Wall clock time and date at job start Tue Mar 9 2021 12:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86298 * 109.46847 * 2 1 4 4 C 1.50698 * 109.47158 * 120.00124 * 2 1 3 5 5 C 1.38184 * 119.84432 * 15.00320 * 4 2 1 6 6 C 1.38310 * 120.14697 * 180.02562 * 5 4 2 7 7 F 1.35101 * 120.08825 * 180.02562 * 6 5 4 8 8 C 1.39805 * 119.83241 * 359.97438 * 6 5 4 9 9 C 1.47695 * 120.15668 * 179.72518 * 8 6 5 10 10 O 1.21576 * 119.99954 * 0.02562 * 9 8 6 11 11 N 1.34780 * 119.99865 * 180.02562 * 9 8 6 12 12 C 1.46499 * 119.99711 * 180.02562 * 11 9 8 13 13 H 1.09002 * 112.85452 * 23.79922 * 12 11 9 14 14 C 1.53784 * 113.61755 * 155.00167 * 12 11 9 15 15 C 1.53776 * 87.08240 * 89.10977 * 14 12 11 16 16 H 1.08999 * 113.61831 * 270.80303 * 15 14 12 17 17 C 1.53003 * 113.61258 * 139.98299 * 15 14 12 18 18 N 1.46502 * 109.47179 * 175.00663 * 17 15 14 19 19 C 1.36886 * 126.39307 * 269.71358 * 18 17 15 20 20 C 1.34664 * 106.81400 * 179.84081 * 19 18 17 21 21 N 1.34122 * 108.02406 * 0.42413 * 20 19 18 22 22 C 1.30502 * 109.25570 * 359.72779 * 21 20 19 23 23 C 1.53783 * 87.08204 * 25.43688 * 15 14 12 24 24 C 1.39660 * 119.68884 * 0.02562 * 8 6 5 25 25 C 1.38070 * 119.85199 * 359.97438 * 24 8 6 26 26 F 1.35091 * 119.91742 * 179.97438 * 25 24 8 27 27 H 0.96691 * 114.00301 * 60.00263 * 1 2 3 28 28 H 1.09005 * 109.46692 * 239.99906 * 2 1 3 29 29 H 1.48495 * 110.00019 * 60.00417 * 3 2 1 30 30 H 1.48507 * 109.99675 * 181.32044 * 3 2 1 31 31 H 1.08004 * 119.92945 * 0.04016 * 5 4 2 32 32 H 0.96998 * 120.00173 * 359.97438 * 11 9 8 33 33 H 1.08998 * 113.61716 * 203.66536 * 14 12 11 34 34 H 1.09004 * 113.61061 * 334.56425 * 14 12 11 35 35 H 1.09002 * 109.47049 * 295.00300 * 17 15 14 36 36 H 1.08995 * 109.47013 * 54.99861 * 17 15 14 37 37 H 1.08003 * 126.59171 * 359.97438 * 19 18 17 38 38 H 1.08001 * 125.98545 * 180.11577 * 20 19 18 39 39 H 1.08002 * 125.64801 * 180.02562 * 22 21 20 40 40 H 1.08997 * 113.61883 * 220.01908 * 23 15 14 41 41 H 1.09003 * 113.61801 * 89.11335 * 23 15 14 42 42 H 1.08004 * 120.07517 * 179.97438 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.0691 -1.4963 1.9710 6 6 1.5233 -2.1507 3.1016 7 9 0.6794 -2.9191 3.8244 8 6 2.8584 -2.0158 3.4940 9 6 3.3496 -2.7066 4.7036 10 8 2.5925 -3.3948 5.3603 11 7 4.6371 -2.5739 5.0793 12 6 5.1245 -3.2595 6.2787 13 1 4.5268 -4.1330 6.5394 14 6 6.6379 -3.5318 6.2607 15 6 6.8146 -2.1506 6.9134 16 1 6.9155 -1.3376 6.1945 17 6 7.8909 -2.1196 8.0003 18 7 8.0664 -0.7447 8.4747 19 6 8.9391 0.1826 7.9725 20 6 8.7711 1.3069 8.6944 21 7 7.8284 1.0696 9.6185 22 6 7.4017 -0.1572 9.4929 23 6 5.3880 -2.3154 7.4637 24 6 3.7238 -1.2198 2.7405 25 6 3.2566 -0.5724 1.6141 26 9 4.0925 0.1983 0.8845 27 1 -0.3933 0.4416 -0.7650 28 1 1.7923 -0.5139 -0.8900 29 1 1.5615 2.4678 1.2085 30 1 3.5346 1.7703 -0.0322 31 1 0.0382 -1.5999 1.6661 32 1 5.2413 -2.0252 4.5551 33 1 6.9403 -4.3597 6.9019 34 1 7.0578 -3.5972 5.2569 35 1 7.5859 -2.7547 8.8320 36 1 8.8322 -2.4855 7.5901 37 1 9.6283 0.0406 7.1531 38 1 9.3056 2.2352 8.5569 39 1 6.6424 -0.6251 10.1020 40 1 4.7989 -1.3990 7.4311 41 1 5.3487 -2.8108 8.4339 42 1 4.7563 -1.1110 3.0382 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_12360598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:02 Heat of formation + Delta-G solvation = -15.724426 kcal Electronic energy + Delta-G solvation = -30152.358080 eV Core-core repulsion = 25545.045592 eV Total energy + Delta-G solvation = -4607.312488 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.123 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.64265 -50.23191 -42.97176 -41.70466 -40.40153 -39.38914 -37.65941 -35.54352 -34.29772 -32.98069 -31.57665 -30.40980 -29.04125 -27.86645 -26.77101 -24.70680 -24.36698 -23.55583 -22.28871 -22.13998 -21.83526 -20.46915 -19.87353 -19.01152 -18.61301 -18.40589 -18.04972 -17.70469 -17.23929 -17.02027 -16.92174 -16.52409 -16.12832 -15.97939 -15.92242 -15.84068 -15.62483 -15.39439 -15.20293 -14.97308 -14.79143 -14.59043 -14.25834 -14.22382 -13.74606 -13.70818 -13.46228 -13.16897 -13.12668 -12.84429 -12.57617 -12.39384 -11.79487 -11.77111 -11.40607 -11.35648 -11.08966 -10.92274 -10.52159 -10.30549 -10.25022 -9.79179 -9.46081 -4.97102 -0.91867 -0.43851 1.07866 1.14124 1.40607 1.63945 1.71697 1.91285 1.94766 2.14121 2.21566 2.59697 2.70826 2.89236 3.07374 3.31254 3.37864 3.42735 3.56462 3.66594 3.73355 3.82562 3.86943 4.04892 4.07523 4.10381 4.20786 4.22661 4.37290 4.44337 4.50068 4.57604 4.59341 4.64175 4.71425 4.72403 4.76836 4.77927 4.92676 4.95612 5.06039 5.26206 5.33543 5.44250 5.81952 6.17859 6.30122 6.79812 6.86952 7.15198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.079 4.079 3 Si 0.771 3.229 4 C -0.060 4.060 5 C -0.114 4.114 6 C 0.138 3.862 7 F -0.125 7.125 8 C -0.163 4.163 9 C 0.562 3.438 10 O -0.560 6.560 11 N -0.691 5.691 12 C 0.107 3.893 13 H 0.090 0.910 14 C -0.115 4.115 15 C -0.117 4.117 16 H 0.093 0.907 17 C 0.110 3.890 18 N -0.452 5.452 19 C -0.046 4.046 20 C -0.068 4.068 21 N -0.548 5.548 22 C 0.174 3.826 23 C -0.148 4.148 24 C -0.069 4.069 25 C 0.057 3.943 26 F -0.114 7.114 27 H 0.413 0.587 28 H 0.120 0.880 29 H -0.315 1.315 30 H -0.254 1.254 31 H 0.169 0.831 32 H 0.414 0.586 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.203 0.797 38 H 0.171 0.829 39 H 0.220 0.780 40 H 0.052 0.948 41 H 0.108 0.892 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.561 -1.435 -8.385 9.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.188 4.188 3 Si 0.675 3.325 4 C -0.062 4.062 5 C -0.132 4.132 6 C 0.117 3.883 7 F -0.103 7.103 8 C -0.167 4.167 9 C 0.349 3.651 10 O -0.439 6.439 11 N -0.343 5.343 12 C 0.002 3.998 13 H 0.109 0.891 14 C -0.154 4.154 15 C -0.136 4.136 16 H 0.112 0.888 17 C -0.011 4.011 18 N -0.133 5.133 19 C -0.180 4.180 20 C -0.215 4.215 21 N -0.267 5.267 22 C -0.109 4.109 23 C -0.187 4.187 24 C -0.088 4.088 25 C 0.038 3.962 26 F -0.093 7.093 27 H 0.266 0.734 28 H 0.137 0.863 29 H -0.243 1.243 30 H -0.180 1.180 31 H 0.186 0.814 32 H 0.252 0.748 33 H 0.139 0.861 34 H 0.111 0.889 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.219 0.781 38 H 0.188 0.812 39 H 0.237 0.763 40 H 0.071 0.929 41 H 0.126 0.874 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 4.317 -1.253 -6.425 7.841 hybrid contribution 0.148 -0.610 -0.224 0.667 sum 4.464 -1.863 -6.649 8.223 Atomic orbital electron populations 1.86338 1.16117 1.82573 1.52018 1.24788 0.87052 1.10719 0.96231 0.94876 0.78086 0.73147 0.86376 1.19834 0.91573 0.96479 0.98275 1.20884 1.02799 0.96653 0.92889 1.18017 0.87110 0.92011 0.91158 1.91590 1.69899 1.72372 1.76471 1.19819 0.93396 1.04425 0.99058 1.17993 0.82911 0.80437 0.83764 1.90866 1.56510 1.40892 1.55601 1.45429 1.09595 1.50888 1.28403 1.21996 0.97084 0.95952 0.84793 0.89149 1.23291 0.91955 0.96919 1.03187 1.22943 0.93806 0.99206 0.97646 0.88833 1.22237 1.01532 0.78638 0.98676 1.45757 1.29069 1.12833 1.25676 1.23162 1.00300 0.90069 1.04473 1.22637 1.01225 1.00438 0.97183 1.70241 1.14542 1.16301 1.25590 1.25364 1.01414 0.90166 0.93975 1.23575 0.96364 0.99669 0.99054 1.21271 1.01580 0.93903 0.92028 1.17308 0.87947 0.97383 0.93560 1.91526 1.70609 1.71400 1.75717 0.73449 0.86268 1.24297 1.18009 0.81377 0.74791 0.86070 0.88930 0.86873 0.86608 0.78053 0.81160 0.76341 0.92941 0.87402 0.79961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.69 11.47 -148.98 -1.71 0.98 16 2 C -0.08 0.34 2.95 71.24 0.21 0.56 16 3 Si 0.77 -3.08 30.72 68.60 2.11 -0.97 16 4 C -0.06 -0.07 5.16 -19.78 -0.10 -0.17 16 5 C -0.11 -0.43 9.33 22.27 0.21 -0.22 16 6 C 0.14 1.01 7.28 22.67 0.17 1.18 16 7 F -0.13 -1.63 15.55 44.97 0.70 -0.93 16 8 C -0.16 -0.65 5.88 -20.06 -0.12 -0.77 16 9 C 0.56 3.40 7.77 86.74 0.67 4.08 16 10 O -0.56 -8.49 14.94 -3.95 -0.06 -8.55 16 11 N -0.69 1.67 5.21 -443.02 -2.31 -0.64 16 12 C 0.11 -0.43 4.32 45.52 0.20 -0.23 16 13 H 0.09 0.06 7.46 -2.39 -0.02 0.04 16 14 C -0.12 1.32 7.39 31.12 0.23 1.55 16 15 C -0.12 1.16 3.84 -10.27 -0.04 1.12 16 16 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 17 C 0.11 -1.14 5.99 86.38 0.52 -0.62 16 18 N -0.45 1.11 2.75 -529.06 -1.46 -0.35 16 19 C -0.05 0.03 11.58 83.08 0.96 0.99 16 20 C -0.07 -0.41 11.87 83.52 0.99 0.59 16 21 N -0.55 -5.66 11.25 -200.32 -2.25 -7.91 16 22 C 0.17 0.51 12.56 180.26 2.26 2.78 16 23 C -0.15 0.79 7.43 31.12 0.23 1.03 16 24 C -0.07 0.12 9.51 22.57 0.21 0.33 16 25 C 0.06 0.02 6.65 22.33 0.15 0.17 16 26 F -0.11 -0.07 12.84 44.97 0.58 0.50 16 27 H 0.41 -6.22 8.74 -74.06 -0.65 -6.87 16 28 H 0.12 -1.10 7.96 -2.38 -0.02 -1.11 16 29 H -0.31 -1.86 7.11 99.48 0.71 -1.15 16 30 H -0.25 -0.07 5.39 99.48 0.54 0.46 16 31 H 0.17 0.45 7.12 -2.91 -0.02 0.43 16 32 H 0.41 -3.56 6.73 -92.71 -0.62 -4.19 16 33 H 0.12 -1.72 8.10 -2.39 -0.02 -1.74 16 34 H 0.09 -1.20 8.14 -2.38 -0.02 -1.22 16 35 H 0.11 -1.45 7.84 -2.39 -0.02 -1.47 16 36 H 0.12 -1.58 8.14 -2.39 -0.02 -1.60 16 37 H 0.20 -1.54 8.06 -2.91 -0.02 -1.57 16 38 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 39 H 0.22 -0.61 8.06 -2.91 -0.02 -0.64 16 40 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 41 H 0.11 -0.81 7.90 -2.39 -0.02 -0.83 16 42 H 0.18 -1.71 6.41 -2.91 -0.02 -1.73 16 Total: 0.00 -31.06 361.75 2.04 -29.02 By element: Atomic # 1 Polarization: -23.20 SS G_CDS: -0.31 Total: -23.51 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 6.75 Total: 12.36 kcal Atomic # 7 Polarization: -2.88 SS G_CDS: -6.02 Total: -8.90 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -1.77 Total: -7.57 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 1.28 Total: -0.43 kcal Atomic # 14 Polarization: -3.08 SS G_CDS: 2.11 Total: -0.97 kcal Total: -31.06 2.04 -29.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_12360598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.298 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds