mar 9 2021 13:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86304 * 109.47188 * 2 1 4 4 C 1.50698 * 109.46806 * 120.00048 * 2 1 3 5 5 C 1.35455 * 125.56086 * 245.01984 * 4 2 1 6 6 C 1.39841 * 107.86208 * 179.72226 * 5 4 2 7 7 C 1.37874 * 107.08262 * 0.42050 * 6 5 4 8 8 C 1.46679 * 126.22610 * 179.84684 * 7 6 5 9 9 O 1.21693 * 120.00434 * 359.68997 * 8 7 6 10 10 N 1.34777 * 119.99308 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99724 * 179.72494 * 10 8 7 12 12 H 1.08997 * 112.84861 * 336.19585 * 11 10 8 13 13 C 1.53774 * 113.61385 * 107.50723 * 11 10 8 14 14 C 1.53777 * 87.08381 * 89.11575 * 13 11 10 15 15 H 1.08997 * 113.69135 * 270.87130 * 14 13 11 16 16 C 1.53000 * 113.61574 * 139.97935 * 14 13 11 17 17 N 1.46509 * 109.47135 * 87.50177 * 16 14 13 18 18 C 1.34943 * 126.03370 * 124.99990 * 17 16 14 19 19 C 1.35324 * 107.74166 * 179.97438 * 18 17 16 20 20 C 1.39868 * 107.92119 * 0.02562 * 19 18 17 21 21 N 1.30840 * 108.20369 * 359.73752 * 20 19 18 22 22 C 1.53783 * 87.08256 * 25.43074 * 14 13 11 23 23 N 1.35531 * 125.56689 * 65.00403 * 4 2 1 24 24 H 0.96691 * 114.00184 * 300.00253 * 1 2 3 25 25 H 1.09002 * 109.46826 * 239.99801 * 2 1 3 26 26 H 1.48492 * 110.00121 * 178.68178 * 3 2 1 27 27 H 1.48502 * 109.99597 * 300.00028 * 3 2 1 28 28 H 1.07999 * 126.06794 * 359.95247 * 5 4 2 29 29 H 1.08002 * 126.45510 * 180.27202 * 6 5 4 30 30 H 0.97000 * 120.00483 * 359.72926 * 10 8 7 31 31 H 1.09001 * 113.61238 * 203.66364 * 13 11 10 32 32 H 1.09000 * 113.61679 * 334.56289 * 13 11 10 33 33 H 1.08997 * 109.47568 * 207.50010 * 16 14 13 34 34 H 1.09000 * 109.47101 * 327.50715 * 16 14 13 35 35 H 1.07999 * 126.13344 * 359.97438 * 18 17 16 36 36 H 1.08002 * 126.03579 * 179.97438 * 19 18 17 37 37 H 1.08002 * 125.89937 * 180.02562 * 20 19 18 38 38 H 1.08989 * 113.61450 * 220.01957 * 22 14 13 39 39 H 1.09004 * 113.68674 * 89.12996 * 22 14 13 40 40 H 0.97001 * 125.67250 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6326 -0.1392 2.2388 6 6 2.9018 -1.1295 3.1887 7 6 2.3529 -2.3031 2.7171 8 6 2.3936 -3.6087 3.3844 9 8 2.9569 -3.7268 4.4566 10 7 1.8121 -4.6788 2.8071 11 6 1.8579 -5.9841 3.4706 12 1 2.6926 -6.0766 4.1655 13 6 0.5083 -6.4211 4.0641 14 6 0.2064 -7.0652 2.7008 15 1 -0.2794 -6.3907 1.9957 16 6 -0.4947 -8.4210 2.8052 17 7 -1.9441 -8.2175 2.8716 18 6 -2.8617 -8.7707 2.0513 19 6 -4.0813 -8.3344 2.4431 20 6 -3.9027 -7.4852 3.5400 21 7 -2.6224 -7.4185 3.8011 22 6 1.7277 -7.1720 2.5027 23 7 1.7548 -2.0250 1.5090 24 1 -0.3933 0.4417 0.7649 25 1 1.7923 -0.5139 -0.8900 26 1 3.5346 1.7703 0.0321 27 1 1.5615 2.4678 -1.2085 28 1 2.9278 0.8978 2.3001 29 1 3.4404 -1.0000 4.1158 30 1 1.3633 -4.5847 1.9523 31 1 0.6015 -7.1419 4.8765 32 1 -0.1510 -5.5885 4.3093 33 1 -0.2522 -9.0239 1.9301 34 1 -0.1586 -8.9355 3.7054 35 1 -2.6592 -9.4413 1.2293 36 1 -5.0257 -8.5952 1.9885 37 1 -4.6867 -6.9763 4.0812 38 1 2.0527 -6.9456 1.4873 39 1 2.1555 -8.0978 2.8875 40 1 1.2846 -2.6635 0.9502 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688104_6580494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:30:12 Heat of formation + Delta-G solvation = 87.850003 kcal Electronic energy + Delta-G solvation = -23907.369249 eV Core-core repulsion = 20306.256267 eV Total energy + Delta-G solvation = -3601.112983 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.59612 -42.05967 -41.04232 -39.35197 -37.69258 -35.22264 -33.61792 -32.15611 -31.38786 -30.94133 -28.68103 -26.92133 -26.74860 -24.50992 -23.31920 -21.92948 -21.71506 -21.62376 -21.17922 -20.35724 -19.92807 -18.28134 -18.04059 -17.20388 -16.75609 -16.57954 -16.16520 -16.08077 -15.73175 -15.34558 -15.16438 -15.00879 -14.84335 -14.58486 -14.46192 -14.35090 -14.00193 -13.75064 -13.66662 -13.58666 -13.44371 -12.87144 -12.27520 -12.23070 -12.08659 -11.74072 -11.60781 -11.41947 -11.28798 -10.68359 -10.36805 -10.29409 -10.11408 -9.49826 -9.32451 -4.91632 0.24001 1.00170 1.21524 1.50476 1.66232 1.71334 1.85583 1.94339 1.94637 2.17642 2.20538 3.29444 3.39634 3.44773 3.57161 3.62677 3.68164 3.76516 3.98667 4.07267 4.18209 4.21762 4.27149 4.32970 4.40720 4.43739 4.61188 4.69625 4.75282 4.77472 4.89683 4.91796 4.95969 4.99299 5.05534 5.08834 5.15207 5.43085 5.56014 5.74572 5.75716 6.18227 6.20917 6.38021 6.64683 6.78589 6.95940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.056 4.056 3 Si 0.805 3.195 4 C 0.029 3.971 5 C -0.203 4.203 6 C -0.116 4.116 7 C -0.067 4.067 8 C 0.590 3.410 9 O -0.569 6.569 10 N -0.700 5.700 11 C 0.109 3.891 12 H 0.090 0.910 13 C -0.135 4.135 14 C -0.109 4.109 15 H 0.087 0.913 16 C 0.135 3.865 17 N -0.376 5.376 18 C 0.052 3.948 19 C -0.293 4.293 20 C 0.025 3.975 21 N -0.331 5.331 22 C -0.116 4.116 23 N -0.514 5.514 24 H 0.399 0.601 25 H 0.116 0.884 26 H -0.285 1.285 27 H -0.294 1.294 28 H 0.172 0.828 29 H 0.147 0.853 30 H 0.407 0.593 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.131 0.869 34 H 0.089 0.911 35 H 0.206 0.794 36 H 0.159 0.841 37 H 0.193 0.807 38 H 0.092 0.908 39 H 0.120 0.880 40 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.624 -1.680 -5.326 5.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.166 4.166 3 Si 0.709 3.291 4 C -0.090 4.090 5 C -0.227 4.227 6 C -0.143 4.143 7 C -0.181 4.181 8 C 0.379 3.621 9 O -0.448 6.448 10 N -0.351 5.351 11 C 0.004 3.996 12 H 0.109 0.891 13 C -0.174 4.174 14 C -0.128 4.128 15 H 0.105 0.895 16 C 0.014 3.986 17 N -0.159 5.159 18 C -0.094 4.094 19 C -0.322 4.322 20 C -0.160 4.160 21 N -0.153 5.153 22 C -0.154 4.154 23 N -0.111 5.111 24 H 0.249 0.751 25 H 0.134 0.866 26 H -0.211 1.211 27 H -0.222 1.222 28 H 0.190 0.810 29 H 0.165 0.835 30 H 0.243 0.757 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.149 0.851 34 H 0.107 0.893 35 H 0.223 0.777 36 H 0.177 0.823 37 H 0.209 0.791 38 H 0.111 0.889 39 H 0.139 0.861 40 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 0.307 -1.205 -4.848 5.004 hybrid contribution -1.147 -1.200 -0.978 1.927 sum -0.840 -2.405 -5.826 6.358 Atomic orbital electron populations 1.86475 1.16907 1.82179 1.50754 1.25089 0.85351 1.11420 0.94714 0.92928 0.77826 0.73689 0.84670 1.21398 1.03881 0.84117 0.99606 1.20972 1.06054 1.00936 0.94744 1.21519 1.01251 0.90914 1.00591 1.20293 1.11118 0.95376 0.91289 1.17263 0.77768 0.82999 0.84077 1.90842 1.46111 1.85042 1.22803 1.45437 1.56916 1.08181 1.24558 1.21963 0.98772 0.82268 0.96575 0.89144 1.23370 0.96057 1.00470 0.97501 1.22756 0.96016 0.96212 0.97827 0.89497 1.22062 0.73258 0.97831 1.05401 1.48994 1.07539 1.35948 1.23386 1.23193 0.89123 0.99579 0.97513 1.21861 0.99415 1.07739 1.03214 1.24315 0.94222 0.99409 0.98062 1.77343 1.07101 1.16479 1.14383 1.23296 0.93506 0.98113 1.00482 1.41904 1.42565 1.09717 1.16914 0.75079 0.86623 1.21127 1.22196 0.81042 0.83530 0.75724 0.88918 0.93382 0.85145 0.89260 0.77686 0.82293 0.79064 0.88932 0.86146 0.73501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.98 12.88 -148.98 -1.92 0.06 16 2 C -0.06 0.24 3.08 71.24 0.22 0.45 16 3 Si 0.81 -4.03 30.56 68.60 2.10 -1.93 16 4 C 0.03 -0.05 6.46 41.34 0.27 0.22 16 5 C -0.20 0.05 9.32 22.01 0.21 0.25 16 6 C -0.12 -0.55 10.65 22.57 0.24 -0.31 16 7 C -0.07 -0.30 7.06 40.35 0.28 -0.01 16 8 C 0.59 4.40 7.79 86.45 0.67 5.07 16 9 O -0.57 -9.11 16.48 -4.33 -0.07 -9.18 16 10 N -0.70 -0.22 5.26 -443.99 -2.33 -2.55 16 11 C 0.11 -0.03 4.32 45.52 0.20 0.17 16 12 H 0.09 0.36 7.46 -2.39 -0.02 0.34 16 13 C -0.14 -0.11 7.43 31.12 0.23 0.12 16 14 C -0.11 0.52 3.71 -10.27 -0.04 0.48 16 15 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 16 C 0.13 -0.73 6.35 86.38 0.55 -0.19 16 17 N -0.38 -0.48 3.68 -348.04 -1.28 -1.76 16 18 C 0.05 -0.07 11.45 83.54 0.96 0.89 16 19 C -0.29 -0.41 10.80 21.99 0.24 -0.17 16 20 C 0.03 0.12 12.03 85.24 1.02 1.14 16 21 N -0.33 -2.45 12.42 -57.02 -0.71 -3.16 16 22 C -0.12 0.89 7.39 31.12 0.23 1.12 16 23 N -0.51 0.71 5.99 -171.94 -1.03 -0.32 16 24 H 0.40 -4.18 8.70 -74.06 -0.64 -4.82 16 25 H 0.12 -0.50 7.96 -2.39 -0.02 -0.52 16 26 H -0.28 -0.15 7.11 99.48 0.71 0.55 16 27 H -0.29 -0.60 7.11 99.48 0.71 0.11 16 28 H 0.17 -0.90 6.19 -2.91 -0.02 -0.92 16 29 H 0.15 0.77 8.06 -2.91 -0.02 0.75 16 30 H 0.41 -2.15 7.83 -92.71 -0.73 -2.88 16 31 H 0.09 0.09 7.90 -2.39 -0.02 0.07 16 32 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.13 -1.56 8.07 -2.39 -0.02 -1.58 16 34 H 0.09 -0.48 7.84 -2.39 -0.02 -0.50 16 35 H 0.21 -1.92 8.06 -2.91 -0.02 -1.95 16 36 H 0.16 -0.37 8.06 -2.91 -0.02 -0.39 16 37 H 0.19 0.04 8.06 -2.91 -0.02 0.02 16 38 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 39 H 0.12 -1.28 8.10 -2.39 -0.02 -1.30 16 40 H 0.43 -2.63 8.19 -92.71 -0.76 -3.39 16 Total: 0.00 -25.98 344.22 -0.97 -26.94 By element: Atomic # 1 Polarization: -16.33 SS G_CDS: -1.00 Total: -17.33 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 5.28 Total: 9.24 kcal Atomic # 7 Polarization: -2.45 SS G_CDS: -5.35 Total: -7.80 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -1.99 Total: -9.12 kcal Atomic # 14 Polarization: -4.03 SS G_CDS: 2.10 Total: -1.93 kcal Total: -25.98 -0.97 -26.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688104_6580494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.795 kcal (2) G-P(sol) polarization free energy of solvation -25.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds