Wall clock time and date at job start Tue Mar 9 2021 12:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86305 * 109.47098 * 2 1 4 4 C 1.50696 * 109.46973 * 119.99580 * 2 1 3 5 5 C 1.36452 * 120.29762 * 119.97531 * 4 2 1 6 6 C 1.40087 * 119.25685 * 179.76964 * 5 4 2 7 7 C 1.40857 * 132.86757 * 179.65892 * 6 5 4 8 8 C 1.46571 * 126.57442 * 0.64573 * 7 6 5 9 9 O 1.21721 * 120.00108 * 359.71491 * 8 7 6 10 10 N 1.34776 * 119.99509 * 179.71263 * 8 7 6 11 11 C 1.46505 * 119.99495 * 180.02562 * 10 8 7 12 12 H 1.08999 * 112.84985 * 336.19332 * 11 10 8 13 13 C 1.53780 * 113.69080 * 107.46699 * 11 10 8 14 14 C 1.53784 * 87.08145 * 89.12493 * 13 11 10 15 15 H 1.08997 * 113.68549 * 270.87169 * 14 13 11 16 16 C 1.52998 * 113.61381 * 139.98089 * 14 13 11 17 17 N 1.46501 * 109.47123 * 87.49952 * 16 14 13 18 18 C 1.36882 * 126.40212 * 270.21179 * 17 16 14 19 19 C 1.34661 * 106.81949 * 180.25100 * 18 17 16 20 20 N 1.34124 * 108.02302 * 359.74697 * 19 18 17 21 21 C 1.30505 * 109.25474 * 359.97438 * 20 19 18 22 22 C 1.53780 * 113.61283 * 205.00120 * 11 10 8 23 23 C 1.40548 * 106.84326 * 180.38495 * 7 6 5 24 24 N 1.30736 * 108.74662 * 0.22678 * 23 7 6 25 25 N 1.36580 * 120.22927 * 0.48957 * 6 5 4 26 26 C 1.36241 * 120.08112 * 359.51399 * 25 6 5 27 27 C 1.35183 * 120.70518 * 0.24984 * 26 25 6 28 28 H 0.96699 * 113.99844 * 300.00664 * 1 2 3 29 29 H 1.08997 * 109.47387 * 239.99403 * 2 1 3 30 30 H 1.48500 * 109.99668 * 299.99370 * 3 2 1 31 31 H 1.48494 * 110.00309 * 61.31609 * 3 2 1 32 32 H 1.08003 * 120.36741 * 0.03008 * 5 4 2 33 33 H 0.96996 * 120.00662 * 0.02562 * 10 8 7 34 34 H 1.08998 * 113.61299 * 334.57294 * 13 11 10 35 35 H 1.08995 * 113.61186 * 203.67373 * 13 11 10 36 36 H 1.09006 * 109.46920 * 327.50335 * 16 14 13 37 37 H 1.08997 * 109.47249 * 207.50192 * 16 14 13 38 38 H 1.08008 * 126.58741 * 359.97438 * 18 17 16 39 39 H 1.08008 * 125.99263 * 179.71898 * 19 18 17 40 40 H 1.08002 * 125.64815 * 179.97438 * 21 20 19 41 41 H 1.08996 * 113.61787 * 156.24717 * 22 11 10 42 42 H 1.09002 * 113.68968 * 25.35880 * 22 11 10 43 43 H 1.08000 * 125.63011 * 180.24535 * 23 7 6 44 44 H 1.07993 * 119.64742 * 180.28023 * 26 25 6 45 45 H 1.08005 * 119.84055 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.7158 -1.8206 1.1124 6 6 3.1746 -2.4609 2.2708 7 6 3.9743 -3.6010 2.4826 8 6 4.5752 -4.4504 1.4503 9 8 4.3959 -4.1970 0.2733 10 7 5.3263 -5.5119 1.8043 11 6 5.9275 -6.3606 0.7724 12 1 5.3965 -6.3115 -0.1782 13 6 7.4493 -6.1856 0.6378 14 6 7.5910 -7.2872 1.7015 15 1 7.6002 -6.9099 2.7240 16 6 8.7307 -8.2683 1.4198 17 7 9.9746 -7.7496 1.9942 18 6 10.8800 -6.9348 1.3698 19 6 11.8716 -6.7062 2.2517 20 7 11.5771 -7.3590 3.3857 21 6 10.4402 -7.9830 3.2402 22 6 6.2134 -7.7958 1.2449 23 6 4.0904 -3.7642 3.8738 24 7 3.4178 -2.8124 4.4661 25 7 2.8306 -1.9827 3.5030 26 6 2.0468 -0.8736 3.6107 27 6 1.5965 -0.2368 2.5065 28 1 -0.3933 0.4418 0.7650 29 1 1.7924 -0.5139 -0.8899 30 1 1.5616 2.4678 -1.2086 31 1 1.5879 2.4586 1.2241 32 1 2.9833 -2.1988 0.1369 33 1 5.4690 -5.7141 2.7422 34 1 7.8077 -5.2108 0.9684 35 1 7.8367 -6.4707 -0.3403 36 1 8.8498 -8.3873 0.3428 37 1 8.4982 -9.2340 1.8685 38 1 10.8141 -6.5526 0.3617 39 1 12.7505 -6.1033 2.0764 40 1 9.9550 -8.5902 3.9901 41 1 6.2629 -8.5212 0.4328 42 1 5.5745 -8.1223 2.0655 43 1 4.6442 -4.5466 4.3714 44 1 1.7828 -0.4989 4.5885 45 1 0.9763 0.6416 2.6081 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_11618758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:14 Heat of formation + Delta-G solvation = 136.900592 kcal Electronic energy + Delta-G solvation = -30009.811659 eV Core-core repulsion = 25805.183718 eV Total energy + Delta-G solvation = -4204.627941 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.34850 -42.90485 -41.08769 -39.55931 -39.11357 -37.33548 -35.30209 -34.30788 -33.71703 -32.14498 -30.51192 -30.29549 -28.69611 -27.28233 -26.66886 -25.23042 -24.37181 -23.56249 -23.03663 -22.20744 -21.76332 -21.41610 -20.24868 -19.21579 -18.62376 -18.28816 -17.93760 -17.51093 -17.03432 -16.98965 -16.48981 -16.41642 -15.93390 -15.86948 -15.64926 -15.48627 -15.12867 -14.90570 -14.80503 -14.70990 -14.48663 -14.25336 -14.14030 -13.83814 -13.67883 -13.51710 -13.38866 -13.26459 -12.70301 -12.49001 -12.30219 -12.13667 -11.92041 -11.66404 -11.60204 -11.29602 -11.00393 -10.91126 -10.87754 -10.42597 -10.34947 -10.06076 -9.40689 -8.82872 -4.90029 -0.59093 -0.16685 0.98855 0.99552 1.20027 1.20290 1.58943 1.87528 1.97478 2.05881 2.18941 2.27068 2.45808 3.05630 3.20954 3.34842 3.44694 3.52079 3.54307 3.67988 3.76114 3.83990 3.85669 3.93192 3.95517 4.09341 4.16008 4.22130 4.30987 4.33298 4.37353 4.55518 4.57609 4.62889 4.70899 4.77646 4.80918 4.83524 4.92015 5.03577 5.06534 5.08638 5.12893 5.22372 5.25771 5.40325 5.61865 5.65167 5.86431 6.25216 6.37189 6.45011 6.57501 7.20421 7.27853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.084 4.084 3 Si 0.767 3.233 4 C -0.050 4.050 5 C -0.115 4.115 6 C 0.153 3.847 7 C -0.341 4.341 8 C 0.601 3.399 9 O -0.588 6.588 10 N -0.699 5.699 11 C 0.113 3.887 12 H 0.085 0.915 13 C -0.145 4.145 14 C -0.115 4.115 15 H 0.095 0.905 16 C 0.110 3.890 17 N -0.451 5.451 18 C -0.046 4.046 19 C -0.068 4.068 20 N -0.546 5.546 21 C 0.174 3.826 22 C -0.119 4.119 23 C 0.130 3.870 24 N -0.340 5.340 25 N -0.274 5.274 26 C 0.117 3.883 27 C -0.156 4.156 28 H 0.390 0.610 29 H 0.124 0.876 30 H -0.293 1.293 31 H -0.254 1.254 32 H 0.152 0.848 33 H 0.411 0.589 34 H 0.052 0.948 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.194 0.806 39 H 0.169 0.831 40 H 0.229 0.771 41 H 0.116 0.884 42 H 0.090 0.910 43 H 0.232 0.768 44 H 0.205 0.795 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 -0.411 0.663 2.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.191 4.191 3 Si 0.667 3.333 4 C -0.056 4.056 5 C -0.135 4.135 6 C 0.031 3.969 7 C -0.356 4.356 8 C 0.391 3.609 9 O -0.470 6.470 10 N -0.350 5.350 11 C 0.008 3.992 12 H 0.104 0.896 13 C -0.184 4.184 14 C -0.134 4.134 15 H 0.113 0.887 16 C -0.011 4.011 17 N -0.133 5.133 18 C -0.180 4.180 19 C -0.215 4.215 20 N -0.265 5.265 21 C -0.109 4.109 22 C -0.157 4.157 23 C -0.050 4.050 24 N -0.160 5.160 25 N -0.038 5.038 26 C -0.009 4.009 27 C -0.177 4.177 28 H 0.241 0.759 29 H 0.142 0.858 30 H -0.220 1.220 31 H -0.178 1.178 32 H 0.170 0.830 33 H 0.248 0.752 34 H 0.071 0.929 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.136 0.864 38 H 0.211 0.789 39 H 0.186 0.814 40 H 0.245 0.755 41 H 0.134 0.866 42 H 0.108 0.892 43 H 0.248 0.752 44 H 0.222 0.778 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -2.804 0.597 1.194 3.106 hybrid contribution -0.998 -0.481 -0.595 1.258 sum -3.802 0.116 0.599 3.851 Atomic orbital electron populations 1.86682 1.17349 1.80606 1.50365 1.25290 0.84027 1.12415 0.97389 0.93434 0.90707 0.70596 0.78535 1.20577 0.94629 0.93848 0.96566 1.20662 0.99822 0.95515 0.97503 1.19562 0.95888 0.94577 0.86839 1.19703 1.17555 1.04157 0.94194 1.16985 0.77159 0.79901 0.86834 1.90755 1.63362 1.72817 1.20069 1.45242 1.51355 1.27961 1.10419 1.21845 0.93679 0.91557 0.92154 0.89642 1.23521 0.95763 0.98957 1.00151 1.22925 0.94430 0.96217 0.99877 0.88719 1.22234 0.79533 0.98169 1.01150 1.45747 1.18749 1.36619 1.12174 1.23049 0.92583 1.00946 1.01418 1.22587 1.02105 1.05739 0.91034 1.70239 1.15291 1.13693 1.27296 1.25518 0.93477 1.03598 0.88267 1.23285 0.94674 0.94839 1.02917 1.24568 0.93440 0.95739 0.91294 1.77573 1.19628 1.07309 1.11538 1.46306 1.32411 1.19642 1.05410 1.22187 0.91014 0.84213 1.03477 1.21103 1.03882 1.03177 0.89551 0.75936 0.85849 1.22001 1.17824 0.83012 0.75212 0.92878 0.88019 0.87404 0.86387 0.78930 0.81370 0.75489 0.86565 0.89171 0.75194 0.77832 0.79250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.37 12.88 -148.98 -1.92 -1.54 16 2 C -0.08 0.24 2.84 71.23 0.20 0.44 16 3 Si 0.77 -3.97 31.97 68.60 2.19 -1.77 16 4 C -0.05 0.08 4.53 -19.81 -0.09 -0.01 16 5 C -0.12 -0.45 9.35 22.30 0.21 -0.24 16 6 C 0.15 0.93 6.76 39.49 0.27 1.20 16 7 C -0.34 -1.80 6.17 -19.90 -0.12 -1.92 16 8 C 0.60 3.77 7.78 86.42 0.67 4.45 16 9 O -0.59 -7.97 15.30 -4.41 -0.07 -8.03 16 10 N -0.70 1.17 5.26 -444.08 -2.33 -1.16 16 11 C 0.11 -0.38 4.32 45.52 0.20 -0.18 16 12 H 0.09 0.13 7.46 -2.39 -0.02 0.11 16 13 C -0.15 0.73 7.43 31.12 0.23 0.96 16 14 C -0.12 1.09 3.84 -10.27 -0.04 1.05 16 15 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 16 C 0.11 -1.09 5.99 86.38 0.52 -0.57 16 17 N -0.45 1.05 2.75 -529.06 -1.46 -0.41 16 18 C -0.05 -0.03 11.58 83.08 0.96 0.93 16 19 C -0.07 -0.44 11.87 83.52 0.99 0.55 16 20 N -0.55 -5.25 11.25 -200.31 -2.25 -7.50 16 21 C 0.17 0.29 12.56 180.26 2.26 2.56 16 22 C -0.12 1.24 7.39 31.12 0.23 1.47 16 23 C 0.13 0.12 11.44 85.42 0.98 1.09 16 24 N -0.34 -1.64 12.57 -56.62 -0.71 -2.35 16 25 N -0.27 -1.03 3.86 -187.28 -0.72 -1.75 16 26 C 0.12 -0.37 11.17 83.30 0.93 0.56 16 27 C -0.16 0.90 8.38 22.03 0.18 1.09 16 28 H 0.39 -3.42 8.08 -74.06 -0.60 -4.02 16 29 H 0.12 -0.32 7.71 -2.39 -0.02 -0.33 16 30 H -0.29 -0.80 7.11 99.48 0.71 -0.09 16 31 H -0.25 1.20 7.05 99.48 0.70 1.90 16 32 H 0.15 0.88 7.01 -2.91 -0.02 0.86 16 33 H 0.41 -3.06 7.62 -92.71 -0.71 -3.77 16 34 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.10 -0.69 7.90 -2.39 -0.02 -0.71 16 36 H 0.11 -1.27 7.84 -2.38 -0.02 -1.29 16 37 H 0.12 -1.59 8.14 -2.39 -0.02 -1.61 16 38 H 0.19 -0.93 8.06 -2.91 -0.02 -0.95 16 39 H 0.17 0.68 8.06 -2.91 -0.02 0.65 16 40 H 0.23 -1.28 8.06 -2.91 -0.02 -1.31 16 41 H 0.12 -1.50 8.10 -2.39 -0.02 -1.52 16 42 H 0.09 -1.04 8.14 -2.39 -0.02 -1.06 16 43 H 0.23 -1.97 7.46 -2.91 -0.02 -1.99 16 44 H 0.20 -1.94 8.06 -2.91 -0.02 -1.97 16 45 H 0.19 -2.44 7.26 -2.91 -0.02 -2.46 16 Total: 0.00 -32.57 384.65 1.09 -31.48 By element: Atomic # 1 Polarization: -20.16 SS G_CDS: -0.23 Total: -20.39 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 8.58 Total: 13.43 kcal Atomic # 7 Polarization: -5.69 SS G_CDS: -7.48 Total: -13.17 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -1.99 Total: -9.58 kcal Atomic # 14 Polarization: -3.97 SS G_CDS: 2.19 Total: -1.77 kcal Total: -32.57 1.09 -31.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_11618758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.385 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds