Wall clock time and date at job start Tue Mar 9 2021 12:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99639 * 2 1 4 4 C 1.50703 * 109.47109 * 293.95446 * 3 2 1 5 5 O 1.21282 * 120.00082 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99978 * 180.02562 * 4 3 2 7 7 C 1.46496 * 119.99846 * 180.02562 * 6 4 3 8 8 H 1.09000 * 112.85246 * 25.33074 * 7 6 4 9 9 C 1.53790 * 113.61266 * 156.52718 * 7 6 4 10 10 C 1.53779 * 87.07820 * 89.11631 * 9 7 6 11 11 H 1.08998 * 113.61250 * 270.79581 * 10 9 7 12 12 C 1.53002 * 113.61245 * 139.98351 * 10 9 7 13 13 N 1.46501 * 109.46941 * 174.99487 * 12 10 9 14 14 C 1.34437 * 126.81789 * 125.00043 * 13 12 10 15 15 N 1.30833 * 108.07405 * 179.97438 * 14 13 12 16 16 C 1.33242 * 109.82848 * 0.02562 * 15 14 13 17 17 N 1.30708 * 108.94714 * 359.75010 * 16 15 14 18 18 C 1.53779 * 113.61359 * 254.13204 * 7 6 4 19 19 C 1.39669 * 111.00315 * 123.95279 * 2 1 3 20 20 C 1.38891 * 120.07544 * 116.04613 * 19 2 1 21 21 C 1.50707 * 120.03565 * 0.02562 * 20 19 2 22 22 O 1.42903 * 109.46903 * 284.99807 * 21 20 19 23 23 Si 1.86301 * 109.47072 * 164.99795 * 21 20 19 24 24 C 1.38118 * 119.92849 * 179.97438 * 20 19 2 25 25 C 1.38272 * 120.07589 * 0.02607 * 24 20 19 26 26 C 1.50699 * 119.92879 * 179.97438 * 25 24 20 27 27 F 1.39901 * 109.47011 * 89.99550 * 26 25 24 28 28 F 1.39896 * 109.47080 * 209.99690 * 26 25 24 29 29 F 1.39896 * 109.47009 * 329.99720 * 26 25 24 30 30 C 1.38314 * 120.14434 * 359.97238 * 25 24 20 31 31 C 1.38080 * 120.07352 * 359.75106 * 30 25 24 32 32 H 1.08998 * 109.47452 * 60.00398 * 1 2 3 33 33 H 1.09000 * 109.46497 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46901 * 299.99804 * 1 2 3 35 35 H 1.08992 * 109.47459 * 53.95364 * 3 2 1 36 36 H 1.09004 * 109.47040 * 173.95515 * 3 2 1 37 37 H 0.97002 * 119.99767 * 359.97438 * 6 4 3 38 38 H 1.08997 * 113.61164 * 203.66564 * 9 7 6 39 39 H 1.08998 * 113.61148 * 334.48268 * 9 7 6 40 40 H 1.09002 * 109.47011 * 294.99839 * 12 10 9 41 41 H 1.09003 * 109.47302 * 54.99896 * 12 10 9 42 42 H 1.07993 * 125.96249 * 359.92526 * 14 13 12 43 43 H 1.08001 * 125.52394 * 179.97438 * 16 15 14 44 44 H 1.08994 * 113.61719 * 25.43494 * 18 7 6 45 45 H 1.09006 * 113.61510 * 156.33471 * 18 7 6 46 46 H 1.08995 * 109.47181 * 44.99426 * 21 20 19 47 47 H 0.96698 * 113.99710 * 59.99530 * 22 21 20 48 48 H 1.48492 * 110.00047 * 300.00069 * 23 21 20 49 49 H 1.48502 * 109.99898 * 61.31549 * 23 21 20 50 50 H 1.07997 * 119.96854 * 179.97438 * 24 20 19 51 51 H 1.08000 * 119.96171 * 180.02562 * 30 25 24 52 52 H 1.08008 * 120.03543 * 180.27420 * 31 30 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 8 1.0054 1.4454 -2.1411 6 7 2.0187 3.3199 -1.5237 7 6 1.6696 3.9769 -2.7857 8 1 0.7803 3.5527 -3.2520 9 6 1.6449 5.5119 -2.6948 10 6 3.1375 5.4793 -3.0631 11 1 3.7986 5.4026 -2.1999 12 6 3.5537 6.5864 -4.0336 13 7 5.0051 6.5450 -4.2283 14 6 5.6585 6.4484 -5.3992 15 7 6.9426 6.4428 -5.1483 16 6 7.1468 6.5333 -3.8347 17 7 5.9905 6.6035 -3.2293 18 6 2.8577 4.1292 -3.7501 19 6 1.9696 -0.7282 1.0816 20 6 2.7118 -1.8812 0.8606 21 6 2.9787 -2.3483 -0.5472 22 8 1.7919 -2.9320 -1.0885 23 14 4.3435 -3.6163 -0.5326 24 6 3.2058 -2.5988 1.9324 25 6 2.9618 -2.1707 3.2243 26 6 3.5020 -2.9565 4.3913 27 9 4.7755 -2.4821 4.7235 28 9 2.6478 -2.8075 5.4892 29 9 3.5842 -4.3093 4.0446 30 6 2.2232 -1.0230 3.4480 31 6 1.7312 -0.2978 2.3808 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.5611 1.9274 0.8308 36 1 3.0797 1.3445 0.1082 37 1 2.5240 3.8011 -0.8499 38 1 1.0186 5.9840 -3.4518 39 1 1.4497 5.8867 -1.6901 40 1 3.0542 6.4371 -4.9909 41 1 3.2697 7.5554 -3.6229 42 1 5.2030 6.3855 -6.3763 43 1 8.1114 6.5500 -3.3493 44 1 3.6425 3.3886 -3.5966 45 1 2.5625 4.2240 -4.7952 46 1 3.2784 -1.4989 -1.1611 47 1 1.0383 -2.3273 -1.1264 48 1 5.5832 -3.0216 0.0282 49 1 3.9345 -4.7934 0.2752 50 1 3.7826 -3.4956 1.7613 51 1 2.0347 -0.6911 4.4583 52 1 1.1582 0.6008 2.5561 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_6406254.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:32 Heat of formation + Delta-G solvation = -39.885316 kcal Electronic energy + Delta-G solvation = -41543.236838 eV Core-core repulsion = 35712.420382 eV Total energy + Delta-G solvation = -5830.816456 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 426.167 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -51.39781 -48.92253 -48.85927 -42.97244 -41.92040 -41.12932 -39.63669 -37.70651 -37.59337 -35.38359 -33.89963 -33.13674 -32.25365 -32.14691 -29.89533 -28.66195 -27.72593 -27.02398 -26.71317 -25.34186 -24.48487 -23.56374 -22.92184 -22.42334 -22.20206 -21.63623 -20.17368 -19.75276 -19.70120 -19.59028 -18.65639 -18.29664 -18.19368 -17.67900 -17.20105 -17.03935 -16.78243 -16.50636 -16.28664 -16.06232 -15.93640 -15.78911 -15.77695 -15.57012 -15.42361 -15.28439 -15.12567 -15.05621 -15.02791 -15.01642 -14.99407 -14.77450 -14.68569 -14.13149 -14.01599 -13.83556 -13.72754 -13.46577 -13.36933 -13.29588 -13.05288 -12.88295 -12.77892 -12.60362 -12.33415 -12.12511 -11.71340 -11.47540 -11.39624 -11.10978 -10.95707 -10.95068 -10.77375 -10.49014 -10.39323 -10.22638 -10.07358 -9.72217 -4.92366 -0.51893 -0.14860 0.71127 1.27999 1.40447 1.46389 1.53479 1.55142 1.84072 1.85326 2.02260 2.03368 2.45563 2.63286 2.75689 3.16265 3.38014 3.40840 3.43450 3.48321 3.51379 3.55399 3.60768 3.77673 3.81122 3.91464 3.94158 3.95864 4.01557 4.09342 4.17234 4.21080 4.22039 4.30653 4.38950 4.43948 4.51621 4.52054 4.54554 4.70208 4.76954 4.77609 4.82315 4.85219 4.94446 4.98836 5.03429 5.05745 5.20672 5.24034 5.32670 5.46997 5.50374 5.60873 5.95931 5.98412 6.48604 6.57736 7.14618 7.21079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.502 5.502 3 C 0.038 3.962 4 C 0.518 3.482 5 O -0.554 6.554 6 N -0.706 5.706 7 C 0.117 3.883 8 H 0.091 0.909 9 C -0.118 4.118 10 C -0.115 4.115 11 H 0.086 0.914 12 C 0.130 3.870 13 N -0.376 5.376 14 C 0.255 3.745 15 N -0.586 5.586 16 C 0.185 3.815 17 N -0.347 5.347 18 C -0.145 4.145 19 C 0.135 3.865 20 C -0.099 4.099 21 C -0.070 4.070 22 O -0.543 6.543 23 Si 0.787 3.213 24 C -0.084 4.084 25 C -0.187 4.187 26 C 0.507 3.493 27 F -0.179 7.179 28 F -0.173 7.173 29 F -0.185 7.185 30 C -0.052 4.052 31 C -0.134 4.134 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.412 0.588 38 H 0.120 0.880 39 H 0.086 0.914 40 H 0.137 0.863 41 H 0.099 0.901 42 H 0.256 0.744 43 H 0.230 0.770 44 H 0.046 0.954 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.372 0.628 48 H -0.263 1.263 49 H -0.286 1.286 50 H 0.126 0.874 51 H 0.161 0.839 52 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.406 8.184 -1.974 9.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.223 5.223 3 C -0.091 4.091 4 C 0.305 3.695 5 O -0.431 6.431 6 N -0.358 5.358 7 C 0.012 3.988 8 H 0.109 0.891 9 C -0.157 4.157 10 C -0.134 4.134 11 H 0.105 0.895 12 C 0.010 3.990 13 N -0.166 5.166 14 C -0.041 4.041 15 N -0.314 5.314 16 C -0.118 4.118 17 N -0.175 5.175 18 C -0.184 4.184 19 C 0.041 3.959 20 C -0.101 4.101 21 C -0.179 4.179 22 O -0.350 6.350 23 Si 0.689 3.311 24 C -0.102 4.102 25 C -0.189 4.189 26 C 0.453 3.547 27 F -0.160 7.160 28 F -0.154 7.154 29 F -0.167 7.167 30 C -0.071 4.071 31 C -0.154 4.154 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.119 0.881 36 H 0.134 0.866 37 H 0.249 0.751 38 H 0.139 0.861 39 H 0.105 0.895 40 H 0.155 0.845 41 H 0.117 0.883 42 H 0.271 0.729 43 H 0.246 0.754 44 H 0.065 0.935 45 H 0.125 0.875 46 H 0.106 0.894 47 H 0.222 0.778 48 H -0.189 1.189 49 H -0.213 1.213 50 H 0.143 0.857 51 H 0.178 0.822 52 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.707 6.611 -2.021 7.844 hybrid contribution -0.628 1.159 2.054 2.441 sum -4.334 7.770 0.033 8.898 Atomic orbital electron populations 1.22668 0.83558 1.03382 1.02755 1.59162 1.10151 1.13186 1.39840 1.22153 1.03216 0.88087 0.95684 1.20620 0.78557 0.81602 0.88738 1.90708 1.40490 1.64470 1.47468 1.45595 1.57433 1.13255 1.19549 1.21802 0.98095 0.94085 0.84855 0.89083 1.23287 0.94456 0.93473 1.04437 1.22865 0.97741 0.94168 0.98662 0.89531 1.22274 0.72439 1.00951 1.03344 1.50752 1.08376 1.53021 1.04465 1.26840 0.87999 0.94980 0.94327 1.70545 1.17413 1.26226 1.17225 1.26427 0.98541 0.98080 0.88719 1.77913 0.97885 1.26813 1.14930 1.23580 0.97956 0.96585 1.00244 1.18823 0.94709 0.92779 0.89583 1.20326 0.98422 0.95253 0.96052 1.25182 0.96002 1.06991 0.89718 1.86675 1.21589 1.42034 1.84701 0.92379 0.73991 0.76436 0.88306 1.20790 0.98704 0.99083 0.91619 1.19989 1.06749 1.00181 0.91951 1.18388 0.75774 0.77548 0.82984 1.93235 1.41294 1.88102 1.93387 1.93204 1.70272 1.95402 1.56540 1.93195 1.96168 1.35241 1.92051 1.21139 0.92878 0.91277 1.01758 1.21967 1.00518 1.01576 0.91338 0.89504 0.90950 0.93311 0.88077 0.86565 0.75109 0.86134 0.89534 0.84543 0.88279 0.72876 0.75353 0.93505 0.87530 0.89383 0.77833 1.18865 1.21280 0.85670 0.82154 0.81572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 8.63 127.69 1.10 1.03 16 2 N -0.50 1.38 3.22 -724.43 -2.33 -0.96 16 3 C 0.04 -0.25 5.03 85.56 0.43 0.18 16 4 C 0.52 -1.27 7.55 87.66 0.66 -0.61 16 5 O -0.55 -3.18 13.93 -3.04 -0.04 -3.22 16 6 N -0.71 4.95 5.26 -440.03 -2.32 2.63 16 7 C 0.12 -0.81 4.29 45.52 0.20 -0.62 16 8 H 0.09 -0.28 7.50 -2.39 -0.02 -0.30 16 9 C -0.12 1.44 7.38 31.12 0.23 1.67 16 10 C -0.12 1.06 3.77 -10.18 -0.04 1.02 16 11 H 0.09 -0.43 8.01 -2.39 -0.02 -0.45 16 12 C 0.13 -1.31 6.39 86.38 0.55 -0.76 16 13 N -0.38 0.81 3.69 -352.05 -1.30 -0.49 16 14 C 0.25 -0.52 12.63 180.36 2.28 1.76 16 15 N -0.59 -2.95 11.19 -204.00 -2.28 -5.24 16 16 C 0.18 0.75 13.03 180.77 2.36 3.10 16 17 N -0.35 -1.38 12.46 -61.25 -0.76 -2.15 16 18 C -0.14 0.98 7.45 31.21 0.23 1.21 16 19 C 0.14 -0.19 4.61 38.21 0.18 -0.01 16 20 C -0.10 -0.29 5.28 -19.73 -0.10 -0.40 16 21 C -0.07 -0.22 2.30 71.24 0.16 -0.06 16 22 O -0.54 -2.94 12.65 -148.98 -1.89 -4.83 16 23 Si 0.79 2.14 30.41 68.60 2.09 4.23 16 24 C -0.08 -0.43 8.01 22.25 0.18 -0.25 16 25 C -0.19 -0.60 5.46 -19.84 -0.11 -0.71 16 26 C 0.51 2.74 3.36 71.24 0.24 2.98 16 27 F -0.18 -1.17 17.30 44.97 0.78 -0.39 16 28 F -0.17 -0.81 16.46 44.97 0.74 -0.07 16 29 F -0.19 -1.56 16.46 44.97 0.74 -0.82 16 30 C -0.05 0.11 9.39 22.25 0.21 0.32 16 31 C -0.13 0.64 8.70 22.40 0.19 0.83 16 32 H 0.09 0.02 5.88 -2.39 -0.01 0.01 16 33 H 0.07 -0.19 7.53 -2.39 -0.02 -0.21 16 34 H 0.05 -0.33 7.49 -2.39 -0.02 -0.34 16 35 H 0.10 -1.22 7.46 -2.39 -0.02 -1.24 16 36 H 0.12 -0.93 8.06 -2.38 -0.02 -0.95 16 37 H 0.41 -4.72 8.70 -92.71 -0.81 -5.53 16 38 H 0.12 -1.86 8.10 -2.39 -0.02 -1.88 16 39 H 0.09 -1.09 8.14 -2.39 -0.02 -1.11 16 40 H 0.14 -2.25 7.79 -2.39 -0.02 -2.26 16 41 H 0.10 -1.08 8.14 -2.39 -0.02 -1.10 16 42 H 0.26 -3.01 8.06 -2.91 -0.02 -3.03 16 43 H 0.23 -0.34 8.06 -2.91 -0.02 -0.37 16 44 H 0.05 -0.05 8.14 -2.39 -0.02 -0.06 16 45 H 0.11 -1.00 7.90 -2.38 -0.02 -1.02 16 46 H 0.09 0.18 7.78 -2.39 -0.02 0.16 16 47 H 0.37 1.00 7.59 -74.06 -0.56 0.44 16 48 H -0.26 -1.34 7.11 99.48 0.71 -0.63 16 49 H -0.29 -2.48 6.81 99.48 0.68 -1.81 16 50 H 0.13 0.88 4.48 -2.91 -0.01 0.86 16 51 H 0.16 -0.98 7.60 -2.91 -0.02 -1.00 16 52 H 0.17 -1.78 7.17 -2.91 -0.02 -1.80 16 Total: 0.00 -26.27 439.77 2.02 -24.25 By element: Atomic # 1 Polarization: -23.30 SS G_CDS: -0.35 Total: -23.64 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 8.95 Total: 10.69 kcal Atomic # 7 Polarization: 2.79 SS G_CDS: -8.99 Total: -6.20 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -1.93 Total: -8.04 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 2.26 Total: -1.28 kcal Atomic # 14 Polarization: 2.14 SS G_CDS: 2.09 Total: 4.23 kcal Total: -26.27 2.02 -24.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_6406254.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.637 kcal (2) G-P(sol) polarization free energy of solvation -26.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds