Wall clock time and date at job start Tue Mar 9 2021 12:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50699 * 109.47249 * 239.99737 * 2 1 3 5 5 C 1.34456 * 126.48419 * 104.69164 * 4 2 1 6 6 N 1.36558 * 109.99092 * 179.89361 * 5 4 2 7 7 C 1.37834 * 109.85849 * 0.38183 * 6 5 4 8 8 C 1.38639 * 133.38281 * 179.68417 * 7 6 5 9 9 C 1.39318 * 119.66908 * 180.02562 * 8 7 6 10 10 C 1.47573 * 119.83668 * 180.02562 * 9 8 7 11 11 O 1.21586 * 119.99812 * 0.03017 * 10 9 8 12 12 N 1.34771 * 120.00478 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00378 * 180.02562 * 12 10 9 14 14 H 1.09001 * 112.84702 * 336.19755 * 13 12 10 15 15 C 1.53776 * 113.61733 * 107.50684 * 13 12 10 16 16 C 1.53776 * 87.08340 * 89.11456 * 15 13 12 17 17 H 1.08997 * 113.69424 * 270.86993 * 16 15 13 18 18 C 1.53006 * 113.61471 * 139.98432 * 16 15 13 19 19 N 1.46495 * 109.47116 * 87.50233 * 18 16 15 20 20 C 1.34436 * 126.81816 * 124.71388 * 19 18 16 21 21 N 1.30835 * 108.07241 * 179.89275 * 20 19 18 22 22 C 1.33239 * 109.83045 * 0.37606 * 21 20 19 23 23 N 1.30718 * 108.94888 * 359.76665 * 22 21 20 24 24 C 1.53779 * 87.08163 * 25.43487 * 16 15 13 25 25 C 1.40205 * 120.33419 * 0.04618 * 9 8 7 26 26 C 1.36230 * 120.37772 * 359.97438 * 25 9 8 27 27 C 1.39874 * 119.96025 * 359.97438 * 26 25 9 28 28 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 29 29 H 1.09004 * 109.47449 * 120.00278 * 2 1 3 30 30 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 31 31 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 32 32 H 1.08005 * 125.00040 * 0.03590 * 5 4 2 33 33 H 0.96995 * 125.07330 * 180.19663 * 6 5 4 34 34 H 1.08000 * 120.16718 * 0.03430 * 8 7 6 35 35 H 0.97007 * 119.99751 * 0.02562 * 12 10 9 36 36 H 1.08999 * 113.61971 * 203.66574 * 15 13 12 37 37 H 1.09000 * 113.61523 * 334.56747 * 15 13 12 38 38 H 1.09003 * 109.47096 * 207.50684 * 18 16 15 39 39 H 1.09003 * 109.46619 * 327.50385 * 18 16 15 40 40 H 1.07991 * 125.96232 * 0.03318 * 20 19 18 41 41 H 1.08004 * 125.52876 * 179.72440 * 22 21 20 42 42 H 1.09000 * 113.61536 * 220.01871 * 24 16 15 43 43 H 1.09002 * 113.69029 * 89.12604 * 24 16 15 44 44 H 1.08002 * 119.81025 * 179.97438 * 25 9 8 45 45 H 1.08003 * 120.02187 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.4563 -0.1361 -2.3269 6 7 2.8022 -1.0947 -3.2359 7 6 2.4938 -2.3432 -2.7400 8 6 2.6285 -3.6278 -3.2437 9 6 2.2112 -4.7154 -2.4796 10 6 2.3534 -6.0844 -3.0119 11 8 2.8343 -6.2610 -4.1146 12 7 1.9503 -7.1390 -2.2758 13 6 2.0920 -8.4981 -2.8040 14 1 2.1324 -8.5268 -3.8929 15 6 3.2055 -9.3109 -2.1227 16 6 2.1455 -9.7603 -1.1033 17 1 2.0539 -9.0953 -0.2446 18 6 2.2644 -11.2326 -0.7043 19 7 3.1955 -11.3604 0.4195 20 6 2.9491 -11.9376 1.6083 21 7 4.0337 -11.8496 2.3348 22 6 4.9864 -11.2183 1.6500 23 7 4.5210 -10.8988 0.4711 24 6 1.0967 -9.5015 -2.1978 25 6 1.6564 -4.5159 -1.2075 26 6 1.5200 -3.2569 -0.7052 27 6 1.9353 -2.1549 -1.4599 28 1 -0.3934 0.4417 -0.7651 29 1 1.7923 -0.5139 0.8900 30 1 1.5879 2.4585 -1.2243 31 1 1.5615 2.4679 1.2085 32 1 2.5873 0.9268 -2.4670 33 1 3.2026 -0.9225 -4.1024 34 1 3.0550 -3.7846 -4.2235 35 1 1.5664 -6.9981 -1.3962 36 1 3.5919 -10.1235 -2.7379 37 1 3.9936 -8.6946 -1.6901 38 1 1.2850 -11.6094 -0.4093 39 1 2.6357 -11.8097 -1.5512 40 1 2.0191 -12.3962 1.9101 41 1 5.9818 -11.0045 2.0107 42 1 0.1825 -9.0391 -1.8258 43 1 0.9055 -10.3655 -2.8342 44 1 1.3353 -5.3651 -0.6226 45 1 1.0915 -3.1098 0.2752 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688106_12335838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:12 Heat of formation + Delta-G solvation = 121.540863 kcal Electronic energy + Delta-G solvation = -29751.455682 eV Core-core repulsion = 25546.161694 eV Total energy + Delta-G solvation = -4205.293989 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.96324 -42.50757 -41.33106 -39.65827 -37.95975 -37.48513 -35.45252 -33.89753 -33.28289 -32.09770 -30.75583 -30.67641 -29.04227 -26.85969 -26.56678 -25.35000 -24.09922 -23.64302 -22.86780 -22.40938 -21.64733 -20.86588 -20.40879 -19.47740 -18.54170 -18.22319 -17.67517 -17.18394 -17.00530 -16.82843 -16.34709 -16.17579 -15.96418 -15.84766 -15.69386 -15.32975 -15.30585 -15.09708 -14.81408 -14.73366 -14.73113 -14.47455 -14.11255 -13.90067 -13.61963 -13.20721 -13.12390 -12.90037 -12.63242 -12.50539 -12.33373 -12.19650 -11.81570 -11.77714 -11.40172 -10.94578 -10.89428 -10.77689 -10.70056 -10.58584 -10.50991 -10.09130 -9.37402 -8.83848 -4.99027 -0.27954 0.37877 0.71279 1.26890 1.33701 1.34514 1.52398 1.83651 1.92775 1.99852 2.08564 2.17722 2.91076 3.12804 3.29964 3.42067 3.45043 3.47875 3.55174 3.64835 3.71621 3.74013 3.84038 3.88183 3.97923 4.00632 4.07774 4.23898 4.29751 4.41226 4.41914 4.47156 4.52933 4.54823 4.58584 4.70156 4.76226 4.86026 4.97362 5.02087 5.04699 5.21794 5.32368 5.41777 5.43957 5.52100 5.55407 5.59302 5.84533 5.96726 6.33578 6.45789 6.47019 7.17732 7.21776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.038 4.038 3 Si 0.685 3.315 4 C -0.206 4.206 5 C 0.075 3.925 6 N -0.583 5.583 7 C 0.082 3.918 8 C -0.055 4.055 9 C -0.121 4.121 10 C 0.567 3.433 11 O -0.535 6.535 12 N -0.709 5.709 13 C 0.119 3.881 14 H 0.108 0.892 15 C -0.134 4.134 16 C -0.123 4.123 17 H 0.095 0.905 18 C 0.137 3.863 19 N -0.378 5.378 20 C 0.251 3.749 21 N -0.547 5.547 22 C 0.196 3.804 23 N -0.311 5.311 24 C -0.137 4.137 25 C -0.113 4.113 26 C -0.071 4.071 27 C -0.062 4.062 28 H 0.374 0.626 29 H 0.115 0.885 30 H -0.260 1.260 31 H -0.256 1.256 32 H 0.176 0.824 33 H 0.422 0.578 34 H 0.136 0.864 35 H 0.401 0.599 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.218 0.782 41 H 0.216 0.784 42 H 0.080 0.920 43 H 0.102 0.898 44 H 0.124 0.876 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.915 1.250 -0.326 2.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.148 4.148 3 Si 0.586 3.414 4 C -0.214 4.214 5 C -0.054 4.054 6 N -0.185 5.185 7 C -0.025 4.025 8 C -0.077 4.077 9 C -0.126 4.126 10 C 0.355 3.645 11 O -0.413 6.413 12 N -0.361 5.361 13 C 0.014 3.986 14 H 0.126 0.874 15 C -0.173 4.173 16 C -0.142 4.142 17 H 0.113 0.887 18 C 0.015 3.985 19 N -0.169 5.169 20 C -0.046 4.046 21 N -0.274 5.274 22 C -0.107 4.107 23 N -0.139 5.139 24 C -0.176 4.176 25 C -0.133 4.133 26 C -0.090 4.090 27 C -0.067 4.067 28 H 0.221 0.779 29 H 0.133 0.867 30 H -0.185 1.185 31 H -0.180 1.180 32 H 0.193 0.807 33 H 0.260 0.740 34 H 0.154 0.846 35 H 0.237 0.763 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.234 0.766 41 H 0.232 0.768 42 H 0.098 0.902 43 H 0.120 0.880 44 H 0.142 0.858 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.235 1.935 -0.975 2.493 hybrid contribution -1.284 -0.144 -0.467 1.374 sum -2.519 1.791 -1.442 3.410 Atomic orbital electron populations 1.86609 1.18061 1.79933 1.49076 1.24294 0.83387 1.09926 0.97233 0.95145 0.91506 0.74263 0.80526 1.20672 1.10665 0.92058 0.98011 1.21827 0.99690 0.94498 0.89415 1.41721 1.54553 1.03999 1.18263 1.18076 1.03234 0.86297 0.94856 1.20071 0.99382 0.88068 1.00141 1.19395 1.05118 0.92238 0.95830 1.18142 0.77277 0.84496 0.84542 1.90795 1.44158 1.86167 1.20171 1.45540 1.64361 1.05304 1.20883 1.21831 0.96387 0.80590 0.99819 0.87439 1.23415 0.96890 1.00027 0.96983 1.22909 0.98297 0.94950 0.98030 0.88670 1.21926 0.91093 0.97987 0.87470 1.50600 1.10192 1.42715 1.13439 1.26124 0.99779 0.95838 0.82870 1.70562 1.00261 1.23164 1.33409 1.26072 1.00404 0.95805 0.88449 1.78100 0.91194 1.22880 1.21722 1.23360 0.97221 0.99679 0.97316 1.20665 1.00660 0.97310 0.94683 1.20198 0.98671 0.90452 0.99682 1.19168 1.00980 0.93042 0.93546 0.77887 0.86714 1.18491 1.18042 0.80678 0.73997 0.84587 0.76330 0.88835 0.90471 0.87764 0.88913 0.76608 0.76769 0.90169 0.87986 0.85808 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.54 12.88 -35.23 -0.45 -0.99 16 2 C -0.04 0.02 3.06 36.01 0.11 0.13 16 3 Si 0.68 -1.33 30.83 -169.99 -5.24 -6.57 16 4 C -0.21 0.01 5.57 -102.74 -0.57 -0.56 16 5 C 0.07 -0.13 10.43 -16.78 -0.18 -0.30 16 6 N -0.58 0.76 6.07 -10.68 -0.06 0.70 16 7 C 0.08 0.10 7.26 -84.00 -0.61 -0.51 16 8 C -0.06 -0.11 9.61 -39.03 -0.37 -0.49 16 9 C -0.12 -0.23 5.87 -104.95 -0.62 -0.85 16 10 C 0.57 1.62 7.76 -12.46 -0.10 1.52 16 11 O -0.54 -3.42 15.91 5.29 0.08 -3.33 16 12 N -0.71 0.14 5.21 -54.05 -0.28 -0.14 16 13 C 0.12 -0.10 4.32 -67.12 -0.29 -0.39 16 14 H 0.11 0.09 7.46 -51.93 -0.39 -0.30 16 15 C -0.13 0.11 7.43 -25.92 -0.19 -0.09 16 16 C -0.12 0.35 3.73 -89.81 -0.33 0.02 16 17 H 0.10 -0.19 8.14 -51.93 -0.42 -0.62 16 18 C 0.14 -0.46 6.39 -4.04 -0.03 -0.48 16 19 N -0.38 0.02 3.69 -62.63 -0.23 -0.21 16 20 C 0.25 -0.05 12.63 -90.64 -1.14 -1.19 16 21 N -0.55 -1.55 11.19 -15.83 -0.18 -1.72 16 22 C 0.20 0.44 13.03 -91.81 -1.20 -0.75 16 23 N -0.31 -0.81 12.57 29.29 0.37 -0.44 16 24 C -0.14 0.52 7.39 -25.92 -0.19 0.33 16 25 C -0.11 -0.03 9.46 -39.57 -0.37 -0.40 16 26 C -0.07 -0.07 10.03 -39.69 -0.40 -0.46 16 27 C -0.06 -0.10 6.35 -105.04 -0.67 -0.77 16 28 H 0.37 -0.68 8.70 45.56 0.40 -0.28 16 29 H 0.12 -0.10 7.96 -51.93 -0.41 -0.52 16 30 H -0.26 0.18 6.99 56.52 0.40 0.57 16 31 H -0.26 -0.44 7.11 56.52 0.40 -0.03 16 32 H 0.18 -0.78 6.27 -52.48 -0.33 -1.11 16 33 H 0.42 -1.68 8.96 -40.82 -0.37 -2.05 16 34 H 0.14 0.25 7.62 -52.49 -0.40 -0.15 16 35 H 0.40 -0.96 6.69 -40.82 -0.27 -1.23 16 36 H 0.09 -0.09 7.90 -51.93 -0.41 -0.50 16 37 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.10 -0.64 8.09 -51.93 -0.42 -1.06 16 39 H 0.09 -0.33 7.84 -51.93 -0.41 -0.73 16 40 H 0.22 -0.99 8.06 -52.49 -0.42 -1.42 16 41 H 0.22 -0.14 8.06 -52.48 -0.42 -0.56 16 42 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 43 H 0.10 -0.50 8.10 -51.93 -0.42 -0.92 16 44 H 0.12 -0.30 6.36 -52.49 -0.33 -0.63 16 45 H 0.13 -0.03 8.06 -52.48 -0.42 -0.45 16 LS Contribution 383.31 15.07 5.78 5.78 Total: 0.00 -12.35 383.31 -12.88 -25.22 By element: Atomic # 1 Polarization: -7.54 SS G_CDS: -5.51 Total: -13.05 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -7.15 Total: -5.24 kcal Atomic # 7 Polarization: -1.43 SS G_CDS: -0.39 Total: -1.82 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -0.37 Total: -4.32 kcal Atomic # 14 Polarization: -1.33 SS G_CDS: -5.24 Total: -6.57 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -12.35 -12.88 -25.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_12335838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.762 kcal (2) G-P(sol) polarization free energy of solvation -12.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds