Wall clock time and date at job start Tue Mar 9 2021 12:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86302 * 109.46987 * 2 1 4 4 C 1.50696 * 109.47218 * 240.00021 * 2 1 3 5 5 C 1.38240 * 119.97662 * 119.99666 * 4 2 1 6 6 C 1.38288 * 120.11591 * 180.02562 * 5 4 2 7 7 C 1.38119 * 120.05366 * 0.24016 * 6 5 4 8 8 C 1.38757 * 119.94413 * 359.50981 * 7 6 5 9 9 O 1.35896 * 120.05426 * 180.21111 * 8 7 6 10 10 C 1.42901 * 117.00083 * 0.29963 * 9 8 7 11 11 C 1.53007 * 109.47274 * 180.02562 * 10 9 8 12 12 C 1.50689 * 109.47307 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00182 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00235 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99997 * 179.97438 * 14 12 11 16 16 H 1.08998 * 112.85648 * 336.20292 * 15 14 12 17 17 C 1.53784 * 113.61157 * 107.51269 * 15 14 12 18 18 C 1.53775 * 87.08516 * 89.11193 * 17 15 14 19 19 H 1.09000 * 113.61801 * 270.88549 * 18 17 15 20 20 C 1.52999 * 113.68952 * 139.99166 * 18 17 15 21 21 N 1.46504 * 109.47202 * 87.46602 * 20 18 17 22 22 C 1.36880 * 126.39493 * 89.99945 * 21 20 18 23 23 C 1.34666 * 106.81563 * 180.02562 * 22 21 20 24 24 N 1.34130 * 108.02319 * 359.97438 * 23 22 21 25 25 C 1.30505 * 109.25007 * 359.72563 * 24 23 22 26 26 C 1.53783 * 87.07971 * 25.43396 * 18 17 15 27 27 C 1.38171 * 119.97135 * 300.02344 * 4 2 1 28 28 H 0.96707 * 114.00013 * 299.99933 * 1 2 3 29 29 H 1.09004 * 109.46929 * 119.99805 * 2 1 3 30 30 H 1.48496 * 110.00067 * 300.00156 * 3 2 1 31 31 H 1.48503 * 109.99859 * 61.32160 * 3 2 1 32 32 H 1.08006 * 119.93931 * 0.02562 * 5 4 2 33 33 H 1.08002 * 119.96980 * 179.97438 * 6 5 4 34 34 H 1.07998 * 120.02956 * 179.72220 * 7 6 5 35 35 H 1.09000 * 109.47190 * 299.99904 * 10 9 8 36 36 H 1.09000 * 109.47473 * 60.00460 * 10 9 8 37 37 H 1.09000 * 109.46703 * 299.99919 * 11 10 9 38 38 H 1.08998 * 109.47110 * 59.99057 * 11 10 9 39 39 H 0.97003 * 119.99793 * 0.02562 * 14 12 11 40 40 H 1.08997 * 113.61438 * 203.66738 * 17 15 14 41 41 H 1.09007 * 113.61111 * 334.56134 * 17 15 14 42 42 H 1.09005 * 109.46933 * 207.46350 * 20 18 17 43 43 H 1.08996 * 109.47111 * 327.46511 * 20 18 17 44 44 H 1.07997 * 126.59540 * 0.03263 * 22 21 20 45 45 H 1.08003 * 125.99296 * 179.97438 * 23 22 21 46 46 H 1.08001 * 125.64414 * 180.29187 * 25 24 23 47 47 H 1.09002 * 113.61349 * 220.01672 * 26 18 17 48 48 H 1.08998 * 113.69269 * 89.13193 * 26 18 17 49 49 H 1.07997 * 120.02764 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7260 -0.0381 -2.1401 6 6 3.1882 -0.6870 -3.2704 7 6 2.8525 -2.0077 -3.4957 8 6 2.0593 -2.6863 -2.5816 9 8 1.7312 -3.9871 -2.7989 10 6 2.2431 -4.5957 -3.9862 11 6 1.7711 -6.0493 -4.0584 12 6 2.3103 -6.6909 -5.3108 13 8 3.0043 -6.0490 -6.0705 14 7 2.0223 -7.9785 -5.5861 15 6 2.5461 -8.6020 -6.8038 16 1 2.7830 -7.8770 -7.5825 17 6 3.6715 -9.6167 -6.5413 18 6 2.5717 -10.6827 -6.4046 19 1 2.1889 -10.7875 -5.3894 20 6 2.9332 -12.0244 -7.0448 21 7 3.6571 -12.8493 -6.0743 22 6 3.1042 -13.7311 -5.1853 23 6 4.1220 -14.2712 -4.4882 24 7 5.2652 -13.7342 -4.9396 25 6 4.9949 -12.8862 -5.8940 26 6 1.7014 -9.7867 -7.3017 27 6 1.5968 -2.0331 -1.4487 28 1 -0.3933 0.4417 0.7651 29 1 1.7923 -0.5138 0.8900 30 1 1.5614 2.4679 -1.2084 31 1 1.5879 2.4585 1.2243 32 1 2.9864 0.9959 -1.9676 33 1 3.8085 -0.1593 -3.9798 34 1 3.2099 -2.5128 -4.3809 35 1 1.8799 -4.0524 -4.8586 36 1 3.3326 -4.5676 -3.9682 37 1 2.1339 -6.5929 -3.1861 38 1 0.6816 -6.0771 -4.0764 39 1 1.4676 -8.4921 -4.9782 40 1 4.3272 -9.7729 -7.3979 41 1 4.2184 -9.4325 -5.6165 42 1 2.0218 -12.5385 -7.3503 43 1 3.5634 -11.8526 -7.9173 44 1 2.0537 -13.9515 -5.0659 45 1 4.0333 -15.0076 -3.7032 46 1 5.7207 -12.3075 -6.4460 47 1 0.6577 -9.7399 -6.9909 48 1 1.8172 -9.9887 -8.3665 49 1 0.9753 -2.5577 -0.7383 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688108_4549614.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:55 Heat of formation + Delta-G solvation = 17.180980 kcal Electronic energy + Delta-G solvation = -29913.028941 eV Core-core repulsion = 25616.293861 eV Total energy + Delta-G solvation = -4296.735081 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.97836 -41.58236 -41.12376 -39.77947 -38.94592 -37.39287 -35.48999 -34.10701 -33.14134 -32.52670 -30.80069 -30.37562 -29.00063 -27.05527 -27.00096 -25.68130 -24.14275 -23.57863 -22.27841 -22.12361 -21.87571 -21.50139 -20.54384 -19.20271 -18.56024 -18.50484 -17.96244 -17.51469 -17.35605 -17.13434 -16.93480 -16.60093 -16.05875 -15.94415 -15.75355 -15.61779 -15.35506 -15.06226 -14.82707 -14.65276 -14.48785 -14.42708 -14.28593 -14.15259 -13.90940 -13.75806 -13.68303 -13.41977 -13.10985 -12.95992 -12.90168 -12.58259 -12.31992 -11.95532 -11.93803 -11.79493 -11.63270 -11.61639 -11.10402 -10.84383 -10.54835 -10.52192 -10.27271 -9.81241 -9.42789 -9.16869 -4.94835 0.29042 0.49324 1.13204 1.27190 1.40628 1.58758 1.62146 1.77961 1.96734 2.31805 2.38862 2.70511 3.07399 3.17907 3.33624 3.40237 3.44227 3.49857 3.73208 3.76799 3.80459 3.83730 3.87638 3.91926 3.93585 3.96455 4.12091 4.18664 4.25453 4.25955 4.31723 4.38840 4.39463 4.46823 4.55326 4.55533 4.58015 4.63388 4.67640 4.73260 4.74838 4.81443 4.86271 5.05047 5.30802 5.33155 5.33395 5.45637 5.54262 5.74322 5.83560 6.21356 6.24584 6.42383 6.43453 6.98365 7.19563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.078 4.078 3 Si 0.686 3.314 4 C -0.036 4.036 5 C -0.152 4.152 6 C -0.073 4.073 7 C -0.203 4.203 8 C 0.132 3.868 9 O -0.316 6.316 10 C 0.075 3.925 11 C -0.142 4.142 12 C 0.524 3.476 13 O -0.534 6.534 14 N -0.713 5.713 15 C 0.121 3.879 16 H 0.108 0.892 17 C -0.147 4.147 18 C -0.129 4.129 19 H 0.097 0.903 20 C 0.113 3.887 21 N -0.457 5.457 22 C -0.059 4.059 23 C -0.029 4.029 24 N -0.496 5.496 25 C 0.183 3.817 26 C -0.136 4.136 27 C -0.124 4.124 28 H 0.380 0.620 29 H 0.079 0.921 30 H -0.255 1.255 31 H -0.261 1.261 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.403 0.597 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.173 0.827 45 H 0.169 0.831 46 H 0.202 0.798 47 H 0.080 0.920 48 H 0.102 0.898 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.045 -0.732 -0.842 2.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.187 4.187 3 Si 0.587 3.413 4 C -0.036 4.036 5 C -0.170 4.170 6 C -0.091 4.091 7 C -0.221 4.221 8 C 0.086 3.914 9 O -0.230 6.230 10 C -0.001 4.001 11 C -0.182 4.182 12 C 0.311 3.689 13 O -0.410 6.410 14 N -0.364 5.364 15 C 0.015 3.985 16 H 0.126 0.874 17 C -0.185 4.185 18 C -0.148 4.148 19 H 0.116 0.884 20 C -0.009 4.009 21 N -0.140 5.140 22 C -0.192 4.192 23 C -0.177 4.177 24 N -0.214 5.214 25 C -0.099 4.099 26 C -0.175 4.175 27 C -0.142 4.142 28 H 0.228 0.772 29 H 0.097 0.903 30 H -0.179 1.179 31 H -0.186 1.186 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.238 0.762 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.190 0.810 45 H 0.186 0.814 46 H 0.218 0.782 47 H 0.098 0.902 48 H 0.120 0.880 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.070 0.025 -1.647 1.964 hybrid contribution -2.169 -0.360 0.365 2.229 sum -3.239 -0.335 -1.282 3.499 Atomic orbital electron populations 1.86597 1.17668 1.80217 1.49762 1.24840 0.84587 1.11113 0.98153 0.94955 0.91761 0.74332 0.80252 1.19012 0.96678 0.93025 0.94923 1.20862 1.01080 0.99812 0.95218 1.20898 0.97902 0.93710 0.96551 1.21379 1.03224 0.96531 1.00987 1.18917 0.94790 0.83144 0.94507 1.85966 1.71185 1.22843 1.43045 1.22403 0.99368 0.91940 0.86389 1.21467 1.03946 0.95575 0.97176 1.20316 0.80003 0.81583 0.86997 1.90759 1.37718 1.62628 1.49920 1.45622 1.53771 1.12137 1.24909 1.21794 0.94604 0.94325 0.87746 0.87376 1.23534 0.96621 0.95007 1.03377 1.23059 0.98392 0.92870 1.00491 0.88446 1.21960 0.97856 0.90490 0.90623 1.45577 1.07796 1.31832 1.28833 1.22746 1.00408 0.98663 0.97383 1.22358 0.88025 1.03960 1.03362 1.70330 1.29093 1.10862 1.11118 1.25008 0.83383 1.01743 0.99789 1.23340 0.99229 0.94187 1.00743 1.20202 1.02764 0.94087 0.97197 0.77188 0.90338 1.17930 1.18644 0.85367 0.85030 0.84953 0.90916 0.90840 0.87381 0.87386 0.76188 0.88622 0.90640 0.88738 0.88456 0.81023 0.81408 0.78175 0.90166 0.87989 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.92 12.74 -35.23 -0.45 -1.37 16 2 C -0.08 -0.04 2.81 36.00 0.10 0.06 16 3 Si 0.69 -0.37 29.79 -169.99 -5.06 -5.43 16 4 C -0.04 -0.08 5.42 -104.65 -0.57 -0.65 16 5 C -0.15 -0.19 8.67 -39.56 -0.34 -0.53 16 6 C -0.07 -0.07 10.04 -39.61 -0.40 -0.47 16 7 C -0.20 -0.37 9.04 -39.43 -0.36 -0.73 16 8 C 0.13 0.38 6.69 -39.22 -0.26 0.12 16 9 O -0.32 -0.72 10.14 -19.41 -0.20 -0.91 16 10 C 0.07 0.03 4.03 37.16 0.15 0.18 16 11 C -0.14 0.27 6.07 -27.88 -0.17 0.10 16 12 C 0.52 -0.14 7.83 -10.99 -0.09 -0.22 16 13 O -0.53 -1.98 15.58 5.55 0.09 -1.89 16 14 N -0.71 1.95 5.26 -53.02 -0.28 1.67 16 15 C 0.12 -0.33 4.32 -67.12 -0.29 -0.63 16 16 H 0.11 -0.10 7.47 -51.93 -0.39 -0.49 16 17 C -0.15 0.47 7.43 -25.92 -0.19 0.28 16 18 C -0.13 0.58 3.84 -89.81 -0.34 0.23 16 19 H 0.10 -0.36 8.14 -51.93 -0.42 -0.78 16 20 C 0.11 -0.48 5.99 -4.04 -0.02 -0.50 16 21 N -0.46 0.44 2.75 -118.58 -0.33 0.11 16 22 C -0.06 0.01 11.58 -16.56 -0.19 -0.19 16 23 C -0.03 -0.07 11.87 -17.81 -0.21 -0.28 16 24 N -0.50 -2.09 11.25 -14.67 -0.17 -2.25 16 25 C 0.18 0.19 12.56 -90.38 -1.14 -0.95 16 26 C -0.14 0.68 7.39 -25.92 -0.19 0.49 16 27 C -0.12 -0.37 9.55 -39.43 -0.38 -0.75 16 28 H 0.38 -0.92 8.74 45.56 0.40 -0.52 16 29 H 0.08 -0.10 7.96 -51.93 -0.41 -0.51 16 30 H -0.25 -0.68 7.11 56.52 0.40 -0.28 16 31 H -0.26 -0.34 7.11 56.52 0.40 0.06 16 32 H 0.13 -0.09 4.87 -52.48 -0.26 -0.35 16 33 H 0.13 -0.17 8.06 -52.49 -0.42 -0.59 16 34 H 0.13 0.09 6.30 -52.49 -0.33 -0.25 16 35 H 0.07 0.06 7.61 -51.93 -0.39 -0.34 16 36 H 0.07 0.05 7.63 -51.93 -0.40 -0.35 16 37 H 0.11 -0.35 8.14 -51.93 -0.42 -0.77 16 38 H 0.11 -0.36 8.14 -51.93 -0.42 -0.78 16 39 H 0.40 -2.04 8.70 -40.82 -0.36 -2.40 16 40 H 0.10 -0.38 7.90 -51.93 -0.41 -0.79 16 41 H 0.07 -0.10 8.14 -51.92 -0.42 -0.53 16 42 H 0.09 -0.49 8.14 -51.93 -0.42 -0.91 16 43 H 0.10 -0.52 7.85 -51.93 -0.41 -0.93 16 44 H 0.17 -0.49 8.06 -52.49 -0.42 -0.91 16 45 H 0.17 0.09 8.06 -52.48 -0.42 -0.33 16 46 H 0.20 -0.38 8.06 -52.49 -0.42 -0.80 16 47 H 0.08 -0.42 8.14 -51.93 -0.42 -0.84 16 48 H 0.10 -0.59 8.10 -51.93 -0.42 -1.01 16 49 H 0.13 0.35 8.06 -52.49 -0.42 -0.08 16 LS Contribution 409.13 15.07 6.17 6.17 Total: 0.00 -11.45 409.13 -12.34 -23.79 By element: Atomic # 1 Polarization: -8.24 SS G_CDS: -7.22 Total: -15.46 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -4.89 Total: -4.42 kcal Atomic # 7 Polarization: 0.30 SS G_CDS: -0.77 Total: -0.47 kcal Atomic # 8 Polarization: -3.61 SS G_CDS: -0.56 Total: -4.17 kcal Atomic # 14 Polarization: -0.37 SS G_CDS: -5.06 Total: -5.43 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -11.45 -12.34 -23.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_4549614.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.973 kcal (2) G-P(sol) polarization free energy of solvation -11.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds