Wall clock time and date at job start Tue Mar 9 2021 12:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86302 * 109.46987 * 2 1 4 4 C 1.50696 * 109.47218 * 240.00021 * 2 1 3 5 5 C 1.38240 * 119.97662 * 119.99666 * 4 2 1 6 6 C 1.38288 * 120.11591 * 180.02562 * 5 4 2 7 7 C 1.38119 * 120.05366 * 0.24016 * 6 5 4 8 8 C 1.38757 * 119.94413 * 359.50981 * 7 6 5 9 9 O 1.35896 * 120.05426 * 180.21111 * 8 7 6 10 10 C 1.42901 * 117.00083 * 0.29963 * 9 8 7 11 11 C 1.53007 * 109.47274 * 180.02562 * 10 9 8 12 12 C 1.50689 * 109.47307 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00182 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00235 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99997 * 179.97438 * 14 12 11 16 16 H 1.08998 * 112.85648 * 336.20292 * 15 14 12 17 17 C 1.53784 * 113.61157 * 107.51269 * 15 14 12 18 18 C 1.53775 * 87.08516 * 89.11193 * 17 15 14 19 19 H 1.09000 * 113.61801 * 270.88549 * 18 17 15 20 20 C 1.52999 * 113.68952 * 139.99166 * 18 17 15 21 21 N 1.46504 * 109.47202 * 87.46602 * 20 18 17 22 22 C 1.36880 * 126.39493 * 89.99945 * 21 20 18 23 23 C 1.34666 * 106.81563 * 180.02562 * 22 21 20 24 24 N 1.34130 * 108.02319 * 359.97438 * 23 22 21 25 25 C 1.30505 * 109.25007 * 359.72563 * 24 23 22 26 26 C 1.53783 * 87.07971 * 25.43396 * 18 17 15 27 27 C 1.38171 * 119.97135 * 300.02344 * 4 2 1 28 28 H 0.96707 * 114.00013 * 299.99933 * 1 2 3 29 29 H 1.09004 * 109.46929 * 119.99805 * 2 1 3 30 30 H 1.48496 * 110.00067 * 300.00156 * 3 2 1 31 31 H 1.48503 * 109.99859 * 61.32160 * 3 2 1 32 32 H 1.08006 * 119.93931 * 0.02562 * 5 4 2 33 33 H 1.08002 * 119.96980 * 179.97438 * 6 5 4 34 34 H 1.07998 * 120.02956 * 179.72220 * 7 6 5 35 35 H 1.09000 * 109.47190 * 299.99904 * 10 9 8 36 36 H 1.09000 * 109.47473 * 60.00460 * 10 9 8 37 37 H 1.09000 * 109.46703 * 299.99919 * 11 10 9 38 38 H 1.08998 * 109.47110 * 59.99057 * 11 10 9 39 39 H 0.97003 * 119.99793 * 0.02562 * 14 12 11 40 40 H 1.08997 * 113.61438 * 203.66738 * 17 15 14 41 41 H 1.09007 * 113.61111 * 334.56134 * 17 15 14 42 42 H 1.09005 * 109.46933 * 207.46350 * 20 18 17 43 43 H 1.08996 * 109.47111 * 327.46511 * 20 18 17 44 44 H 1.07997 * 126.59540 * 0.03263 * 22 21 20 45 45 H 1.08003 * 125.99296 * 179.97438 * 23 22 21 46 46 H 1.08001 * 125.64414 * 180.29187 * 25 24 23 47 47 H 1.09002 * 113.61349 * 220.01672 * 26 18 17 48 48 H 1.08998 * 113.69269 * 89.13193 * 26 18 17 49 49 H 1.07997 * 120.02764 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7260 -0.0381 -2.1401 6 6 3.1882 -0.6870 -3.2704 7 6 2.8525 -2.0077 -3.4957 8 6 2.0593 -2.6863 -2.5816 9 8 1.7312 -3.9871 -2.7989 10 6 2.2431 -4.5957 -3.9862 11 6 1.7711 -6.0493 -4.0584 12 6 2.3103 -6.6909 -5.3108 13 8 3.0043 -6.0490 -6.0705 14 7 2.0223 -7.9785 -5.5861 15 6 2.5461 -8.6020 -6.8038 16 1 2.7830 -7.8770 -7.5825 17 6 3.6715 -9.6167 -6.5413 18 6 2.5717 -10.6827 -6.4046 19 1 2.1889 -10.7875 -5.3894 20 6 2.9332 -12.0244 -7.0448 21 7 3.6571 -12.8493 -6.0743 22 6 3.1042 -13.7311 -5.1853 23 6 4.1220 -14.2712 -4.4882 24 7 5.2652 -13.7342 -4.9396 25 6 4.9949 -12.8862 -5.8940 26 6 1.7014 -9.7867 -7.3017 27 6 1.5968 -2.0331 -1.4487 28 1 -0.3933 0.4417 0.7651 29 1 1.7923 -0.5138 0.8900 30 1 1.5614 2.4679 -1.2084 31 1 1.5879 2.4585 1.2243 32 1 2.9864 0.9959 -1.9676 33 1 3.8085 -0.1593 -3.9798 34 1 3.2099 -2.5128 -4.3809 35 1 1.8799 -4.0524 -4.8586 36 1 3.3326 -4.5676 -3.9682 37 1 2.1339 -6.5929 -3.1861 38 1 0.6816 -6.0771 -4.0764 39 1 1.4676 -8.4921 -4.9782 40 1 4.3272 -9.7729 -7.3979 41 1 4.2184 -9.4325 -5.6165 42 1 2.0218 -12.5385 -7.3503 43 1 3.5634 -11.8526 -7.9173 44 1 2.0537 -13.9515 -5.0659 45 1 4.0333 -15.0076 -3.7032 46 1 5.7207 -12.3075 -6.4460 47 1 0.6577 -9.7399 -6.9909 48 1 1.8172 -9.9887 -8.3665 49 1 0.9753 -2.5577 -0.7383 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_4549614.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:53 Heat of formation + Delta-G solvation = 17.471888 kcal Electronic energy + Delta-G solvation = -29913.016327 eV Core-core repulsion = 25616.293861 eV Total energy + Delta-G solvation = -4296.722466 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.94226 -41.53504 -41.14479 -39.68317 -39.01032 -37.46482 -35.39509 -34.06134 -33.10207 -32.61834 -30.87465 -30.37210 -28.83238 -27.06992 -26.72555 -25.65062 -23.97241 -23.67882 -22.27042 -22.13749 -21.80877 -21.48734 -20.30850 -19.24574 -18.58478 -18.43461 -17.93283 -17.52712 -17.32080 -17.14006 -16.90789 -16.48447 -16.04940 -15.87722 -15.75156 -15.58741 -15.26460 -14.97333 -14.81733 -14.62802 -14.55284 -14.38959 -14.25792 -14.12759 -13.95136 -13.62038 -13.45760 -13.42116 -12.99884 -12.95325 -12.77707 -12.38627 -12.32827 -12.03755 -11.84738 -11.73095 -11.70072 -11.35732 -11.13015 -10.89687 -10.58304 -10.47487 -10.13927 -9.91861 -9.43533 -9.29695 -4.91820 0.17419 0.36922 1.16834 1.27533 1.44538 1.60302 1.66240 1.93825 1.95057 2.24179 2.43387 2.60661 3.34882 3.38478 3.48249 3.50956 3.68972 3.74169 3.77526 3.82322 3.86127 3.89560 3.94858 4.08543 4.08936 4.13075 4.21191 4.24014 4.26633 4.31790 4.46289 4.51840 4.59560 4.61943 4.62771 4.69811 4.73142 4.75719 4.79970 4.83952 4.95674 4.98253 5.00984 5.15246 5.22525 5.35475 5.36552 5.43226 5.54197 5.66939 5.84431 6.29571 6.32714 6.39480 6.57148 7.09411 7.17720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.090 4.090 3 Si 0.772 3.228 4 C -0.048 4.048 5 C -0.159 4.159 6 C -0.075 4.075 7 C -0.212 4.212 8 C 0.116 3.884 9 O -0.324 6.324 10 C 0.074 3.926 11 C -0.134 4.134 12 C 0.523 3.477 13 O -0.581 6.581 14 N -0.700 5.700 15 C 0.109 3.891 16 H 0.087 0.913 17 C -0.147 4.147 18 C -0.116 4.116 19 H 0.093 0.907 20 C 0.110 3.890 21 N -0.451 5.451 22 C -0.047 4.047 23 C -0.067 4.067 24 N -0.547 5.547 25 C 0.174 3.826 26 C -0.119 4.119 27 C -0.142 4.142 28 H 0.396 0.604 29 H 0.097 0.903 30 H -0.298 1.298 31 H -0.284 1.284 32 H 0.147 0.853 33 H 0.155 0.845 34 H 0.139 0.861 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.417 0.583 40 H 0.104 0.896 41 H 0.054 0.946 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.202 0.798 45 H 0.171 0.829 46 H 0.221 0.779 47 H 0.089 0.911 48 H 0.116 0.884 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.970 -0.930 -1.298 3.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.198 4.198 3 Si 0.676 3.324 4 C -0.048 4.048 5 C -0.176 4.176 6 C -0.092 4.092 7 C -0.230 4.230 8 C 0.071 3.929 9 O -0.238 6.238 10 C -0.002 4.002 11 C -0.173 4.173 12 C 0.310 3.690 13 O -0.460 6.460 14 N -0.352 5.352 15 C 0.003 3.997 16 H 0.105 0.895 17 C -0.186 4.186 18 C -0.135 4.135 19 H 0.111 0.889 20 C -0.011 4.011 21 N -0.133 5.133 22 C -0.181 4.181 23 C -0.214 4.214 24 N -0.266 5.266 25 C -0.109 4.109 26 C -0.157 4.157 27 C -0.161 4.161 28 H 0.246 0.754 29 H 0.115 0.885 30 H -0.226 1.226 31 H -0.211 1.211 32 H 0.164 0.836 33 H 0.173 0.827 34 H 0.157 0.843 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.254 0.746 40 H 0.122 0.878 41 H 0.072 0.928 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.218 0.782 45 H 0.188 0.812 46 H 0.237 0.763 47 H 0.108 0.892 48 H 0.134 0.866 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.022 -0.218 -2.082 2.911 hybrid contribution -1.916 -0.278 0.483 1.995 sum -3.938 -0.496 -1.599 4.279 Atomic orbital electron populations 1.86549 1.18438 1.80813 1.51076 1.25115 0.84185 1.12284 0.98227 0.93997 0.90355 0.71534 0.76492 1.19311 0.96784 0.92939 0.95764 1.21135 1.00792 1.00637 0.95077 1.21238 0.97657 0.93467 0.96880 1.21553 1.03253 0.97090 1.01122 1.19120 0.95328 0.83537 0.94916 1.85945 1.71402 1.22769 1.43718 1.22444 0.99008 0.93159 0.85551 1.21437 1.04930 0.94018 0.96926 1.20581 0.79367 0.82083 0.86931 1.90739 1.39976 1.63836 1.51485 1.45552 1.53100 1.11455 1.25070 1.21896 0.95982 0.94503 0.87311 0.89482 1.23548 0.96797 0.95545 1.02700 1.22920 0.97630 0.92480 1.00473 0.88850 1.22235 0.98639 0.90039 0.90227 1.45748 1.07298 1.31482 1.28765 1.23151 1.01173 0.97531 0.96248 1.22634 0.88557 1.05385 1.04828 1.70248 1.30749 1.12677 1.12974 1.25375 0.84710 1.01399 0.99394 1.23278 0.99164 0.91862 1.01390 1.20316 1.03486 0.94749 0.97520 0.75367 0.88534 1.22602 1.21060 0.83610 0.82687 0.84340 0.91695 0.91547 0.85775 0.85572 0.74607 0.87794 0.92752 0.86849 0.86955 0.78163 0.81159 0.76267 0.89224 0.86551 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.11 12.74 -148.98 -1.90 -4.00 16 2 C -0.09 -0.09 2.81 71.23 0.20 0.11 16 3 Si 0.77 -1.06 29.79 68.60 2.04 0.98 16 4 C -0.05 -0.23 5.42 -19.88 -0.11 -0.34 16 5 C -0.16 -0.41 8.67 22.28 0.19 -0.21 16 6 C -0.07 -0.16 10.04 22.25 0.22 0.06 16 7 C -0.21 -0.98 9.04 22.37 0.20 -0.78 16 8 C 0.12 0.82 6.69 22.51 0.15 0.97 16 9 O -0.32 -1.86 10.14 -92.38 -0.94 -2.80 16 10 C 0.07 0.15 4.03 71.98 0.29 0.44 16 11 C -0.13 0.48 6.07 29.85 0.18 0.67 16 12 C 0.52 0.10 7.83 87.65 0.69 0.78 16 13 O -0.58 -5.30 15.58 -3.04 -0.05 -5.35 16 14 N -0.70 3.91 5.26 -440.04 -2.32 1.60 16 15 C 0.11 -0.62 4.32 45.52 0.20 -0.42 16 16 H 0.09 -0.08 7.47 -2.39 -0.02 -0.10 16 17 C -0.15 0.98 7.43 31.12 0.23 1.21 16 18 C -0.12 1.22 3.84 -10.27 -0.04 1.18 16 19 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 20 C 0.11 -1.16 5.99 86.38 0.52 -0.65 16 21 N -0.45 1.31 2.75 -529.07 -1.46 -0.14 16 22 C -0.05 0.05 11.58 83.09 0.96 1.01 16 23 C -0.07 -0.37 11.87 83.52 0.99 0.62 16 24 N -0.55 -5.29 11.25 -200.31 -2.25 -7.54 16 25 C 0.17 0.39 12.56 180.26 2.26 2.66 16 26 C -0.12 1.41 7.39 31.12 0.23 1.64 16 27 C -0.14 -1.02 9.55 22.37 0.21 -0.81 16 28 H 0.40 -1.88 8.74 -74.05 -0.65 -2.53 16 29 H 0.10 -0.28 7.96 -2.39 -0.02 -0.30 16 30 H -0.30 -1.76 7.11 99.48 0.71 -1.06 16 31 H -0.28 -0.64 7.11 99.48 0.71 0.07 16 32 H 0.15 -0.28 4.87 -2.91 -0.01 -0.30 16 33 H 0.16 -0.51 8.06 -2.91 -0.02 -0.53 16 34 H 0.14 0.36 6.30 -2.91 -0.02 0.34 16 35 H 0.06 0.22 7.61 -2.39 -0.02 0.20 16 36 H 0.07 0.21 7.63 -2.39 -0.02 0.19 16 37 H 0.12 -0.84 8.14 -2.39 -0.02 -0.86 16 38 H 0.13 -0.91 8.14 -2.39 -0.02 -0.93 16 39 H 0.42 -4.61 8.70 -92.71 -0.81 -5.41 16 40 H 0.10 -0.87 7.90 -2.39 -0.02 -0.89 16 41 H 0.05 -0.10 8.14 -2.38 -0.02 -0.12 16 42 H 0.11 -1.54 8.14 -2.38 -0.02 -1.56 16 43 H 0.11 -1.47 7.85 -2.39 -0.02 -1.49 16 44 H 0.20 -1.56 8.06 -2.91 -0.02 -1.58 16 45 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 46 H 0.22 -0.81 8.06 -2.91 -0.02 -0.83 16 47 H 0.09 -1.16 8.14 -2.39 -0.02 -1.18 16 48 H 0.12 -1.65 8.10 -2.39 -0.02 -1.67 16 49 H 0.13 0.89 8.06 -2.91 -0.02 0.86 16 Total: 0.00 -29.50 409.13 0.29 -29.22 By element: Atomic # 1 Polarization: -19.67 SS G_CDS: -0.44 Total: -20.10 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 7.59 Total: 8.14 kcal Atomic # 7 Polarization: -0.06 SS G_CDS: -6.02 Total: -6.09 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -2.88 Total: -12.15 kcal Atomic # 14 Polarization: -1.06 SS G_CDS: 2.04 Total: 0.98 kcal Total: -29.50 0.29 -29.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_4549614.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.689 kcal (2) G-P(sol) polarization free energy of solvation -29.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds