Wall clock time and date at job start Tue Mar 9 2021 12:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86298 * 109.46973 * 2 1 4 4 C 1.50698 * 109.46745 * 119.99967 * 2 1 3 5 5 C 1.31115 * 118.54682 * 249.99593 * 4 2 1 6 6 N 1.38927 * 121.84635 * 180.40502 * 5 4 2 7 7 C 1.47027 * 118.88522 * 346.71509 * 6 5 4 8 8 C 1.50703 * 109.81940 * 163.20336 * 7 6 5 9 9 O 1.21282 * 120.00078 * 341.78469 * 8 7 6 10 10 N 1.34773 * 119.99744 * 161.79242 * 8 7 6 11 11 C 1.46502 * 119.99750 * 179.97438 * 10 8 7 12 12 H 1.09000 * 112.85163 * 23.80578 * 11 10 8 13 13 C 1.53783 * 113.61299 * 154.99894 * 11 10 8 14 14 C 1.53774 * 87.08342 * 89.11733 * 13 11 10 15 15 H 1.09003 * 113.61413 * 270.80128 * 14 13 11 16 16 C 1.53005 * 113.62060 * 139.97914 * 14 13 11 17 17 N 1.46491 * 109.47478 * 174.99734 * 16 14 13 18 18 C 1.34430 * 126.82364 * 124.71105 * 17 16 14 19 19 N 1.30834 * 108.08005 * 179.89348 * 18 17 16 20 20 C 1.33236 * 109.82799 * 0.38526 * 19 18 17 21 21 N 1.30717 * 108.94850 * 359.75798 * 20 19 18 22 22 C 1.53782 * 113.61398 * 252.49434 * 11 10 8 23 23 C 1.53537 * 107.66105 * 43.66155 * 7 6 5 24 24 C 1.50630 * 118.46961 * 70.08721 * 4 2 1 25 25 H 0.96705 * 113.99463 * 60.00280 * 1 2 3 26 26 H 1.08994 * 109.46974 * 239.99833 * 2 1 3 27 27 H 1.48503 * 109.99887 * 60.00275 * 3 2 1 28 28 H 1.48501 * 109.99677 * 181.31477 * 3 2 1 29 29 H 1.07998 * 119.07771 * 0.43908 * 5 4 2 30 30 H 0.97003 * 120.55640 * 166.68829 * 6 5 4 31 31 H 1.09004 * 109.86975 * 284.08805 * 7 6 5 32 32 H 0.97000 * 120.00428 * 359.97438 * 10 8 7 33 33 H 1.09004 * 113.61290 * 203.66502 * 13 11 10 34 34 H 1.08999 * 113.61515 * 334.56300 * 13 11 10 35 35 H 1.08993 * 109.47042 * 295.00198 * 16 14 13 36 36 H 1.09009 * 109.46660 * 54.99717 * 16 14 13 37 37 H 1.08002 * 125.95849 * 0.03611 * 18 17 16 38 38 H 1.08002 * 125.52784 * 179.72551 * 20 19 18 39 39 H 1.08997 * 113.61449 * 25.43281 * 22 11 10 40 40 H 1.08999 * 113.61447 * 156.33899 * 22 11 10 41 41 H 1.09002 * 109.62272 * 58.77362 * 23 7 6 42 42 H 1.09001 * 109.62157 * 179.14540 * 23 7 6 43 43 H 1.08996 * 109.57584 * 39.73121 * 24 4 2 44 44 H 1.09000 * 109.30408 * 280.11028 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.5116 -0.0029 2.1695 6 7 3.0070 -0.5882 3.3279 7 6 2.6232 -1.9717 3.6447 8 6 3.5627 -2.5388 4.6776 9 8 4.6385 -2.0137 4.8722 10 7 3.2074 -3.6296 5.3850 11 6 4.1210 -4.1812 6.3887 12 1 4.8285 -3.4438 6.7679 13 6 3.4113 -4.9797 7.4949 14 6 3.5688 -6.2163 6.5945 15 1 2.7375 -6.3631 5.9049 16 6 3.9377 -7.4889 7.3597 17 7 3.9473 -8.6275 6.4381 18 6 4.9636 -9.4805 6.2218 19 7 4.5759 -10.3563 5.3305 20 6 3.3269 -10.0911 4.9498 21 7 2.8987 -9.0413 5.6003 22 6 4.7772 -5.5052 5.9628 23 6 2.7186 -2.7899 2.3490 24 6 1.7454 -2.2022 1.3245 25 1 -0.3933 0.4417 -0.7651 26 1 1.7923 -0.5138 -0.8899 27 1 1.5615 2.4678 1.2086 28 1 3.5346 1.7702 -0.0320 29 1 2.6066 1.0650 2.0390 30 1 3.5965 -0.0926 3.9177 31 1 1.6010 -1.9953 4.0225 32 1 2.3469 -4.0494 5.2296 33 1 3.9798 -5.0402 8.4230 34 1 2.3744 -4.6826 7.6512 35 1 4.9264 -7.3723 7.8034 36 1 3.2045 -7.6648 8.1470 37 1 5.9305 -9.4497 6.7020 38 1 2.7603 -10.6522 4.2214 39 1 4.8429 -5.6323 4.8823 40 1 5.7191 -5.7093 6.4721 41 1 3.7351 -2.7403 1.9588 42 1 2.4544 -3.8279 2.5513 43 1 1.9299 -2.6553 0.3505 44 1 0.7226 -2.4192 1.6326 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_15413834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:15 Heat of formation + Delta-G solvation = 78.602905 kcal Electronic energy + Delta-G solvation = -26618.311561 eV Core-core repulsion = 22768.522586 eV Total energy + Delta-G solvation = -3849.788975 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.99229 -41.76209 -40.38004 -39.16938 -37.36770 -35.52194 -34.18192 -33.42568 -32.94236 -32.16188 -29.24973 -27.57208 -26.78057 -25.55969 -24.63531 -23.69884 -22.93981 -22.44432 -22.08290 -20.30814 -19.36790 -19.21410 -18.32192 -18.23998 -17.73182 -17.25647 -16.89509 -16.44798 -16.09427 -15.97538 -15.77072 -15.48231 -15.20944 -15.08980 -14.98495 -14.75372 -14.52285 -14.20487 -13.86275 -13.81809 -13.75632 -13.50471 -13.31522 -13.00542 -12.80154 -12.50184 -12.18197 -11.99727 -11.79977 -11.76783 -11.47136 -11.46571 -11.05064 -10.97427 -10.79070 -10.52780 -10.22961 -10.10904 -8.65838 -4.93877 0.69377 1.12533 1.27830 1.36240 1.44478 1.62600 1.72050 1.95480 2.00756 2.44115 3.34082 3.36206 3.44301 3.45984 3.51024 3.53464 3.61782 3.74810 3.82276 3.91537 3.93975 4.11640 4.15057 4.17740 4.25911 4.46283 4.49210 4.50786 4.54467 4.62388 4.64508 4.70807 4.77031 4.87492 4.91845 4.98371 5.06951 5.10456 5.11859 5.30663 5.39650 5.45694 5.46752 5.93744 6.05203 6.28613 6.58655 6.94943 7.01655 7.12946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.567 6.567 2 C -0.053 4.053 3 Si 0.755 3.245 4 C -0.243 4.243 5 C 0.117 3.883 6 N -0.739 5.739 7 C 0.138 3.862 8 C 0.518 3.482 9 O -0.571 6.571 10 N -0.695 5.695 11 C 0.110 3.890 12 H 0.090 0.910 13 C -0.118 4.118 14 C -0.115 4.115 15 H 0.089 0.911 16 C 0.131 3.869 17 N -0.376 5.376 18 C 0.255 3.745 19 N -0.586 5.586 20 C 0.186 3.814 21 N -0.346 5.346 22 C -0.144 4.144 23 C -0.121 4.121 24 C -0.051 4.051 25 H 0.397 0.603 26 H 0.080 0.920 27 H -0.297 1.297 28 H -0.298 1.298 29 H 0.119 0.881 30 H 0.405 0.595 31 H 0.109 0.891 32 H 0.416 0.584 33 H 0.123 0.877 34 H 0.086 0.914 35 H 0.137 0.863 36 H 0.100 0.900 37 H 0.255 0.745 38 H 0.231 0.769 39 H 0.048 0.952 40 H 0.109 0.891 41 H 0.057 0.943 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 -0.262 1.546 2.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.164 4.164 3 Si 0.663 3.337 4 C -0.254 4.254 5 C -0.003 4.003 6 N -0.372 5.372 7 C 0.029 3.971 8 C 0.304 3.696 9 O -0.450 6.450 10 N -0.346 5.346 11 C 0.004 3.996 12 H 0.108 0.892 13 C -0.156 4.156 14 C -0.134 4.134 15 H 0.107 0.893 16 C 0.011 3.989 17 N -0.167 5.167 18 C -0.042 4.042 19 N -0.314 5.314 20 C -0.117 4.117 21 N -0.175 5.175 22 C -0.182 4.182 23 C -0.160 4.160 24 C -0.088 4.088 25 H 0.247 0.753 26 H 0.098 0.902 27 H -0.225 1.225 28 H -0.226 1.226 29 H 0.136 0.864 30 H 0.241 0.759 31 H 0.126 0.874 32 H 0.253 0.747 33 H 0.141 0.859 34 H 0.105 0.895 35 H 0.155 0.845 36 H 0.119 0.881 37 H 0.271 0.729 38 H 0.247 0.753 39 H 0.067 0.933 40 H 0.128 0.872 41 H 0.076 0.924 42 H 0.119 0.881 43 H 0.100 0.900 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.125 0.371 2.536 2.799 hybrid contribution 0.242 -0.259 0.319 0.477 sum -0.883 0.111 2.854 2.990 Atomic orbital electron populations 1.86461 1.17982 1.82182 1.50940 1.24535 0.85233 1.09065 0.97578 0.94648 0.77192 0.77007 0.84859 1.20581 1.11404 0.96654 0.96727 1.20324 0.97372 0.95576 0.87014 1.44295 1.55070 1.13120 1.24738 1.21108 0.97802 0.83516 0.94661 1.20732 0.86987 0.80438 0.81438 1.90715 1.24880 1.61330 1.68060 1.45535 1.21638 1.28893 1.38569 1.21928 0.93005 0.94966 0.89670 0.89164 1.23305 1.02713 0.92200 0.97385 1.22823 0.98910 0.92963 0.98678 0.89299 1.22255 1.06393 0.80735 0.89541 1.50744 1.09653 1.24533 1.31737 1.26837 0.96516 0.86355 0.94446 1.70545 1.14108 1.29301 1.17452 1.26444 0.91558 0.93965 0.99733 1.77930 1.12486 1.17243 1.09829 1.23541 0.98721 0.95213 1.00746 1.21851 1.00656 0.99755 0.93750 1.20069 0.98909 0.90478 0.99317 0.75314 0.90164 1.22538 1.22586 0.86375 0.75878 0.87390 0.74703 0.85854 0.89500 0.84493 0.88141 0.72897 0.75267 0.93295 0.87249 0.92367 0.88116 0.89980 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -0.58 12.86 -148.98 -1.92 -2.50 16 2 C -0.05 -0.06 2.80 71.24 0.20 0.14 16 3 Si 0.75 0.16 29.92 68.60 2.05 2.21 16 4 C -0.24 -1.27 5.41 -16.63 -0.09 -1.36 16 5 C 0.12 0.80 9.61 83.41 0.80 1.61 16 6 N -0.74 -4.35 5.47 -329.01 -1.80 -6.15 16 7 C 0.14 0.23 3.36 44.33 0.15 0.38 16 8 C 0.52 1.74 7.10 87.66 0.62 2.36 16 9 O -0.57 -6.68 15.66 -3.04 -0.05 -6.73 16 10 N -0.70 2.13 5.26 -440.03 -2.32 -0.18 16 11 C 0.11 -0.46 4.32 45.52 0.20 -0.26 16 12 H 0.09 0.00 7.46 -2.39 -0.02 -0.02 16 13 C -0.12 1.20 7.39 31.12 0.23 1.43 16 14 C -0.11 0.90 3.75 -10.27 -0.04 0.86 16 15 H 0.09 -0.34 8.00 -2.39 -0.02 -0.36 16 16 C 0.13 -1.21 6.39 86.38 0.55 -0.66 16 17 N -0.38 0.56 3.69 -352.07 -1.30 -0.74 16 18 C 0.25 -0.38 12.63 180.36 2.28 1.90 16 19 N -0.59 -3.22 11.19 -204.00 -2.28 -5.50 16 20 C 0.19 0.83 13.03 180.77 2.36 3.18 16 21 N -0.35 -1.57 12.45 -61.24 -0.76 -2.34 16 22 C -0.14 0.76 7.43 31.12 0.23 0.99 16 23 C -0.12 -0.08 5.46 30.79 0.17 0.08 16 24 C -0.05 -0.10 5.89 29.84 0.18 0.08 16 25 H 0.40 -3.57 8.74 -74.05 -0.65 -4.22 16 26 H 0.08 -0.15 7.96 -2.39 -0.02 -0.17 16 27 H -0.30 -2.11 6.88 99.48 0.68 -1.43 16 28 H -0.30 -2.03 7.11 99.48 0.71 -1.32 16 29 H 0.12 0.84 4.34 -2.91 -0.01 0.83 16 30 H 0.41 2.68 8.08 -92.71 -0.75 1.93 16 31 H 0.11 -0.18 8.14 -2.38 -0.02 -0.20 16 32 H 0.42 -3.23 8.70 -92.71 -0.81 -4.04 16 33 H 0.12 -1.71 8.10 -2.39 -0.02 -1.73 16 34 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 35 H 0.14 -2.15 7.79 -2.39 -0.02 -2.17 16 36 H 0.10 -1.02 8.14 -2.38 -0.02 -1.04 16 37 H 0.26 -2.86 8.06 -2.91 -0.02 -2.89 16 38 H 0.23 -0.27 8.06 -2.91 -0.02 -0.30 16 39 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.11 -0.90 7.90 -2.39 -0.02 -0.92 16 41 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 43 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 44 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 Total: 0.00 -28.50 363.38 -1.68 -30.18 By element: Atomic # 1 Polarization: -17.85 SS G_CDS: -1.14 Total: -18.99 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 7.83 Total: 10.73 kcal Atomic # 7 Polarization: -6.45 SS G_CDS: -8.46 Total: -14.91 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -1.96 Total: -9.22 kcal Atomic # 14 Polarization: 0.16 SS G_CDS: 2.05 Total: 2.21 kcal Total: -28.50 -1.68 -30.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_15413834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.780 kcal (2) G-P(sol) polarization free energy of solvation -28.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds