Wall clock time and date at job start Tue Mar 9 2021 12:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50699 * 109.47249 * 239.99737 * 2 1 3 5 5 C 1.34456 * 126.48419 * 104.69164 * 4 2 1 6 6 N 1.36558 * 109.99092 * 179.89361 * 5 4 2 7 7 C 1.37834 * 109.85849 * 0.38183 * 6 5 4 8 8 C 1.38639 * 133.38281 * 179.68417 * 7 6 5 9 9 C 1.39318 * 119.66908 * 180.02562 * 8 7 6 10 10 C 1.47573 * 119.83668 * 180.02562 * 9 8 7 11 11 O 1.21586 * 119.99812 * 0.03017 * 10 9 8 12 12 N 1.34771 * 120.00478 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00378 * 180.02562 * 12 10 9 14 14 H 1.09001 * 112.84702 * 336.19755 * 13 12 10 15 15 C 1.53776 * 113.61733 * 107.50684 * 13 12 10 16 16 C 1.53776 * 87.08340 * 89.11456 * 15 13 12 17 17 H 1.08997 * 113.69424 * 270.86993 * 16 15 13 18 18 C 1.53006 * 113.61471 * 139.98432 * 16 15 13 19 19 N 1.46495 * 109.47116 * 87.50233 * 18 16 15 20 20 C 1.34436 * 126.81816 * 124.71388 * 19 18 16 21 21 N 1.30835 * 108.07241 * 179.89275 * 20 19 18 22 22 C 1.33239 * 109.83045 * 0.37606 * 21 20 19 23 23 N 1.30718 * 108.94888 * 359.76665 * 22 21 20 24 24 C 1.53779 * 87.08163 * 25.43487 * 16 15 13 25 25 C 1.40205 * 120.33419 * 0.04618 * 9 8 7 26 26 C 1.36230 * 120.37772 * 359.97438 * 25 9 8 27 27 C 1.39874 * 119.96025 * 359.97438 * 26 25 9 28 28 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 29 29 H 1.09004 * 109.47449 * 120.00278 * 2 1 3 30 30 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 31 31 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 32 32 H 1.08005 * 125.00040 * 0.03590 * 5 4 2 33 33 H 0.96995 * 125.07330 * 180.19663 * 6 5 4 34 34 H 1.08000 * 120.16718 * 0.03430 * 8 7 6 35 35 H 0.97007 * 119.99751 * 0.02562 * 12 10 9 36 36 H 1.08999 * 113.61971 * 203.66574 * 15 13 12 37 37 H 1.09000 * 113.61523 * 334.56747 * 15 13 12 38 38 H 1.09003 * 109.47096 * 207.50684 * 18 16 15 39 39 H 1.09003 * 109.46619 * 327.50385 * 18 16 15 40 40 H 1.07991 * 125.96232 * 0.03318 * 20 19 18 41 41 H 1.08004 * 125.52876 * 179.72440 * 22 21 20 42 42 H 1.09000 * 113.61536 * 220.01871 * 24 16 15 43 43 H 1.09002 * 113.69029 * 89.12604 * 24 16 15 44 44 H 1.08002 * 119.81025 * 179.97438 * 25 9 8 45 45 H 1.08003 * 120.02187 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.4563 -0.1361 -2.3269 6 7 2.8022 -1.0947 -3.2359 7 6 2.4938 -2.3432 -2.7400 8 6 2.6285 -3.6278 -3.2437 9 6 2.2112 -4.7154 -2.4796 10 6 2.3534 -6.0844 -3.0119 11 8 2.8343 -6.2610 -4.1146 12 7 1.9503 -7.1390 -2.2758 13 6 2.0920 -8.4981 -2.8040 14 1 2.1324 -8.5268 -3.8929 15 6 3.2055 -9.3109 -2.1227 16 6 2.1455 -9.7603 -1.1033 17 1 2.0539 -9.0953 -0.2446 18 6 2.2644 -11.2326 -0.7043 19 7 3.1955 -11.3604 0.4195 20 6 2.9491 -11.9376 1.6083 21 7 4.0337 -11.8496 2.3348 22 6 4.9864 -11.2183 1.6500 23 7 4.5210 -10.8988 0.4711 24 6 1.0967 -9.5015 -2.1978 25 6 1.6564 -4.5159 -1.2075 26 6 1.5200 -3.2569 -0.7052 27 6 1.9353 -2.1549 -1.4599 28 1 -0.3934 0.4417 -0.7651 29 1 1.7923 -0.5139 0.8900 30 1 1.5879 2.4585 -1.2243 31 1 1.5615 2.4679 1.2085 32 1 2.5873 0.9268 -2.4670 33 1 3.2026 -0.9225 -4.1024 34 1 3.0550 -3.7846 -4.2235 35 1 1.5664 -6.9981 -1.3962 36 1 3.5919 -10.1235 -2.7379 37 1 3.9936 -8.6946 -1.6901 38 1 1.2850 -11.6094 -0.4093 39 1 2.6357 -11.8097 -1.5512 40 1 2.0191 -12.3962 1.9101 41 1 5.9818 -11.0045 2.0107 42 1 0.1825 -9.0391 -1.8258 43 1 0.9055 -10.3655 -2.8342 44 1 1.3353 -5.3651 -0.6226 45 1 1.0915 -3.1098 0.2752 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_12335838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:11 Heat of formation + Delta-G solvation = 120.445696 kcal Electronic energy + Delta-G solvation = -29751.503172 eV Core-core repulsion = 25546.161694 eV Total energy + Delta-G solvation = -4205.341479 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.95481 -42.49557 -41.36965 -39.68301 -37.97915 -37.52242 -35.44958 -33.94323 -33.28624 -32.13200 -30.77224 -30.68693 -28.94593 -26.71817 -26.52056 -25.34100 -24.08150 -23.67642 -22.83353 -22.37607 -21.71577 -20.83696 -20.34755 -19.48804 -18.51969 -18.15742 -17.64932 -17.23218 -17.00528 -16.75805 -16.37343 -16.15332 -16.03359 -15.84601 -15.66277 -15.30504 -15.23435 -15.09418 -14.85034 -14.79591 -14.66444 -14.43805 -14.00805 -13.90465 -13.49290 -13.14143 -13.09973 -12.81345 -12.67083 -12.50730 -12.24122 -12.18930 -11.78415 -11.72596 -11.26021 -11.18115 -10.94674 -10.81794 -10.76520 -10.53655 -10.46245 -10.16901 -9.39735 -8.82555 -4.83912 -0.35922 0.34042 0.73718 1.36310 1.38905 1.48778 1.63454 1.84354 1.86358 2.03795 2.03985 2.21450 2.82918 3.32248 3.45502 3.54373 3.55972 3.56243 3.65554 3.67203 3.79187 3.84246 3.88821 3.98447 4.08022 4.14428 4.24013 4.27174 4.43798 4.46412 4.51675 4.57475 4.60314 4.68000 4.76439 4.77531 4.85475 4.95112 4.99212 5.04690 5.13865 5.18255 5.34928 5.38235 5.45972 5.48533 5.56617 5.59027 5.95109 5.98271 6.40410 6.49719 6.61465 7.08676 7.16614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.049 4.049 3 Si 0.773 3.227 4 C -0.224 4.224 5 C 0.091 3.909 6 N -0.576 5.576 7 C 0.068 3.932 8 C -0.066 4.066 9 C -0.137 4.137 10 C 0.563 3.437 11 O -0.581 6.581 12 N -0.695 5.695 13 C 0.107 3.893 14 H 0.087 0.913 15 C -0.137 4.137 16 C -0.110 4.110 17 H 0.090 0.910 18 C 0.131 3.869 19 N -0.378 5.378 20 C 0.256 3.744 21 N -0.585 5.585 22 C 0.182 3.818 23 N -0.344 5.344 24 C -0.114 4.114 25 C -0.108 4.108 26 C -0.083 4.083 27 C -0.079 4.079 28 H 0.384 0.616 29 H 0.113 0.887 30 H -0.267 1.267 31 H -0.308 1.308 32 H 0.208 0.792 33 H 0.434 0.566 34 H 0.128 0.872 35 H 0.413 0.587 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.144 0.856 39 H 0.096 0.904 40 H 0.259 0.741 41 H 0.228 0.772 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.149 0.851 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.322 1.187 0.058 3.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.158 4.158 3 Si 0.677 3.323 4 C -0.232 4.232 5 C -0.038 4.038 6 N -0.180 5.180 7 C -0.039 4.039 8 C -0.088 4.088 9 C -0.142 4.142 10 C 0.352 3.648 11 O -0.463 6.463 12 N -0.347 5.347 13 C 0.001 3.999 14 H 0.105 0.895 15 C -0.176 4.176 16 C -0.129 4.129 17 H 0.108 0.892 18 C 0.010 3.990 19 N -0.168 5.168 20 C -0.040 4.040 21 N -0.313 5.313 22 C -0.120 4.120 23 N -0.172 5.172 24 C -0.153 4.153 25 C -0.128 4.128 26 C -0.101 4.101 27 C -0.084 4.084 28 H 0.233 0.767 29 H 0.131 0.869 30 H -0.193 1.193 31 H -0.237 1.237 32 H 0.224 0.776 33 H 0.275 0.725 34 H 0.146 0.854 35 H 0.251 0.749 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.162 0.838 39 H 0.114 0.886 40 H 0.275 0.725 41 H 0.244 0.756 42 H 0.113 0.887 43 H 0.140 0.860 44 H 0.166 0.834 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.656 1.837 -0.607 3.286 hybrid contribution -0.871 -0.096 -0.573 1.047 sum -3.528 1.741 -1.180 4.107 Atomic orbital electron populations 1.86572 1.19121 1.80482 1.49934 1.24566 0.82747 1.11380 0.97063 0.94129 0.90012 0.71083 0.77049 1.20762 1.12030 0.91409 0.98963 1.22302 0.97587 0.95602 0.88352 1.41801 1.54022 1.03240 1.18894 1.18112 1.03832 0.86794 0.95187 1.20127 0.99776 0.88829 1.00054 1.19448 1.06270 0.91712 0.96722 1.18384 0.76774 0.85444 0.84159 1.90761 1.46536 1.86816 1.22142 1.45467 1.63115 1.05087 1.20987 1.21968 0.98218 0.80782 0.98902 0.89502 1.23392 0.96595 0.99717 0.97907 1.22771 0.97253 0.95431 0.97472 0.89220 1.22260 0.92235 0.97487 0.86986 1.50775 1.09567 1.42199 1.14300 1.26904 1.00283 0.94608 0.82226 1.70542 1.01437 1.24513 1.34842 1.26421 1.01190 0.95869 0.88542 1.78028 0.92990 1.24008 1.22184 1.23291 0.96612 0.98975 0.96373 1.20864 0.99759 0.98091 0.94041 1.20400 0.98955 0.90614 1.00152 1.19548 1.00913 0.94207 0.93774 0.76724 0.86940 1.19324 1.23670 0.77562 0.72539 0.85374 0.74920 0.88897 0.93439 0.83792 0.88565 0.72540 0.75575 0.88719 0.86045 0.83375 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.20 12.88 -148.98 -1.92 -3.12 16 2 C -0.05 0.07 3.06 71.24 0.22 0.28 16 3 Si 0.77 -3.57 30.83 68.60 2.11 -1.46 16 4 C -0.22 0.09 5.57 -18.64 -0.10 -0.01 16 5 C 0.09 -0.42 10.43 83.09 0.87 0.45 16 6 N -0.58 1.66 6.07 -187.71 -1.14 0.52 16 7 C 0.07 0.23 7.26 38.95 0.28 0.51 16 8 C -0.07 -0.40 9.61 22.63 0.22 -0.18 16 9 C -0.14 -0.76 5.87 -20.08 -0.12 -0.88 16 10 C 0.56 4.42 7.76 86.71 0.67 5.09 16 11 O -0.58 -9.21 15.91 -3.99 -0.06 -9.28 16 12 N -0.70 -0.47 5.21 -443.17 -2.31 -2.77 16 13 C 0.11 -0.08 4.32 45.52 0.20 0.12 16 14 H 0.09 0.32 7.46 -2.39 -0.02 0.31 16 15 C -0.14 0.05 7.43 31.12 0.23 0.28 16 16 C -0.11 0.72 3.73 -10.27 -0.04 0.68 16 17 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 18 C 0.13 -1.11 6.39 86.38 0.55 -0.55 16 19 N -0.38 0.31 3.69 -352.05 -1.30 -0.99 16 20 C 0.26 -0.40 12.63 180.36 2.28 1.87 16 21 N -0.59 -3.39 11.19 -204.00 -2.28 -5.68 16 22 C 0.18 1.02 13.03 180.76 2.36 3.38 16 23 N -0.34 -2.09 12.57 -61.24 -0.77 -2.86 16 24 C -0.11 1.03 7.39 31.12 0.23 1.26 16 25 C -0.11 -0.13 9.46 22.28 0.21 0.08 16 26 C -0.08 -0.20 10.03 22.20 0.22 0.02 16 27 C -0.08 -0.29 6.35 -20.14 -0.13 -0.42 16 28 H 0.38 -1.41 8.70 -74.06 -0.64 -2.06 16 29 H 0.11 -0.17 7.96 -2.38 -0.02 -0.19 16 30 H -0.27 0.89 6.99 99.48 0.70 1.59 16 31 H -0.31 -1.33 7.11 99.48 0.71 -0.62 16 32 H 0.21 -2.38 6.27 -2.91 -0.02 -2.40 16 33 H 0.43 -3.61 8.96 -92.71 -0.83 -4.44 16 34 H 0.13 0.85 7.62 -2.91 -0.02 0.83 16 35 H 0.41 -1.93 6.69 -92.70 -0.62 -2.55 16 36 H 0.09 -0.04 7.90 -2.39 -0.02 -0.06 16 37 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.14 -2.33 8.09 -2.39 -0.02 -2.35 16 39 H 0.10 -0.83 7.84 -2.39 -0.02 -0.84 16 40 H 0.26 -3.10 8.06 -2.92 -0.02 -3.12 16 41 H 0.23 0.09 8.06 -2.91 -0.02 0.07 16 42 H 0.09 -1.04 8.14 -2.39 -0.02 -1.06 16 43 H 0.12 -1.49 8.10 -2.39 -0.02 -1.51 16 44 H 0.15 -0.75 6.36 -2.91 -0.02 -0.77 16 45 H 0.14 -0.01 8.06 -2.91 -0.02 -0.03 16 Total: 0.00 -32.55 383.31 -0.52 -33.07 By element: Atomic # 1 Polarization: -18.42 SS G_CDS: -0.99 Total: -19.41 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 8.15 Total: 11.97 kcal Atomic # 7 Polarization: -3.98 SS G_CDS: -7.80 Total: -11.78 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -1.98 Total: -12.40 kcal Atomic # 14 Polarization: -3.57 SS G_CDS: 2.11 Total: -1.46 kcal Total: -32.55 -0.52 -33.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_12335838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.515 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds