Wall clock time and date at job start Tue Mar 9 2021 12:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86298 * 109.47636 * 2 1 4 4 C 1.50701 * 109.46660 * 119.99886 * 2 1 3 5 5 C 1.38239 * 120.00157 * 64.99730 * 4 2 1 6 6 C 1.38232 * 119.99980 * 179.97438 * 5 4 2 7 7 C 1.38242 * 120.00132 * 359.95389 * 6 5 4 8 8 C 1.50703 * 119.99660 * 180.02562 * 7 6 5 9 9 C 1.50692 * 109.46879 * 90.00634 * 8 7 6 10 10 O 1.21284 * 120.00657 * 359.97438 * 9 8 7 11 11 N 1.34788 * 120.00020 * 179.97438 * 9 8 7 12 12 C 1.46495 * 119.99843 * 180.02562 * 11 9 8 13 13 H 1.08996 * 112.85871 * 23.79825 * 12 11 9 14 14 C 1.53781 * 113.61307 * 154.99869 * 12 11 9 15 15 C 1.53783 * 87.08306 * 89.11069 * 14 12 11 16 16 H 1.08998 * 113.61300 * 270.79937 * 15 14 12 17 17 C 1.52999 * 113.61446 * 139.98057 * 15 14 12 18 18 N 1.46500 * 109.47084 * 174.99740 * 17 15 14 19 19 C 1.34429 * 126.81895 * 124.99739 * 18 17 15 20 20 N 1.30837 * 108.07952 * 180.02562 * 19 18 17 21 21 C 1.33246 * 109.82318 * 359.97438 * 20 19 18 22 22 N 1.30712 * 108.94935 * 0.27015 * 21 20 19 23 23 C 1.53783 * 113.61117 * 252.49203 * 12 11 9 24 24 C 1.38232 * 119.99721 * 0.27611 * 7 6 5 25 25 C 1.38233 * 120.00263 * 359.51827 * 24 7 6 26 26 H 0.96706 * 113.99863 * 300.00808 * 1 2 3 27 27 H 1.08995 * 109.47084 * 239.99221 * 2 1 3 28 28 H 1.48503 * 109.99879 * 178.68075 * 3 2 1 29 29 H 1.48497 * 109.99768 * 299.99955 * 3 2 1 30 30 H 1.07996 * 120.00049 * 359.97438 * 5 4 2 31 31 H 1.08001 * 120.00174 * 179.97438 * 6 5 4 32 32 H 1.08995 * 109.47171 * 329.99823 * 8 7 6 33 33 H 1.09003 * 109.46745 * 209.99625 * 8 7 6 34 34 H 0.96998 * 119.99685 * 359.97438 * 11 9 8 35 35 H 1.09001 * 113.61192 * 334.56408 * 14 12 11 36 36 H 1.09000 * 113.61565 * 203.65678 * 14 12 11 37 37 H 1.09002 * 109.47279 * 55.00027 * 17 15 14 38 38 H 1.08995 * 109.47424 * 295.00206 * 17 15 14 39 39 H 1.08000 * 125.96340 * 359.97438 * 19 18 17 40 40 H 1.08002 * 125.52127 * 179.97438 * 21 20 19 41 41 H 1.08995 * 113.61677 * 156.34169 * 23 12 11 42 42 H 1.08999 * 113.61392 * 25.43345 * 23 12 11 43 43 H 1.08002 * 119.99759 * 179.71814 * 24 7 6 44 44 H 1.07994 * 120.00574 * 180.25198 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0502 1.7564 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 1.6845 -2.0602 1.3985 6 6 2.1457 -2.7119 2.5270 7 6 2.8544 -2.0141 3.4871 8 6 3.3576 -2.7248 4.7170 9 6 4.7385 -3.2675 4.4539 10 8 5.2625 -3.0947 3.3738 11 7 5.3916 -3.9451 5.4189 12 6 6.7343 -4.4721 5.1631 13 1 7.2561 -3.9353 4.3710 14 6 7.5751 -4.6604 6.4369 15 6 6.9788 -6.0750 6.5270 16 1 6.0475 -6.1212 7.0913 17 6 7.9891 -7.1395 6.9597 18 7 7.3032 -8.4227 7.1308 19 6 7.6161 -9.5886 6.5393 20 7 6.7662 -10.4939 6.9515 21 6 5.9003 -9.9463 7.8034 22 7 6.1850 -8.6780 7.9413 23 6 6.7759 -6.0012 5.0044 24 6 3.0970 -0.6633 3.3214 25 6 2.6395 -0.0125 2.1909 26 1 -0.3933 0.4418 0.7650 27 1 1.7923 -0.5139 -0.8899 28 1 3.5348 1.7700 0.0321 29 1 1.5617 2.4678 -1.2085 30 1 1.1315 -2.6055 0.6481 31 1 1.9526 -3.7663 2.6584 32 1 2.6849 -3.5465 4.9626 33 1 3.3955 -2.0244 5.5514 34 1 4.9728 -4.0830 6.2828 35 1 7.2766 -4.0078 7.2574 36 1 8.6499 -4.6503 6.2561 37 1 8.4470 -6.8436 7.9035 38 1 8.7612 -7.2391 6.1968 39 1 8.4270 -9.7497 5.8444 40 1 5.0913 -10.4651 8.2960 41 1 7.6322 -6.3576 4.4320 42 1 5.8323 -6.4311 4.6684 43 1 3.6467 -0.1172 4.0736 44 1 2.8325 1.0419 2.0594 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_12335836.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:08 Heat of formation + Delta-G solvation = 79.923270 kcal Electronic energy + Delta-G solvation = -26564.532206 eV Core-core repulsion = 22679.311735 eV Total energy + Delta-G solvation = -3885.220471 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.98564 -41.47180 -40.57322 -39.41451 -37.63634 -35.39924 -34.22641 -33.64223 -32.15924 -31.96326 -30.00381 -28.82570 -26.74559 -25.92932 -24.47061 -23.83906 -22.95329 -22.59634 -22.27537 -21.41446 -20.18967 -18.54153 -18.40475 -18.02381 -17.37509 -16.91247 -16.90609 -16.54587 -16.32560 -16.03504 -15.95265 -15.67476 -15.55682 -15.15369 -14.97745 -14.77859 -14.69727 -14.50206 -14.12599 -13.86384 -13.52095 -13.33864 -13.27746 -13.06641 -12.90095 -12.69449 -12.27995 -12.15205 -12.02352 -11.75425 -11.72934 -11.42872 -11.04753 -10.96632 -10.78586 -10.50605 -10.45992 -10.08836 -9.90244 -9.64746 -5.04953 0.21178 0.42647 0.69795 1.28045 1.44777 1.57401 1.61184 1.92522 2.01061 2.10768 2.75936 3.39015 3.46563 3.48503 3.48629 3.53955 3.61047 3.76226 3.78504 3.88584 3.93425 3.99821 4.03253 4.15621 4.19931 4.32041 4.44232 4.46197 4.49488 4.52705 4.57717 4.68072 4.69146 4.73799 4.82460 4.95252 4.99887 5.02832 5.06099 5.18451 5.31237 5.35117 5.46274 5.51011 5.56294 5.57911 5.94072 5.99054 6.49268 6.74595 7.13289 7.21675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.077 4.077 3 Si 0.783 3.217 4 C -0.128 4.128 5 C -0.109 4.109 6 C -0.118 4.118 7 C -0.071 4.071 8 C -0.099 4.099 9 C 0.515 3.485 10 O -0.579 6.579 11 N -0.705 5.705 12 C 0.112 3.888 13 H 0.085 0.915 14 C -0.118 4.118 15 C -0.113 4.113 16 H 0.089 0.911 17 C 0.131 3.869 18 N -0.376 5.376 19 C 0.254 3.746 20 N -0.586 5.586 21 C 0.185 3.815 22 N -0.346 5.346 23 C -0.146 4.146 24 C -0.109 4.109 25 C -0.121 4.121 26 H 0.395 0.605 27 H 0.099 0.901 28 H -0.292 1.292 29 H -0.297 1.297 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.136 0.864 34 H 0.415 0.585 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.135 0.865 39 H 0.255 0.745 40 H 0.232 0.768 41 H 0.105 0.895 42 H 0.046 0.954 43 H 0.145 0.855 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.385 2.757 6.767 7.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.186 4.186 3 Si 0.689 3.311 4 C -0.129 4.129 5 C -0.127 4.127 6 C -0.136 4.136 7 C -0.072 4.072 8 C -0.138 4.138 9 C 0.303 3.697 10 O -0.458 6.458 11 N -0.357 5.357 12 C 0.006 3.994 13 H 0.103 0.897 14 C -0.156 4.156 15 C -0.132 4.132 16 H 0.107 0.893 17 C 0.010 3.990 18 N -0.166 5.166 19 C -0.042 4.042 20 N -0.314 5.314 21 C -0.117 4.117 22 N -0.174 5.174 23 C -0.185 4.185 24 C -0.127 4.127 25 C -0.138 4.138 26 H 0.245 0.755 27 H 0.117 0.883 28 H -0.219 1.219 29 H -0.225 1.225 30 H 0.139 0.861 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.154 0.846 34 H 0.252 0.748 35 H 0.107 0.893 36 H 0.138 0.862 37 H 0.119 0.881 38 H 0.153 0.847 39 H 0.270 0.730 40 H 0.248 0.752 41 H 0.123 0.877 42 H 0.065 0.935 43 H 0.163 0.837 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.963 3.393 5.402 7.034 hybrid contribution -0.084 -1.021 -0.302 1.069 sum 2.879 2.372 5.100 6.318 Atomic orbital electron populations 1.86463 1.17155 1.82238 1.50483 1.25211 0.85349 1.11077 0.97009 0.93742 0.77526 0.75153 0.84637 1.20414 1.00251 0.95049 0.97138 1.21083 0.99449 0.94329 0.97862 1.21217 0.98248 1.00114 0.94024 1.19564 0.97465 0.94113 0.96025 1.20760 0.92570 1.02761 0.97686 1.21038 0.88074 0.77038 0.83565 1.90743 1.69576 1.59360 1.26098 1.45639 1.17295 1.55835 1.16916 1.21828 0.83749 0.94258 0.99597 0.89680 1.23292 1.01271 0.94423 0.96625 1.22804 0.99392 0.94887 0.96127 0.89251 1.22263 0.94084 0.77730 1.04892 1.50748 1.22411 1.10964 1.32500 1.26829 0.99217 0.81207 0.96974 1.70551 1.08726 1.34437 1.17697 1.26452 0.99681 0.89253 0.96359 1.77919 1.03878 1.18377 1.17255 1.23541 1.02458 0.96155 0.96313 1.21251 0.99025 0.94186 0.98198 1.21172 0.98412 1.00086 0.94114 0.75460 0.88299 1.21906 1.22534 0.86121 0.85448 0.85744 0.84609 0.74786 0.89341 0.86227 0.88087 0.84672 0.72958 0.75226 0.87684 0.93507 0.83740 0.83810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.50 12.83 -148.98 -1.91 -3.42 16 2 C -0.08 -0.22 2.80 71.24 0.20 -0.02 16 3 Si 0.78 0.13 29.80 68.60 2.04 2.17 16 4 C -0.13 -0.49 5.35 -19.86 -0.11 -0.59 16 5 C -0.11 -0.59 9.69 22.27 0.22 -0.37 16 6 C -0.12 -0.46 9.70 22.27 0.22 -0.25 16 7 C -0.07 -0.11 4.37 -19.86 -0.09 -0.20 16 8 C -0.10 0.45 5.83 29.10 0.17 0.62 16 9 C 0.51 0.69 7.82 87.65 0.69 1.38 16 10 O -0.58 -6.79 15.63 -3.04 -0.05 -6.84 16 11 N -0.70 2.97 5.26 -440.04 -2.32 0.65 16 12 C 0.11 -0.45 4.32 45.52 0.20 -0.25 16 13 H 0.09 0.07 7.46 -2.39 -0.02 0.05 16 14 C -0.12 1.20 7.39 31.12 0.23 1.43 16 15 C -0.11 0.87 3.75 -10.27 -0.04 0.84 16 16 H 0.09 -0.35 7.99 -2.39 -0.02 -0.37 16 17 C 0.13 -1.17 6.39 86.38 0.55 -0.62 16 18 N -0.38 0.51 3.69 -352.06 -1.30 -0.79 16 19 C 0.25 -0.32 12.63 180.36 2.28 1.96 16 20 N -0.59 -3.28 11.19 -203.99 -2.28 -5.56 16 21 C 0.19 0.82 13.03 180.76 2.36 3.18 16 22 N -0.35 -1.55 12.44 -61.24 -0.76 -2.31 16 23 C -0.15 0.68 7.43 31.12 0.23 0.91 16 24 C -0.11 -0.10 9.70 22.27 0.22 0.11 16 25 C -0.12 -0.17 8.67 22.27 0.19 0.02 16 26 H 0.40 -2.32 8.70 -74.05 -0.64 -2.97 16 27 H 0.10 0.49 7.96 -2.39 -0.02 0.47 16 28 H -0.29 -1.68 7.11 99.48 0.71 -0.97 16 29 H -0.30 -2.12 7.11 99.48 0.71 -1.41 16 30 H 0.12 0.61 8.06 -2.91 -0.02 0.59 16 31 H 0.13 0.19 8.06 -2.91 -0.02 0.16 16 32 H 0.12 -1.05 8.09 -2.39 -0.02 -1.07 16 33 H 0.14 -1.43 8.08 -2.39 -0.02 -1.45 16 34 H 0.42 -3.97 8.70 -92.71 -0.81 -4.78 16 35 H 0.09 -0.96 8.14 -2.39 -0.02 -0.98 16 36 H 0.12 -1.61 8.10 -2.39 -0.02 -1.63 16 37 H 0.10 -1.02 8.14 -2.39 -0.02 -1.04 16 38 H 0.14 -2.05 7.79 -2.39 -0.02 -2.07 16 39 H 0.25 -2.77 8.06 -2.91 -0.02 -2.80 16 40 H 0.23 -0.30 8.06 -2.91 -0.02 -0.33 16 41 H 0.10 -0.76 7.90 -2.39 -0.02 -0.77 16 42 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 43 H 0.14 -0.55 8.06 -2.91 -0.02 -0.58 16 44 H 0.14 -0.47 4.91 -2.91 -0.01 -0.48 16 Total: 0.00 -30.91 374.35 0.55 -30.36 By element: Atomic # 1 Polarization: -22.03 SS G_CDS: -0.38 Total: -22.41 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 7.51 Total: 8.14 kcal Atomic # 7 Polarization: -1.36 SS G_CDS: -6.66 Total: -8.02 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -1.96 Total: -10.25 kcal Atomic # 14 Polarization: 0.13 SS G_CDS: 2.04 Total: 2.17 kcal Total: -30.91 0.55 -30.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_12335836.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.279 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds